HEADER OXIDOREDUCTASE 14-JUN-13 4BTA TITLE CRYSTAL STRUCTURE OF THE PEPTIDE(PRO-PRO-GLY)3 BOUND COMPLEX OF N- TITLE 2 TERMINAL DOMAIN AND PEPTIDE SUBSTRATE BINDING DOMAIN OF PROLYL-4 TITLE 3 HYDROXYLASE (RESIDUES 1-244) TYPE I FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL 4-HYDROXYLASE SUBUNIT ALPHA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: COLLAGEN BINDING DOMAIN, RESIDUES 18-261; COMPND 5 SYNONYM: 4-PH ALPHA-1, PROCOLLAGEN-PROLINE\,2-OXOGLUTARATE-4- COMPND 6 DIOXYGENASE SUBUNIT ALPHA-1, PROLYL-4 HYDROXYLASE TYPE I; COMPND 7 EC: 1.14.11.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROLINE RICH PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: 9 RESIDUE PEPTIDE- PPGPPGPRPG; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS OXIDOREDUCTASE, TETRATRICOPEPTIDE REPEAT MOTIF, COILED-COIL, PROLINE KEYWDS 2 RICH PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR J.ANANTHARAJAN,M.K.KOSKI,M.PEKKALA,R.K.WIERENGA REVDAT 6 20-DEC-23 4BTA 1 REMARK REVDAT 5 17-JUL-19 4BTA 1 REMARK REVDAT 4 25-DEC-13 4BTA 1 JRNL REVDAT 3 20-NOV-13 4BTA 1 JRNL REVDAT 2 16-OCT-13 4BTA 1 JRNL REVDAT 1 09-OCT-13 4BTA 0 JRNL AUTH J.ANANTHARAJAN,M.K.KOSKI,P.KURSULA,R.HIETA,U.BERGMANN, JRNL AUTH 2 J.MYLLYHARJU,R.K.WIERENGA JRNL TITL THE STRUCTURAL MOTIFS FOR SUBSTRATE BINDING AND DIMERIZATION JRNL TITL 2 OF THE ALPHA SUBUNIT OF COLLAGEN PROLYL 4-HYDROXYLASE JRNL REF STRUCTURE V. 21 2107 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 24207127 JRNL DOI 10.1016/J.STR.2013.09.005 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8024 - 5.0401 0.99 2998 158 0.2366 0.2954 REMARK 3 2 5.0401 - 4.0026 1.00 2841 149 0.2047 0.2299 REMARK 3 3 4.0026 - 3.4972 1.00 2833 149 0.2150 0.2587 REMARK 3 4 3.4972 - 3.1777 0.99 2760 145 0.2490 0.3398 REMARK 3 5 3.1777 - 2.9501 1.00 2808 147 0.2493 0.3308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 129.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3760 REMARK 3 ANGLE : 1.798 5079 REMARK 3 CHIRALITY : 0.090 567 REMARK 3 PLANARITY : 0.011 650 REMARK 3 DIHEDRAL : 14.621 1416 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 3 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1582 -1.8464 -16.9978 REMARK 3 T TENSOR REMARK 3 T11: 0.7160 T22: 0.8097 REMARK 3 T33: 1.0777 T12: -0.1564 REMARK 3 T13: 0.2576 T23: -0.1150 REMARK 3 L TENSOR REMARK 3 L11: 7.9643 L22: 6.1630 REMARK 3 L33: 0.7622 L12: 6.5912 REMARK 3 L13: 2.2104 L23: 1.0309 REMARK 3 S TENSOR REMARK 3 S11: 0.8295 S12: 0.0711 S13: 0.1636 REMARK 3 S21: 2.1086 S22: -0.4776 S23: 1.5626 REMARK 3 S31: 0.2797 S32: 0.0832 S33: -0.2311 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 54 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3065 -23.4207 -21.5531 REMARK 3 T TENSOR REMARK 3 T11: 0.7857 T22: 