HEADER HYDROLASE 19-JUN-13 4BTV TITLE STRUCTURE OF PHAZ7 PHB DEPOLYMERASE IN COMPLEX WITH 3HB TRIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHB DEPOLYMERASE PHAZ7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 39-380; COMPND 5 EC: 3.1.1.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAUCIMONAS LEMOIGNEI; SOURCE 3 ORGANISM_TAXID: 29443; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: WB800 KEYWDS HYDROLASE, CATALYTIC TRIAD EXPDTA X-RAY DIFFRACTION AUTHOR S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU,D.JENDROSSEK REVDAT 4 17-JUL-19 4BTV 1 REMARK REVDAT 3 08-MAY-19 4BTV 1 REMARK REVDAT 2 25-DEC-13 4BTV 1 JRNL REVDAT 1 18-SEP-13 4BTV 0 JRNL AUTH D.JENDROSSEK,S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU JRNL TITL BIOCHEMICAL ANALYSIS AND STRUCTURE DETERMINATION OF JRNL TITL 2 PAUCIMONAS LEMOIGNEI POLY(3-HYDROXYBUTYRATE) (PHB) JRNL TITL 3 DEPOLYMERASE PHAZ7 MUTEINS REVEAL THE PHB BINDING SITE AND JRNL TITL 4 DETAILS OF SUBSTRATE-ENZYME INTERACTIONS. JRNL REF MOL.MICROBIOL. V. 90 649 2013 JRNL REFN ISSN 0950-382X JRNL PMID 24007310 JRNL DOI 10.1111/MMI.12391 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 83783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.158 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8500 - 4.9295 0.93 2600 137 0.1620 0.1685 REMARK 3 2 4.9295 - 3.9226 0.96 2645 139 0.1156 0.1212 REMARK 3 3 3.9226 - 3.4296 0.96 2614 138 0.1198 0.1203 REMARK 3 4 3.4296 - 3.1174 0.98 2685 141 0.1195 0.1567 REMARK 3 5 3.1174 - 2.8947 0.97 2697 142 0.1229 0.1240 REMARK 3 6 2.8947 - 2.7245 0.98 2687 142 0.1164 0.1552 REMARK 3 7 2.7245 - 2.5883 0.98 2669 140 0.1120 0.1216 REMARK 3 8 2.5883 - 2.4759 0.98 2716 143 0.1156 0.1458 REMARK 3 9 2.4759 - 2.3807 0.98 2723 144 0.1190 0.1319 REMARK 3 10 2.3807 - 2.2987 0.98 2668 140 0.1266 0.1593 REMARK 3 11 2.2987 - 2.2269 0.95 2596 137 0.1534 0.1932 REMARK 3 12 2.2269 - 2.1633 0.98 2713 142 0.1245 0.1378 REMARK 3 13 2.1633 - 2.1064 0.98 2682 142 0.1193 0.1422 REMARK 3 14 2.1064 - 2.0551 0.99 2688 141 0.1191 0.1398 REMARK 3 15 2.0551 - 2.0084 0.98 2678 141 0.1254 0.1494 REMARK 3 16 2.0084 - 1.9657 0.99 2729 144 0.1282 0.1702 REMARK 3 17 1.9657 - 1.9264 0.98 2689 141 0.1469 0.1556 REMARK 3 18 1.9264 - 1.8901 0.97 2652 140 0.1659 0.2053 REMARK 3 19 1.8901 - 1.8564 0.99 2687 141 0.1368 0.1834 REMARK 3 20 1.8564 - 1.8249 0.98 2753 145 0.1442 0.1730 REMARK 3 21 1.8249 - 1.7955 0.98 2612 137 0.1452 0.2041 REMARK 3 22 1.7955 - 1.7679 0.98 2740 145 0.1457 0.2195 REMARK 3 23 1.7679 - 1.7419 0.98 2724 143 0.1581 0.1934 REMARK 3 24 1.7419 - 1.7174 0.98 2638 139 0.1583 0.1992 REMARK 3 25 1.7174 - 1.6942 0.99 2739 144 0.1520 0.2058 REMARK 3 26 1.6942 - 1.6722 0.98 2686 141 0.1542 0.2020 REMARK 3 27 1.6722 - 1.6513 0.98 2636 139 0.1605 0.1873 REMARK 3 28 1.6513 - 1.6314 0.98 2751 145 0.1625 0.2127 REMARK 3 29 1.6314 - 1.6125 0.98 2698 142 0.1729 0.2132 REMARK 3 30 1.6125 - 1.5944 0.67 1798 95 0.1870 0.2160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5124 REMARK 3 ANGLE : 1.090 6962 REMARK 3 CHIRALITY : 0.060 736 REMARK 3 PLANARITY : 0.005 898 REMARK 3 DIHEDRAL : 15.409 1782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOUR DIFFUSION. 