HEADER OXIDOREDUCTASE 19-JUN-13 4BTY TITLE CRYSTAL STRUCTURE OF HUMAN VASCULAR ADHESION PROTEIN-1 IN COMPLEX WITH TITLE 2 PYRIDAZINONE INHIBITORS CAVEAT 4BTY NAG D 1 HAS WRONG CHIRALITY AT ATOM C1 MAN D 4 HAS WRONG CAVEAT 2 4BTY CHIRALITY AT ATOM C1 MAN D 5 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 4BTY NAG E 2 HAS WRONG CHIRALITY AT ATOM C1 NAG A 1768 HAS WRONG CAVEAT 4 4BTY CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PRIMARY AMINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COPPER AMINE OXIDASE, HPAO, SEMICARBAZIDE-SENSITIVE AMINE COMPND 5 OXIDASE, SSAO, VASCULAR ADHESION PROTEIN 1, VAP-1; COMPND 6 EC: 1.4.3.21; COMPND 7 OTHER_DETAILS: TYR471 POST TRANSLATIONALLY MODIFIED TO TOPAQUINONE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: SERUM KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.BLIGT-LINDEN,M.PIHLAVISTO,I.SZATMARI,Z.OTWINOWSKI,D.J.SMITH, AUTHOR 2 L.LAZAR,F.FULOP,T.A.SALMINEN REVDAT 5 20-DEC-23 4BTY 1 HETSYN SHEET REVDAT 4 29-JUL-20 4BTY 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 15-JAN-14 4BTY 1 JRNL REVDAT 2 25-DEC-13 4BTY 1 REMARK LINK CONECT REVDAT 1 18-DEC-13 4BTY 0 JRNL AUTH E.BLIGT-LINDEN,M.PIHLAVISTO,I.SZATMARI,Z.OTWINOWSKI, JRNL AUTH 2 D.J.SMITH,L.LAZAR,F.FULOP,T.A.SALMINEN JRNL TITL NOVEL PYRIDAZINONE INHIBITORS FOR VASCULAR ADHESION PROTEIN- JRNL TITL 2 1 (VAP-1): OLD TARGET - NEW INHIBITION MODE. JRNL REF J.MED.CHEM. V. 56 9837 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 24304424 JRNL DOI 10.1021/JM401372D REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 76.2 REMARK 3 NUMBER OF REFLECTIONS : 43449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 428 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 273 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 1.60000 REMARK 3 B12 (A**2) : -0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.438 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.977 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11865 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 10672 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16225 ; 2.629 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 24429 ; 0.918 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1416 ; 9.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 559 ;33.536 ;23.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1659 ;20.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 77 ;19.073 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1727 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13527 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2944 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5676 ; 5.482 ; 8.381 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5675 ; 5.481 ; 8.380 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7084 ; 8.451 ;12.566 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 7085 ; 8.450 ;12.568 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6189 ; 6.084 ; 8.931 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6190 ; 6.083 ; 8.931 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9079 ; 9.388 ;13.230 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 49723 ;13.991 ;80.804 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 49721 ;13.991 ;80.806 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4BTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43449 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.170 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.29000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4, MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1US1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6-0.75 M NA/K TARTRATE, 0.2 M NACL, REMARK 280 0.1 M HEPES PH 7.4-7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.44000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.72000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.08000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.36000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 181.80000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 145.44000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.72000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.36000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.08000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 181.