0.9067 REMARK 3 T33: 2.1375 T12: -0.0893 REMARK 3 T13: 0.0389 T23: -0.2049 REMARK 3 L TENSOR REMARK 3 L11: 5.0707 L22: 1.5090 REMARK 3 L33: 5.3503 L12: 2.2004 REMARK 3 L13: 0.1894 L23: -1.6981 REMARK 3 S TENSOR REMARK 3 S11: 0.4829 S12: 0.6814 S13: -0.9924 REMARK 3 S21: 0.1770 S22: 0.3132 S23: -0.2389 REMARK 3 S31: 1.0574 S32: -0.8308 S33: -0.7087 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 91 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9412 19.0390 -25.3674 REMARK 3 T TENSOR REMARK 3 T11: 0.6777 T22: 0.5191 REMARK 3 T33: 0.5964 T12: -0.1000 REMARK 3 T13: -0.0729 T23: -0.1947 REMARK 3 L TENSOR REMARK 3 L11: 6.4972 L22: 9.1536 REMARK 3 L33: 4.7190 L12: 2.2315 REMARK 3 L13: -4.7148 L23: -4.9442 REMARK 3 S TENSOR REMARK 3 S11: 0.2171 S12: -0.4545 S13: 0.1403 REMARK 3 S21: 0.1899 S22: -0.4759 S23: 0.1434 REMARK 3 S31: -0.2560 S32: -0.0104 S33: 0.2431 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 147 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7507 18.2754 -39.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.6596 T22: 0.6626 REMARK 3 T33: 0.4125 T12: 0.0179 REMARK 3 T13: -0.0124 T23: -0.1294 REMARK 3 L TENSOR REMARK 3 L11: 4.6022 L22: 5.3151 REMARK 3 L33: 4.8303 L12: -0.9775 REMARK 3 L13: 1.7282 L23: -2.3251 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: 0.6039 S13: -0.5751 REMARK 3 S21: 0.5212 S22: 0.1337 S23: -0.5087 REMARK 3 S31: 0.4322 S32: -0.4331 S33: -0.0100 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 187 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3395 21.4955 -55.9871 REMARK 3 T TENSOR REMARK 3 T11: 1.2223 T22: 0.9905 REMARK 3 T33: 0.5656 T12: -0.0575 REMARK 3 T13: -0.0874 T23: -0.1121 REMARK 3 L TENSOR REMARK 3 L11: 4.4584 L22: 5.0122 REMARK 3 L33: 3.3613 L12: -0.8718 REMARK 3 L13: 2.3498 L23: -3.8608 REMARK 3 S TENSOR REMARK 3 S11: -0.1435 S12: 0.9277 S13: -0.3139 REMARK 3 S21: -1.6276 S22: 0.1491 S23: 0.1255 REMARK 3 S31: 0.2707 S32: 0.0025 S33: -0.0370 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 7 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7699 -7.4768 -24.8413 REMARK 3 T TENSOR REMARK 3 T11: 0.6727 T22: 0.8169 REMARK 3 T33: 1.3295 T12: 0.0161 REMARK 3 T13: 0.1221 T23: -0.3205 REMARK 3 L TENSOR REMARK 3 L11: 5.2051 L22: 4.9443 REMARK 3 L33: 2.0095 L12: 2.2105 REMARK 3 L13: 1.1607 L23: 0.5734 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 1.3086 S13: -1.0133 REMARK 3 S21: 0.0351 S22: 0.3678 S23: 0.5667 REMARK 3 S31: 0.3698 S32: 0.3800 S33: -0.4220 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 62 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1346 -7.0082 -23.