0.1 M REMARK 280 NAOAC (PH 5.0), 0.2 M NACL, 20% W/V PEG 6000, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 99.68700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 281 REMARK 465 GLN A 282 REMARK 465 ALA A 283 REMARK 465 ASP A 284 REMARK 465 TYR A 285 REMARK 465 ASP A 286 REMARK 465 TRP A 287 REMARK 465 ALA A 288 REMARK 465 ASP A 289 REMARK 465 GLY A 290 REMARK 465 MET A 291 REMARK 465 PRO A 292 REMARK 465 TYR A 293 REMARK 465 ASN A 294 REMARK 465 THR B 281 REMARK 465 GLN B 282 REMARK 465 ALA B 283 REMARK 465 ASP B 284 REMARK 465 TYR B 285 REMARK 465 ASP B 286 REMARK 465 TRP B 287 REMARK 465 ALA B 288 REMARK 465 ASP B 289 REMARK 465 GLY B 290 REMARK 465 MET B 291 REMARK 465 PRO B 292 REMARK 465 TYR B 293 REMARK 465 GLN B 344 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 279 CG OD1 ND2 REMARK 470 ASN B 343 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2267 O HOH B 2482 2.07 REMARK 500 O HOH B 2258 O HOH B 2261 2.09 REMARK 500 O HOH B 2162 O HOH B 2322 2.11 REMARK 500 O HOH B 2258 O HOH B 2458 2.11 REMARK 500 O HOH B 2458 O HOH B 2459 2.11 REMARK 500 O HOH A 2160 O HOH A 2170 2.12 REMARK 500 O HOH B 2039 O HOH B 2083 2.14 REMARK 500 O HOH B 2210 O HOH B 2520 2.14 REMARK 500 O HOH B 2018 O HOH B 2271 2.15 REMARK 500 O HOH A 2148 O HOH A 2174 2.15 REMARK 500 OE2 GLU A 333 O HOH A 2508 2.15 REMARK 500 O HOH B 2321 O HOH B 2329 2.15 REMARK 500 O HOH B 2267 O HOH B 2268 2.16 REMARK 500 O HOH B 2027 O HOH B 2031 2.16 REMARK 500 O HOH B 2267 O HOH B 2269 2.17 REMARK 500 O HOH A 2238 O HOH A 2243 2.18 REMARK 500 O HOH B 2261 O HOH B 2263 2.18 REMARK 500 O HOH B 2531 O HOH B 2532 2.19 REMARK 500 O HOH B 2340 O HOH B 2341 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2039 O HOH B 2332 1554 2.06 REMARK 500 O HOH B 2263 O HOH B 2269 1455 2.11 REMARK 500 O HOH A 2095 O HOH A 2418 1556 2.17 REMARK 500 O HOH B 2259 O HOH B 2525 1455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 84.16 -151.27 REMARK 500 CYS A 36 -177.97 -172.42 REMARK 500 ALA A 136 -125.97 56.47 REMARK 500 ALA A 177 44.83 -140.85 REMARK 500 ALA A 181 59.62 -156.16 REMARK 500 SER A 186 -153.66 -86.39 REMARK 500 ASN A 210 82.68 -160.37 REMARK 500 ALA B 23 82.74 -152.72 REMARK 500 ALA B 136 -128.71 56.96 REMARK 500 ARG B 156 -62.09 -97.51 REMARK 500 ALA B 181 60.77 -150.90 REMARK 500 SER B 186 -154.60 -84.71 REMARK 500 ASN B 210 82.10 -155.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2228 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2242 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2243 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2247 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2250 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2290 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B2018 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B2102 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B2147 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B2167 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B2194 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B2195 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B2202 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B2263 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH B2271 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B2291 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RB3 A 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RB3 B 1343 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BVJ RELATED DB: PDB REMARK 900 STRUCTURE OF Y105A MUTANT OF PHAZ7 PHB DEPOLYMERASE REMARK 900 RELATED ID: 4BVK RELATED DB: PDB REMARK 900 STRUCTURE OF Y190E MUTANT OF PHAZ7 PHB DEPOLYMERASE REMARK 900 RELATED ID: 4BVL RELATED DB: PDB REMARK 900 STRUCTURE OF 202-208 DELETION MUTANT OF PHAZ7 PHB DEPOLYMERASE DBREF 4BTV A 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 DBREF 4BTV B 