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 ARG A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 GLY A 32 REMARK 465 GLY A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 SER A 36 REMARK 465 GLN A 37 REMARK 465 LEU A 38 REMARK 465 PRO A 39 REMARK 465 HIS A 40 REMARK 465 CYS A 41 REMARK 465 PRO A 42 REMARK 465 SER A 43 REMARK 465 VAL A 44 REMARK 465 SER A 45 REMARK 465 PRO A 46 REMARK 465 SER A 47 REMARK 465 ALA A 48 REMARK 465 GLN A 49 REMARK 465 PRO A 50 REMARK 465 TRP A 51 REMARK 465 THR A 52 REMARK 465 GLY B 27 REMARK 465 ARG B 28 REMARK 465 GLY B 29 REMARK 465 GLY B 30 REMARK 465 ASP B 31 REMARK 465 GLY B 32 REMARK 465 GLY B 33 REMARK 465 GLU B 34 REMARK 465 PRO B 35 REMARK 465 SER B 36 REMARK 465 GLN B 37 REMARK 465 LEU B 38 REMARK 465 PRO B 39 REMARK 465 HIS B 40 REMARK 465 CYS B 41 REMARK 465 PRO B 42 REMARK 465 SER B 43 REMARK 465 VAL B 44 REMARK 465 SER B 45 REMARK 465 PRO B 46 REMARK 465 SER B 47 REMARK 465 ALA B 48 REMARK 465 GLN B 49 REMARK 465 PRO B 50 REMARK 465 TRP B 51 REMARK 465 THR B 52 REMARK 465 HIS B 53 REMARK 465 PRO B 54 REMARK 465 GLY B 55 REMARK 465 GLN B 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ARG A 204 CZ NH1 NH2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 ARG B 204 NE CZ NH1 NH2 REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 BMA D 3 O5 MAN D 5 1.56 REMARK 500 ND2 ASN B 592 O5 NAG B 1772 1.62 REMARK 500 ND2 ASN B 592 C1 NAG B 1772 1.90 REMARK 500 O GLY A 205 N ASN A 207 2.10 REMARK 500 C6 BMA D 3 C1 MAN D 5 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 666 CG ASN A 666 ND2 0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 134 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 215 C - N - CA ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 529 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 PRO A 584 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 585 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP B 529 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 56 42.59 -101.36 REMARK 500 LEU A 59 -6.20 28.50 REMARK 500 THR A 76 -61.06 -20.77 REMARK 500 PRO A 81 83.74 -42.33 REMARK 500 SER A 117 174.89 -58.34 REMARK 500 SER A 150 13.63 -149.33 REMARK 500 ILE A 183 -78.62 -66.95 REMARK 500 PHE A 184 -8.67 -56.18 REMARK 500 GLU A 187 -66.60 -142.69 REMARK 500 PRO A 189 -51.54 -29.62 REMARK 500 TYR A 201 83.05 -69.94 REMARK 500 HIS A 203 88.17 -37.03 REMARK 500 ARG A 204 -123.61 176.24 REMARK 500 ARG A 206 63.44 -42.21 REMARK 500 ASN A 207 -67.43 -160.56 REMARK 500 ALA A 214 -113.98 -73.45 REMARK 500 LEU A 218 74.94 -166.77 REMARK 500 GLN A 219 145.78 137.14 REMARK 500 ASN A 232 94.26 -61.60 REMARK 500 HIS A 241 59.98 -98.03 REMARK 500 LYS A 252 -67.98 -91.22 REMARK 500 ALA A 253 152.57 -34.60 REMARK 500 GLN A 267 62.33 29.95 REMARK 500 GLN A 280 -78.66 -62.18 REMARK 500 PHE A 281 -59.42 -29.72 REMARK 500 ALA A 283 38.71 -65.45 REMARK 500 PRO A 292 -168.17 -56.35 REMARK 500 ASP A 293 -53.91 -157.26 REMARK 500 LEU A 302 17.45 -143.38 REMARK 500 PRO A 310 163.87 -26.95 REMARK 500 LEU A 334 -29.22 -140.29 REMARK 500 PRO A 347 154.72 -34.60 REMARK 500 ARG A 348 139.51 -170.07 REMARK 500 SER A 364 117.19 -164.42 REMARK 500 ALA A 378 -71.11 -38.95 REMARK 500 VAL A 402 -52.47 -125.74 REMARK 500 GLU A 418 53.36 36.97 REMARK 500 SER A 419 -165.29 -165.25 REMARK 500 TYR A 448 -65.89 61.79 REMARK 500 LEU A 469 -115.85 52.80 REMARK 500 ASP A 476 -124.21 -98.14 REMARK 500 THR A 477 