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.5816 T22: 0.8107 REMARK 3 T33: 1.9062 T12: -0.0348 REMARK 3 T13: 0.1577 T23: -0.2422 REMARK 3 L TENSOR REMARK 3 L11: 4.4903 L22: 6.2156 REMARK 3 L33: 0.9270 L12: 5.3313 REMARK 3 L13: 1.1470 L23: -1.6091 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: 0.9933 S13: -0.7697 REMARK 3 S21: -0.5268 S22: 0.6478 S23: 0.8269 REMARK 3 S31: -0.0165 S32: -0.2940 S33: -0.4767 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 124 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4642 -34.3275 -7.7291 REMARK 3 T TENSOR REMARK 3 T11: 1.5164 T22: 1.4515 REMARK 3 T33: 2.3985 T12: 0.1517 REMARK 3 T13: -0.7388 T23: 0.4584 REMARK 3 L TENSOR REMARK 3 L11: 4.1687 L22: 7.5365 REMARK 3 L33: 6.7314 L12: -1.9570 REMARK 3 L13: -4.7378 L23: 4.7994 REMARK 3 S TENSOR REMARK 3 S11: -0.3707 S12: -1.3111 S13: 0.5802 REMARK 3 S21: 1.3010 S22: 1.3050 S23: 0.1154 REMARK 3 S31: 1.8858 S32: 0.7881 S33: -1.0372 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 163 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5652 -32.6509 -1.9448 REMARK 3 T TENSOR REMARK 3 T11: 1.2356 T22: 1.9644 REMARK 3 T33: 1.8785 T12: 0.0649 REMARK 3 T13: -0.1245 T23: 0.4489 REMARK 3 L TENSOR REMARK 3 L11: 4.2435 L22: 3.1399 REMARK 3 L33: 7.9387 L12: 3.0746 REMARK 3 L13: -2.5477 L23: 0.5346 REMARK 3 S TENSOR REMARK 3 S11: 0.9979 S12: -2.0726 S13: -0.7259 REMARK 3 S21: 0.8605 S22: -0.5695 S23: 0.7765 REMARK 3 S31: 1.1310 S32: 1.8023 S33: -0.6585 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 187 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9124 -28.5213 5.6070 REMARK 3 T TENSOR REMARK 3 T11: 1.2483 T22: 2.1520 REMARK 3 T33: 2.3370 T12: 0.0745 REMARK 3 T13: -0.1869 T23: 0.6615 REMARK 3 L TENSOR REMARK 3 L11: 4.0579 L22: 4.9401 REMARK 3 L33: 7.4026 L12: -4.1470 REMARK 3 L13: -4.8256 L23: 3.8094 REMARK 3 S TENSOR REMARK 3 S11: 1.2051 S12: -0.0206 S13: 1.2686 REMARK 3 S21: -1.9740 S22: 0.6470 S23: -1.8663 REMARK 3 S31: -0.1000 S32: -0.9594 S33: -1.5805 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 205 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9043 -30.6310 12.7661 REMARK 3 T TENSOR REMARK 3 T11: 1.9353 T22: 2.7492 REMARK 3 T33: 1.9292 T12: -0.3198 REMARK 3 T13: -0.2538 T23: 0.1626 REMARK 3 L TENSOR REMARK 3 L11: 9.5288 L22: 5.6670 REMARK 3 L33: 2.7181 L12: -7.0253 REMARK 3 L13: -1.4618 L23: 2.1819 REMARK 3 S TENSOR REMARK 3 S11: -0.8123 S12: -0.6997 S13: -1.7382 REMARK 3 S21: 0.0088 S22: 1.7636 S23: 2.7344 REMARK 3 S31: 2.4437 S32: -1.3361 S33: -0.7760 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 218 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9408 -23.5108 15.7205 REMARK 3 T TENSOR REMARK 3 T11: 1.9579 T22: 2.1569 REMARK 3 T33: 1.7065 T12: -0.4045 REMARK 3 T13: -0.5604 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 8.4960 L22: 9.5096 REMARK 3 L33: 1.6599 L12: 5.1088 REMARK 3 L13: -0.9239 L23: -0.0782 