HEADER OXIDOREDUCTASE 14-JUN-13 4BT9 TITLE CRYSTAL STRUCTURE OF THE PEPTIDE(PRO-PRO-GLY)3 BOUND COMPLEX OF N- TITLE 2 TERMINAL DOMAIN AND PEPTIDE SUBSTRATE BINDING DOMAIN OF PROLYL-4 TITLE 3 HYDROXYLASE (RESIDUES 1-238) TYPE I FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL 4-HYDROXYLASE SUBUNIT ALPHA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: COLLAGEN BINDING DOMAIN, RESIDUES 18-255; COMPND 5 SYNONYM: 4-PH ALPHA-1, PROCOLLAGEN-PROLINE\,2-OXOGLUTARATE-4- COMPND 6 DIOXYGENASE SUBUNIT ALPHA-1, PROLYL-4 HYDROXYLASE TYPE I; COMPND 7 EC: 1.14.11.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: (PRO-PRO-GLY)3 PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS OXIDOREDUCTASE, TETRATRICOPEPTIDE REPEAT MOTIF, COILED-COIL, PROLINE KEYWDS 2 RICH PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR J.ANANTHARAJAN,M.K.KOSKI,R.K.WIERENGA REVDAT 7 20-DEC-23 4BT9 1 REMARK REVDAT 6 17-JAN-18 4BT9 1 REMARK REVDAT 5 25-JAN-17 4BT9 1 REMARK REVDAT 4 25-DEC-13 4BT9 1 JRNL REVDAT 3 20-NOV-13 4BT9 1 JRNL REVDAT 2 16-OCT-13 4BT9 1 JRNL REVDAT 1 09-OCT-13 4BT9 0 JRNL AUTH J.ANANTHARAJAN,M.K.KOSKI,P.KURSULA,R.HIETA,U.BERGMANN, JRNL AUTH 2 J.MYLLYHARJU,R.K.WIERENGA JRNL TITL THE STRUCTURAL MOTIFS FOR SUBSTRATE BINDING AND DIMERIZATION JRNL TITL 2 OF THE ALPHA SUBUNIT OF COLLAGEN PROLYL 4-HYDROXYLASE JRNL REF STRUCTURE V. 21 2107 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 24207127 JRNL DOI 10.1016/J.STR.2013.09.005 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 40148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.7932 - 4.5786 1.00 2907 154 0.1816 0.2204 REMARK 3 2 4.5786 - 3.6343 1.00 2781 146 0.1562 0.1946 REMARK 3 3 3.6343 - 3.1749 1.00 2777 144 0.1682 0.2231 REMARK 3 4 3.1749 - 2.8847 1.00 2718 142 0.1816 0.2416 REMARK 3 5 2.8847 - 2.6779 1.00 2723 144 0.1708 0.2453 REMARK 3 6 2.6779 - 2.5200 1.00 2731 142 0.1666 0.2357 REMARK 3 7 2.5200 - 2.3938 1.00 2683 141 0.1647 0.2151 REMARK 3 8 2.3938 - 2.2896 1.00 2715 143 0.1654 0.1752 REMARK 3 9 2.2896 - 2.2015 1.00 2678 140 0.1765 0.2170 REMARK 3 10 2.2015 - 2.1255 1.00 2675 141 0.1676 0.1890 REMARK 3 11 2.1255 - 2.0590 1.00 2710 141 0.1782 0.2573 REMARK 3 12 2.0590 - 2.0002 1.00 2687 141 0.1883 0.2740 REMARK 3 13 2.0002 - 1.9475 1.00 2684 132 0.2085 0.2867 REMARK 3 14 1.9475 - 1.9000 1.00 2682 146 0.2450 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3994 REMARK 3 ANGLE : 0.931 5406 REMARK 3 CHIRALITY : 0.061 598 REMARK 3 PLANARITY : 0.004 697 REMARK 3 DIHEDRAL : 13.470 1510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 3 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.0488 10.6805 40.5033 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.1182 REMARK 3 T33: 0.1873 T12: -0.0147 REMARK 3 T13: -0.0004 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 4.1110 L22: 0.0858 REMARK 3 L33: 0.5224 L12: -0.0439 REMARK 3 L13: -1.0541 L23: 0.0007 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.1122 S13: -0.3023 REMARK 3 S21: 0.0347 S22: -0.0671 S23: -0.0021 REMARK 3 S31: 0.0593 S32: 0.0406 S33: 0.0383 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 91 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.9305 9.9857 19.0708 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.1549 REMARK 3 T33: 0.2005 T12: 0.0396 REMARK 3 T13: 0.0121 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.3523 L22: 0.7827 REMARK 3 L33: 2.3062 L12: -0.3364 REMARK 3 L13: -0.6240 L23: 0.7073 REMARK 3 S TENSOR REMARK 3 S11: -0.0410 S12: 0.1338 S13: -0.1095 REMARK 3 S21: -0.0475 S22: 0.0227 S23: -0.1288 REMARK 3 S31: 0.2801 S32: 0.2096 S33: 0.0041 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 147 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.1092 11.5307 -2.