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 SEQADV 4BTV ALA A 136 UNP Q939Q9 SER 174 ENGINEERED MUTATION SEQADV 4BTV ALA B 136 UNP Q939Q9 SER 174 ENGINEERED MUTATION SEQRES 1 A 344 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 A 344 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 A 344 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 A 344 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 A 344 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 A 344 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 A 344 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 A 344 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 A 344 TYR HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 A 344 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 A 344 ASP ILE VAL ALA HIS ALA MET GLY VAL SER MET SER LEU SEQRES 12 A 344 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 A 344 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 A 344 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 A 344 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 A 344 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 A 344 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 A 344 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 A 344 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 A 344 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 A 344 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 A 344 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 A 344 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 A 344 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 A 344 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 A 344 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 A 344 LYS ALA ALA TYR ASN GLN SEQRES 1 B 344 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 B 344 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 B 344 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 B 344 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 B 344 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 B 344 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 B 344 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 B 344 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 B 344 TYR HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 B 344 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 B 344 ASP ILE VAL ALA HIS ALA MET GLY VAL SER MET SER LEU SEQRES 12 B 344 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 B 344 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 B 344 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 B 344 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 B 344 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 B 344 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 B 344 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 B 344 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 B 344 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 B 344 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 B 344 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 B 344 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 B 344 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 B 344 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 B 344 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 B 344 LYS ALA ALA TYR ASN GLN HET RB3 A1345 20 HET RB3 B1343 20 HETNAM RB3 (1R)-3-{[(1R)-3-METHOXY-1-METHYL-3-OXOPROPYL]OXY}-1- HETNAM 2 RB3 METHYL-3-OXOPROPYL (3R)-3-HYDROXYBUTANOATE