REMARK 3 S TENSOR REMARK 3 S11: 1.0340 S12: -1.9032 S13: 1.3719 REMARK 3 S21: 0.3662 S22: -1.6277 S23: -0.6082 REMARK 3 S31: -0.3982 S32: 0.0897 S33: 0.1457 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN C AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5055 26.8730 -54.9199 REMARK 3 T TENSOR REMARK 3 T11: 1.4103 T22: 2.2338 REMARK 3 T33: 0.9165 T12: 0.1324 REMARK 3 T13: -0.0533 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 3.4946 L22: 5.8912 REMARK 3 L33: 0.0530 L12: 2.8115 REMARK 3 L13: 0.1998 L23: 0.5502 REMARK 3 S TENSOR REMARK 3 S11: 0.4429 S12: 0.8134 S13: 1.0675 REMARK 3 S21: -1.6137 S22: 1.1874 S23: 2.0401 REMARK 3 S31: 0.1861 S32: 0.7685 S33: -1.1980 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14997 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 33.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.010 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YQ8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEGMME5000, 10% DMSO, 10% MPD, 0.1 REMARK 280 M MES, PH 6.0, 5MM (PRO-PRO-GLY)3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 117.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 117.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 240 REMARK 465 VAL A 241 REMARK 465 ASN A 242 REMARK 465 LYS A 243 REMARK 465 SER A 244 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 PRO B 2 REMARK 465 GLY B 3 REMARK 465 PHE B 4 REMARK 465 PHE B 5 REMARK 465 THR B 6 REMARK 465 GLY B 134 REMARK 465 ASN B 135 REMARK 465 LEU B 136 REMARK 465 PRO B 137 REMARK 465 GLY B 138 REMARK 465 VAL B 139 REMARK 465 LYS B 140 REMARK 465 HIS B 141 REMARK 465 LYS B 142 REMARK 465 SER B 143 REMARK 465 PHE B 144 REMARK 465 LEU B 145 REMARK 465 THR B 146 REMARK 465 GLN B 200 REMARK 465 GLN B 201 REMARK 465 GLY B 202 REMARK 465 ASP B 203 REMARK 465 MET B 235 REMARK 465 ALA B 236 REMARK 465 LYS B 237 REMARK 465 GLU B 238 REMARK 465 LYS B 239 REMARK 465 ASP B 240 REMARK 465 VAL B 241 REMARK 465 ASN B 242 REMARK 465 LYS B 243 REMARK 465 SER B 244 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 101 OE1 GLU B 82 1.98 REMARK 500 O PHE A 60 ND2 ASN A 66 2.08 REMARK 500 OE1 GLU A 82 NH2 ARG B 101 2.13 REMARK 500 NZ LYS A 69 OD2 ASP B 149 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 120 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 LEU A 120 CB - CG - CD2 ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO B 219 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO B 219 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 70.87 -157.20 REMARK 500 THR A 76 -53.51 -121.71 REMARK 500 ASN A 106 -166.67 -115.08 REMARK 500 ASN A 135 47.49 -79.62 REMARK 500 GLU A 238 30.07 -88.08 REMARK 500 ASP B 56 86.12 -155.49 REMARK 500 ASN B 106 -165.59 -122.