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.3887 REMARK 3 T33: 0.2063 T12: -0.0057 REMARK 3 T13: 0.0316 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.1048 L22: 2.4637 REMARK 3 L33: 3.1344 L12: -0.2503 REMARK 3 L13: 0.3152 L23: -2.0929 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.3764 S13: 0.0030 REMARK 3 S21: -0.2913 S22: 0.1504 S23: 0.1834 REMARK 3 S31: 0.1723 S32: -0.6364 S33: -0.0838 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 0 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8472 8.1612 33.4259 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.0712 REMARK 3 T33: 0.1743 T12: -0.0139 REMARK 3 T13: -0.0102 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 4.0152 L22: 0.4411 REMARK 3 L33: 0.8695 L12: -0.2595 REMARK 3 L13: -1.0485 L23: 0.1138 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: -0.1560 S13: -0.2321 REMARK 3 S21: 0.0246 S22: 0.0931 S23: -0.0311 REMARK 3 S31: 0.1549 S32: 0.0138 S33: 0.0675 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 62 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.7854 12.8538 24.2171 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1125 REMARK 3 T33: 0.1247 T12: 0.0200 REMARK 3 T13: 0.0002 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 2.7401 L22: 0.8941 REMARK 3 L33: 1.8158 L12: -0.0310 REMARK 3 L13: -0.9041 L23: 0.2774 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.1990 S13: 0.0698 REMARK 3 S21: 0.0148 S22: -0.0366 S23: -0.0060 REMARK 3 S31: 0.0461 S32: 0.0372 S33: 0.0088 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 91 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.5729 21.2389 34.7068 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.0932 REMARK 3 T33: 0.1454 T12: -0.0293 REMARK 3 T13: 0.0211 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 4.2897 L22: 2.8063 REMARK 3 L33: 1.9687 L12: -1.6151 REMARK 3 L13: -0.1636 L23: 0.6515 REMARK 3 S TENSOR REMARK 3 S11: 0.1698 S12: 0.2450 S13: -0.1390 REMARK 3 S21: 0.1069 S22: -0.1489 S23: 0.2765 REMARK 3 S31: 0.0404 S32: -0.1178 S33: -0.0257 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 107 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0591 19.1267 55.5914 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.1784 REMARK 3 T33: 0.2298 T12: 0.0057 REMARK 3 T13: 0.0623 T23: -0.1103 REMARK 3 L TENSOR REMARK 3 L11: 3.4087 L22: 2.4722 REMARK 3 L33: 3.1255 L12: 1.8980 REMARK 3 L13: -1.2064 L23: -1.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: -0.3011 S13: 0.7351 REMARK 3 S21: -0.0437 S22: 0.1473 S23: 0.2713 REMARK 3 S31: -0.5543 S32: -0.2464 S33: -0.0161 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 124 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0380 3.4320 57.2163 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2749 REMARK 3 T33: 0.1952 T12: -0.0253 REMARK 3 T13: -0.0034 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.5475 L22: 1.9602 REMARK 3 L33: 1.4750 L12: 0.0644 REMARK 3 L13: 1.2011 L23: 0.3033 REMARK 3 S TENSOR REMARK 3 S11: 0.1585 S12: -0.2435 S13: -0.4598 REMARK 3 S21: -0.1442 S22: 0.0846 S23: 0.0386 REMARK 3 S31: 0.0572 S32: 0.1922 S33: -0.1829 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 