HETSYN RB3 METHYL (3R)-3-{[(3R)-3-{[(3R)-3- HETSYN 2 RB3 HYDROXYBUTANOYL]OXY}BUTANOYL]OXY}BUTANOATE FORMUL 3 RB3 2(C13 H22 O7) FORMUL 5 HOH *1103(H2 O) HELIX 1 1 ASN A 52 MET A 58 5 7 HELIX 2 2 SER A 72 ARG A 80 1 9 HELIX 3 3 SER A 94 GLY A 99 1 6 HELIX 4 4 SER A 100 ASN A 104 5 5 HELIX 5 5 SER A 107 GLY A 126 1 20 HELIX 6 6 ALA A 136 ASN A 150 1 15 HELIX 7 7 ASN A 151 THR A 153 5 3 HELIX 8 8 SER A 170 GLY A 175 1 6 HELIX 9 9 ALA A 181 GLY A 185 5 5 HELIX 10 10 SER A 220 ARG A 222 5 3 HELIX 11 11 ASP A 223 ARG A 228 1 6 HELIX 12 12 ALA A 238 ASP A 242 5 5 HELIX 13 13 ALA A 247 PHE A 251 5 5 HELIX 14 14 GLY A 254 ALA A 258 5 5 HELIX 15 15 GLY A 296 THR A 301 5 6 HELIX 16 16 PHE A 307 ASN A 312 1 6 HELIX 17 17 THR A 313 THR A 323 1 11 HELIX 18 18 THR A 326 ALA A 332 5 7 HELIX 19 19 ASN B 52 MET B 58 5 7 HELIX 20 20 SER B 72 ARG B 80 1 9 HELIX 21 21 SER B 94 GLY B 99 1 6 HELIX 22 22 SER B 100 ASN B 104 5 5 HELIX 23 23 SER B 107 GLY B 126 1 20 HELIX 24 24 ALA B 136 ASN B 150 1 15 HELIX 25 25 ASN B 151 THR B 153 5 3 HELIX 26 26 SER B 170 GLY B 175 1 6 HELIX 27 27 ALA B 181 GLY B 185 5 5 HELIX 28 28 SER B 220 ARG B 222 5 3 HELIX 29 29 ASP B 223 ARG B 228 1 6 HELIX 30 30 ALA B 238 ASP B 242 5 5 HELIX 31 31 ALA B 247 PHE B 251 5 5 HELIX 32 32 GLY B 254 ALA B 258 5 5 HELIX 33 33 GLY B 296 THR B 300 5 5 HELIX 34 34 PHE B 307 ASN B 312 1 6 HELIX 35 35 THR B 313 THR B 323 1 11 HELIX 36 36 THR B 326 ALA B 332 5 7 SHEET 1 AA 9 THR A 16 TYR A 18 0 SHEET 2 AA 9 GLY A 30 GLY A 32 1 O GLY A 30 N GLN A 17 SHEET 3 AA 9 ILE A 87 VAL A 90 -1 O GLY A 89 N PHE A 31 SHEET 4 AA 9 VAL A 43 ILE A 46 1 O VAL A 43 N PHE A 88 SHEET 5 AA 9 VAL A 130 HIS A 135 1 O ASP A 131 N ILE A 44 SHEET 6 AA 9 VAL A 155 LEU A 161 1 N ARG A 156 O VAL A 130 SHEET 7 AA 9 SER A 232 SER A 237 1 O SER A 232 N PHE A 158 SHEET 8 AA 9 VAL A 268 ASN A 273 1 N LYS A 269 O PHE A 233 SHEET 9 AA 9 ALA A 340 ALA A 341 -1 O ALA A 340 N ASN A 273 SHEET 1 AB 2 GLY A 201 TYR A 203 0 SHEET 2 AB 2 VAL A 206 VAL A 208 -1 O VAL A 206 N TYR A 203 SHEET 1 BA 9 THR B 16 TYR B 18 0 SHEET 2 BA 9 GLY B 30 GLY B 32 1 O GLY B 30 N GLN B 17 SHEET 3 BA 9 ILE B 87 VAL B 90 -1 O GLY B 89 N PHE B 31 SHEET 4 BA 9 VAL B 43 ILE B 46 1 O VAL B 43 N PHE B 88 SHEET 5 BA 9 VAL B 130 HIS B 135 1 O ASP B 131 N ILE B 44 SHEET 6 BA 9 VAL B 155 LEU B 161 1 N ARG B 156 O VAL B 130 SHEET 7 BA 9 SER B 232 SER B 237 1 O SER B 232 N PHE B 158 SHEET 8 BA 9 VAL B 268 ASN B 273 1 N LYS B 269 O PHE B 233 SHEET 9 BA 9 ALA B 340 ALA B 341 -1 O ALA B 340 N ASN B 273 SHEET 1 BB 2 GLY B 201 TYR B 203 0 SHEET 2 BB 2 VAL B 206 VAL B 208 -1 O VAL B 206 N TYR B 203 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.03 SSBOND 2 CYS A 36 CYS A 85 1555 1555 2.03 SSBOND 3 CYS A 171 CYS A 184 1555 1555 2.04 SSBOND 4 CYS A 246 CYS A 255 1555 1555 2.06 SSBOND 5 CYS A 325 CYS A 330 1555 1555 2.04 SSBOND 6 CYS B 3 CYS B 11 1555 1555 2.05 SSBOND 7 CYS B 36 CYS B 85 1555 1555 2.02 SSBOND 8 CYS B 171 CYS B 184 1555 1555 2.03 SSBOND 9 CYS B 246 CYS B 255 1555 1555 2.05 SSBOND 10 CYS B 325 CYS B 330 1555 1555 2.05 SITE 1 AC1 9 TYR A 176 SER A 186 GLN A 187 ASN A 188 SITE 2 AC1 9 TYR A 189 TYR A 190 PHE A 195 GLY A 196 SITE 3 AC1 9 HOH A2527 SITE 1 AC2 10 TYR B 176 PRO B 182 SER B 186 ASN B 188 SITE 2 AC2 10 TYR B 189 TYR B 190 PHE B 195 GLY B 196 SITE 3 AC2 10 HOH B2423 HOH B2424 CRYST1 41.337 199.374 44.424 90.00 114.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024191 0.000000 0.010892 0.00000 SCALE2 0.000000 0.005016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024687 0.00000