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 137 GLY A 138 -137.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BT8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO FORM OF N-TERMINAL DOMAIN AND PEPTIDE REMARK 900 SUBSTRATE BINDING DOMAIN OF PROLYL- 4 HYDROXYLASE TYPE I FROM HUMAN REMARK 900 RELATED ID: 4BT9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTIDE(PRO-PRO-GLY)3 BOUND COMPLEX OF N- REMARK 900 TERMINAL DOMAIN AND PEPTIDE SUBSTRATE BINDING DOMAIN OF PROLYL-4 REMARK 900 HYDROXYLASE (RESIDUES 1-238 ) TYPE I FROM HUMAN REMARK 900 RELATED ID: 4BTB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PEPTIDE(PRO)9 BOUND COMPLEX OF N-TERMINAL REMARK 900 DOMAIN AND PEPTIDE SUBSTRATE BINDING DOMAIN OF PROLYL-4 HYDROXYLASE REMARK 900 (RESIDUES 1-238) TYPE I FROM HUMAN DBREF 4BTA A 1 244 UNP P13674 P4HA1_HUMAN 18 261 DBREF 4BTA B 1 244 UNP P13674 P4HA1_HUMAN 18 261 DBREF 4BTA C 1 9 PDB 4BTA 4BTA 1 9 SEQADV 4BTA MET A -6 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS A -5 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS A -4 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS A -3 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS A -2 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS A -1 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS A 0 UNP P13674 EXPRESSION TAG SEQADV 4BTA MET B -6 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS B -5 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS B -4 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS B -3 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS B -2 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS B -1 UNP P13674 EXPRESSION TAG SEQADV 4BTA HIS B 0 UNP P13674 EXPRESSION TAG SEQRES 1 A 251 MET HIS HIS HIS HIS HIS HIS HIS PRO GLY PHE PHE THR SEQRES 2 A 251 SER ILE GLY GLN MET THR ASP LEU ILE HIS THR GLU LYS SEQRES 3 A 251 ASP LEU VAL THR SER LEU LYS ASP TYR ILE LYS ALA GLU SEQRES 4 A 251 GLU ASP LYS LEU GLU GLN ILE LYS LYS TRP ALA GLU LYS SEQRES 5 A 251 LEU ASP ARG LEU THR SER THR ALA THR LYS ASP PRO GLU SEQRES 6 A 251 GLY PHE VAL GLY HIS PRO VAL ASN ALA PHE LYS LEU MET SEQRES 7 A 251 LYS ARG LEU ASN THR GLU TRP SER GLU LEU GLU ASN LEU SEQRES 8 A 251 VAL LEU LYS ASP MET SER ASP GLY PHE ILE SER ASN LEU SEQRES 9 A 251 THR ILE GLN ARG GLN TYR PHE PRO ASN ASP GLU ASP GLN SEQRES 10 A 251 VAL GLY ALA ALA LYS ALA LEU LEU ARG LEU GLN ASP THR SEQRES 11 A 251 TYR ASN LEU ASP THR ASP THR ILE SER LYS GLY ASN LEU SEQRES 12 A 251 PRO GLY VAL LYS HIS LYS SER PHE LEU THR ALA GLU ASP SEQRES 13 A 251 CYS PHE GLU LEU GLY LYS VAL ALA TYR THR GLU ALA ASP SEQRES 14 A 251 TYR TYR HIS THR GLU LEU TRP MET GLU GLN ALA LEU ARG SEQRES 15 A 251 GLN LEU ASP GLU GLY GLU ILE SER THR ILE ASP LYS VAL SEQRES 16 A 251 SER VAL LEU ASP TYR LEU SER