147 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.8450 17.4438 73.0231 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.4288 REMARK 3 T33: 0.1874 T12: -0.0766 REMARK 3 T13: 0.0272 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: -0.5545 L22: 1.0133 REMARK 3 L33: 3.0617 L12: -0.0941 REMARK 3 L13: 0.9027 L23: 1.8290 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: 0.0698 S13: 0.0752 REMARK 3 S21: 0.2396 S22: 0.0240 S23: 0.0069 REMARK 3 S31: 0.3842 S32: 0.0139 S33: 0.0451 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN C AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.0008 22.6734 -8.2432 REMARK 3 T TENSOR REMARK 3 T11: 0.3337 T22: 0.5207 REMARK 3 T33: 0.3792 T12: -0.0313 REMARK 3 T13: -0.0177 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 4.5465 L22: 4.7476 REMARK 3 L33: 4.4065 L12: -0.1845 REMARK 3 L13: 1.4371 L23: 0.4108 REMARK 3 S TENSOR REMARK 3 S11: -0.4616 S12: 0.1301 S13: 0.2089 REMARK 3 S21: -0.3696 S22: 0.4122 S23: 1.1994 REMARK 3 S31: -0.0068 S32: 0.0211 S33: -0.0246 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 1.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40153 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.50 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YQ8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEGMME 5000, 10% DMSO, 6% MPD, 0.1 REMARK 280 M MES, PH 6.0, 5MM SPERMINE HCL, 5MM (PRO-PRO-GLY)3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.14000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.14000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 1 REMARK 465 PRO A 2 REMARK 465 GLU B 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 34 O HOH B 2025 2.07 REMARK 500 OD1 ASN A 125 O HOH A 2112 2.13 REMARK 500 O HOH B 2038 O HOH B 2076 2.17 REMARK 500 OE2 GLU A 160 O HOH A 2107 2.18 REMARK 500 OD1 ASP A 122 O HOH A 2113 2.18 REMARK 500 O HOH A 2006 O HOH A 2012 2.19 REMARK 500 O HOH B 2044 O HOH B 2096 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 37 O HOH B 2032 2755 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 71.73 -155.41 REMARK 500 THR A 76 -52.73 -122.28 REMARK 500 ASN A 106 -166.37 -116.05 REMARK 500 ASN A 135 47.42 -76.53 REMARK 500 ASP B 56 86.61 -157.17 REMARK 500 ASN B 106 -166.46 -121.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BT8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO FORM OF N-TERMINAL DOMAIN AND PEPTIDE REMARK 900 SUBSTRATE BINDING DOMAIN OF PROLYL- 4 HYDROXYLASE TYPE I FROM HUMAN REMARK 900 RELATED ID: 4BTA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTIDE(PRO-PRO-GLY)3 BOUND COMPLEX OF N- REMARK 900 TERMINAL DOMAIN AND PEPTIDE SUBSTRATE BINDING DOMAIN OF PROLYL-4 REMARK 900 HYDROXYLASE (RESIDUES 1-244 ) TYPE I FROM HUMAN REMARK 900 RELATED ID: 4BTB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTIDE(PRO)9 BOUND COMPLEX OF N-TERMINAL REMARK 900 DOMAIN AND PEPTIDE SUBSTRATE BINDING DOMAIN OF PROLYL-4 HYDROXYLASE REMARK 900 (RESIDUES 1-238) TYPE I FROM HUMAN DBREF 4BT9 A 1 238 UNP P13674 P4HA1_HUMAN 18 255 DBREF 4BT9 B 1 238 UNP P13674 P4HA1_HUMAN 18 255 DBREF 4BT9 C 1 9 PDB 4BT9 4BT9 1 9 SEQADV 4BT9 MET A 0 UNP P13674 EXPRESSION TAG SEQADV 4BT9 MET B 0 UNP P13674 EXPRESSION TAG SEQRES 1 A 239 MET HIS PRO GLY PHE PHE THR SER ILE GLY GLN MET THR SEQRES 2 A 239 ASP LEU ILE HIS THR GLU LYS ASP LEU VAL THR SER LEU SEQRES 3 A 239 LYS ASP TYR ILE LYS ALA GLU GLU ASP LYS LEU GLU GLN SEQRES 4 A 239 ILE LYS LYS TRP ALA GLU LYS LEU ASP ARG LEU THR SER SEQRES 5 A 239 THR ALA THR LYS ASP PRO GLU GLY PHE VAL GLY HIS PRO SEQRES 6 A 239 VAL ASN ALA PHE LYS LEU MET LYS ARG LEU ASN THR GLU SEQRES 7 A 239 TRP SER GLU LEU GLU ASN LEU VAL LEU LYS ASP MET SER SEQRES 8 A 239 ASP GLY PHE ILE SER ASN LEU THR ILE GLN ARG GLN TYR SEQRES 9 A 239 PHE PRO ASN ASP GLU ASP GLN VAL GLY ALA ALA LYS ALA SEQRES 10 A 239 LEU LEU ARG LEU GLN ASP THR TYR ASN LEU ASP THR ASP SEQRES 11 A 239 THR ILE SER LYS GLY ASN LEU PRO GLY VAL LYS HIS LYS SEQRES 12 A 239 SER PHE LEU THR ALA GLU ASP CYS PHE GLU LEU GLY LYS SEQRES 13 A 239 VAL ALA TYR THR GLU ALA ASP TYR TYR HIS THR GLU LEU SEQRES 14 A 239 TRP MET GLU GLN ALA LEU ARG GLN LEU ASP GLU GLY GLU SEQRES 15 A 239 ILE SER THR ILE ASP LYS VAL SER VAL LEU ASP TYR LEU SEQRES 16 A 239 SER TYR ALA VAL TYR GLN GLN GLY ASP LEU ASP LYS ALA SEQRES 17 A 239 LEU LEU LEU THR LYS LYS LEU LEU GLU LEU ASP PRO GLU SEQRES 18 A 239 HIS GLN ARG ALA ASN GLY ASN LEU LYS TYR PHE GLU TYR SEQRES 19 A 239 ILE MET ALA LYS GLU SEQRES 1 B 239 MET HIS PRO GLY PHE PHE THR SER ILE GLY GLN MET THR SEQRES 2 B 239 ASP LEU ILE HIS THR GLU LYS ASP LEU VAL THR SER LEU SEQRES 3 B 239 LYS ASP TYR ILE LYS ALA GLU GLU ASP LYS LEU GLU GLN SEQRES 4 B 239 ILE LYS LYS TRP ALA GLU LYS LEU ASP ARG LEU THR SER SEQRES 5 B 239 THR ALA THR LYS ASP PRO GLU GLY PHE VAL GLY HIS PRO SEQRES 6 B 239 VAL ASN ALA PHE LYS LEU MET LYS ARG LEU ASN THR GLU SEQRES 7 B 239 TRP SER GLU LEU GLU ASN LEU VAL LEU LYS ASP MET SER SEQRES 8 B 239 ASP GLY PHE ILE SER ASN LEU THR ILE GLN ARG GLN TYR SEQRES 9 B 239 PHE PRO ASN ASP GLU ASP GLN VAL GLY ALA ALA LYS ALA SEQRES 10 B 239 LEU LEU ARG LEU GLN ASP THR TYR ASN LEU ASP THR ASP SEQRES 11 B 239 THR ILE SER LYS GLY ASN LEU PRO GLY VAL LYS HIS LYS SEQRES 12 B 239 SER PHE LEU THR ALA GLU ASP CYS PHE GLU LEU GLY LYS SEQRES 13 B 239 VAL ALA TYR THR GLU ALA ASP TYR TYR HIS THR GLU LEU SEQRES 14 B 239 TRP MET GLU GLN ALA LEU ARG GLN LEU ASP GLU GLY GLU SEQRES 15 B 239 ILE SER THR ILE ASP LYS VAL SER VAL LEU ASP TYR LEU SEQRES 16 B 239 SER TYR ALA VAL TYR GLN GLN GLY ASP LEU ASP LYS ALA SEQRES 17 B 239 LEU LEU LEU THR LYS LYS LEU LEU GLU LEU ASP PRO GLU SEQRES 18 B 239 HIS GLN ARG ALA ASN GLY ASN LEU LYS TYR PHE GLU TYR SEQRES 19 B 239 ILE MET ALA LYS GLU SEQRES 1 C 9 PRO PRO GLY PRO PRO GLY PRO PRO GLY FORMUL 4 HOH *281(H2 O) HELIX 1 1 SER A 7 LYS A 55 1 49 HELIX 2 2 ASP A 56 HIS A 63 1 8 HELIX 3 3 HIS A 63 THR A 76 1 14 HELIX 4 4 THR A 76 LEU A 86 1 11 HELIX 5 5 SER A 90 ARG A 101 1 12 HELIX 6 6 GLN A 102 PHE A 104 5 3 HELIX 7 7 ASN A 106 ASN A 125 1 20 HELIX 8 8 ASP A 127 LYS A 133 1 7 HELIX 9 9 THR A 146 GLU A 160 1 15 HELIX 10 10 ASP A 162 GLU A 179 1 18 HELIX 11 11 ASP A 186 GLN A 201 1 16 HELIX 12 12 ASP A 203 ASP A 218 1 16 HELIX 13 13 HIS A 221 LYS A 237 1 17 HELIX 14 14 SER B 7 ASP B 56 1 50 HELIX 15 15 ASP B 56 GLY B 62 1 7 HELIX 16 16 HIS B 63 THR B 76 1 14 HELIX 17 17 THR B 76 LYS B 87 1 12 HELIX 18 18 SER B 90 ARG B 101 1 12 HELIX 19 19 GLN B 102 PHE B 104 5 3 HELIX 20 20 ASN B 106 ASN B 125 1 20 HELIX 21 21 ASP B 127 GLY B 134 1 8 HELIX 22 22 THR B 146 GLU B 160 1 15 HELIX 23 23 ASP B 162 GLU B 179 1 18 HELIX 24 24 ASP B 186 GLN B 201 1 16 HELIX 25 25 ASP B 203 ASP B 218 1 16 HELIX 26 26 HIS B 221 LYS B 237 1 17 CRYST1 72.280 100.930 68.450 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013835 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014609 0.00000