TYR ALA VAL TYR GLN GLN SEQRES 17 A 251 GLY ASP LEU ASP LYS ALA LEU LEU LEU THR LYS LYS LEU SEQRES 18 A 251 LEU GLU LEU ASP PRO GLU HIS GLN ARG ALA ASN GLY ASN SEQRES 19 A 251 LEU LYS TYR PHE GLU TYR ILE MET ALA LYS GLU LYS ASP SEQRES 20 A 251 VAL ASN LYS SER SEQRES 1 B 251 MET HIS HIS HIS HIS HIS HIS HIS PRO GLY PHE PHE THR SEQRES 2 B 251 SER ILE GLY GLN MET THR ASP LEU ILE HIS THR GLU LYS SEQRES 3 B 251 ASP LEU VAL THR SER LEU LYS ASP TYR ILE LYS ALA GLU SEQRES 4 B 251 GLU ASP LYS LEU GLU GLN ILE LYS LYS TRP ALA GLU LYS SEQRES 5 B 251 LEU ASP ARG LEU THR SER THR ALA THR LYS ASP PRO GLU SEQRES 6 B 251 GLY PHE VAL GLY HIS PRO VAL ASN ALA PHE LYS LEU MET SEQRES 7 B 251 LYS ARG LEU ASN THR GLU TRP SER GLU LEU GLU ASN LEU SEQRES 8 B 251 VAL LEU LYS ASP MET SER ASP GLY PHE ILE SER ASN LEU SEQRES 9 B 251 THR ILE GLN ARG GLN TYR PHE PRO ASN ASP GLU ASP GLN SEQRES 10 B 251 VAL GLY ALA ALA LYS ALA LEU LEU ARG LEU GLN ASP THR SEQRES 11 B 251 TYR ASN LEU ASP THR ASP THR ILE SER LYS GLY ASN LEU SEQRES 12 B 251 PRO GLY VAL LYS HIS LYS SER PHE LEU THR ALA GLU ASP SEQRES 13 B 251 CYS PHE GLU LEU GLY LYS VAL ALA TYR THR GLU ALA ASP SEQRES 14 B 251 TYR TYR HIS THR GLU LEU TRP MET GLU GLN ALA LEU ARG SEQRES 15 B 251 GLN LEU ASP GLU GLY GLU ILE SER THR ILE ASP LYS VAL SEQRES 16 B 251 SER VAL LEU ASP TYR LEU SER TYR ALA VAL TYR GLN GLN SEQRES 17 B 251 GLY ASP LEU ASP LYS ALA LEU LEU LEU THR LYS LYS LEU SEQRES 18 B 251 LEU GLU LEU ASP PRO GLU HIS GLN ARG ALA ASN GLY ASN SEQRES 19 B 251 LEU LYS TYR PHE GLU TYR ILE MET ALA LYS GLU LYS ASP SEQRES 20 B 251 VAL ASN LYS SER SEQRES 1 C 9 PRO PRO GLY PRO PRO GLY PRO PRO GLY HELIX 1 1 GLY A 3 LYS A 55 1 53 HELIX 2 2 ASP A 56 HIS A 63 1 8 HELIX 3 3 HIS A 63 THR A 76 1 14 HELIX 4 4 THR A 76 LYS A 87 1 12 HELIX 5 5 SER A 90 ARG A 101 1 12 HELIX 6 6 GLN A 102 PHE A 104 5 3 HELIX 7 7 ASN A 106 ASN A 125 1 20 HELIX 8 8 ASP A 127 LYS A 133 1 7 HELIX 9 9 THR A 146 GLU A 160 1 15 HELIX 10 10 ASP A 162 GLU A 179 1 18 HELIX 11 11 ASP A 186 GLN A 201 1 16 HELIX 12 12 ASP A 203 ASP A 218 1 16 HELIX 13 13 HIS A 221 GLU A 238 1 18 HELIX 14 14 ILE B 8 ASP B 56 1 49 HELIX 15 15 ASP B 56 HIS B 63 1 8 HELIX 16 16 HIS B 63 THR B 76 1 14 HELIX 17 17 THR B 76 LYS B 87 1 12 HELIX 18 18 SER B 90 ARG B 101 1 12 HELIX 19 19 GLN B 102 PHE B 104 5 3 HELIX 20 20 ASN B 106 TYR B 124 1 19 HELIX 21 21 ASP B 127 LYS B 133 1 7 HELIX 22 22 ALA B 147 GLU B 160 1 14 HELIX 23 23 ASP B 162 GLU B 179 1 18 HELIX 24 24 ASP B 186 TYR B 199 1 14 HELIX 25 25 LEU B 204 ASP B 218 1 15 HELIX 26 26 HIS B 221 ILE B 234 1 14 CISPEP 1 LYS A 140 HIS A 141 0 24.11 CISPEP 2 PRO C 8 GLY C 9 0 -7.26 CRYST1 234.660 47.850 60.290 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004261 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016586 0.00000