121.77 112.49 REMARK 500 PRO A 481 -3.74 -56.94 REMARK 500 THR A 492 -143.95 -125.80 REMARK 500 ALA A 503 44.51 -79.42 REMARK 500 THR A 504 -151.01 -74.05 REMARK 500 VAL A 511 -49.01 -139.53 REMARK 500 SER A 512 -169.50 -129.46 REMARK 500 HIS A 514 -1.54 63.93 REMARK 500 SER A 554 56.76 -165.59 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 292 ASP A 293 -136.55 REMARK 500 LEU A 438 PRO A 439 146.81 REMARK 500 GLY B 162 PRO B 163 147.77 REMARK 500 LYS B 202 HIS B 203 -45.98 REMARK 500 THR B 213 ALA B 214 134.34 REMARK 500 ALA B 214 PRO B 215 145.62 REMARK 500 HIS B 480 PRO B 481 147.88 REMARK 500 LEU B 742 PRO B 743 -142.51 REMARK 500 SER B 761 HIS B 762 -141.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1772 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1762 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 520 NE2 REMARK 620 2 HIS A 522 NE2 94.3 REMARK 620 3 HIS A 684 ND1 92.0 137.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1763 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 529 OD1 REMARK 620 2 LEU A 530 O 95.7 REMARK 620 3 ASP A 531 OD1 77.5 77.0 REMARK 620 4 ASP A 673 OD1 87.3 159.0 83.4 REMARK 620 5 LEU A 674 O 88.3 86.7 157.0 114.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1764 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 572 OE1 REMARK 620 2 GLU A 572 OE2 44.7 REMARK 620 3 PHE A 663 O 68.1 95.0 REMARK 620 4 ASN A 665 OD1 57.4 96.5 78.6 REMARK 620 5 GLU A 667 OE2 76.4 71.0 139.8 66.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B1762 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 520 NE2 REMARK 620 2 HIS B 522 NE2 97.4 REMARK 620 3 HIS B 684 ND1 97.6 138.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1763 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 529 OD1 REMARK 620 2 LEU B 530 O 97.8 REMARK 620 3 ASP B 531 OD1 77.3 76.7 REMARK 620 4 ASP B 673 OD1 91.5 160.2 88.5 REMARK 620 5 LEU B 674 O 74.2 106.6 151.5 92.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1764 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 572 OE2 REMARK 620 2 GLU B 572 OE1 44.1 REMARK 620 3 PHE B 663 O 86.3 68.8 REMARK 620 4 ASN B 665 OD1 98.1 54.0 65.2 REMARK 620 5 GLU B 667 OE1 72.9 63.8 128.9 72.2 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BTW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN VASCULAR ADHESION PROTEIN-1 IN COMPLEX REMARK 900 WITH PYRIDAZINONE INHIBITORS REMARK 900 RELATED ID: 4BTX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN VASCULAR ADHESION PROTEIN-1 IN COMPLEX REMARK 900 WITH PYRIDAZINONE INHIBITORS DBREF 4BTY A 27 763 UNP Q16853 AOC3_HUMAN 27 763 DBREF 4BTY B 27 763 UNP Q16853 AOC3_HUMAN 27 763 SEQRES 1 A 737 GLY ARG GLY GLY ASP GLY GLY GLU PRO SER GLN LEU PRO SEQRES 2 A 737 HIS CYS PRO SER VAL SER PRO SER ALA GLN PRO TRP THR SEQRES 3 A 737 HIS PRO GLY GLN SER GLN LEU PHE ALA ASP LEU SER ARG SEQRES 4 A 737 GLU GLU LEU THR ALA VAL MET ARG PHE LEU THR GLN ARG SEQRES 5 A 737 LEU GLY PRO GLY LEU VAL ASP ALA ALA GLN ALA ARG PRO SEQRES 6 A 737 SER ASP ASN CYS VAL PHE SER VAL GLU LEU GLN LEU PRO SEQRES 7 A 737 PRO LYS ALA ALA ALA LEU ALA HIS LEU ASP ARG GLY SER SEQRES 8 A 737 PRO PRO PRO ALA ARG GLU ALA LEU ALA ILE VAL PHE PHE SEQRES 9 A 737 GLY ARG GLN PRO GLN PRO ASN VAL SER GLU LEU VAL VAL SEQRES 10 A 737 GLY PRO LEU PRO HIS PRO SER TYR MET ARG ASP VAL THR SEQRES 11 A 737 VAL GLU ARG HIS GLY GLY PRO LEU PRO TYR HIS ARG ARG SEQRES 12 A 737 PRO VAL LEU PHE GLN GLU TYR LEU ASP ILE ASP GLN MET SEQRES 13 A 737 ILE PHE ASN ARG GLU LEU PRO GLN ALA SER GLY LEU LEU SEQRES 14 A 737 HIS HIS CYS CYS PHE TYR LYS HIS ARG GLY ARG ASN LEU SEQRES 15 A 737 VAL THR MET THR THR ALA PRO ARG GLY LEU GLN SER GLY SEQRES 16 A 737 ASP ARG ALA THR TRP PHE GLY LEU TYR TYR ASN ILE SER SEQRES 17 A 737 GLY ALA GLY PHE PHE LEU HIS HIS VAL GLY LEU GLU LEU SEQRES 18 A 737 LEU VAL ASN HIS LYS ALA LEU ASP PRO ALA ARG TRP THR SEQRES 19 A 737 ILE GLN LYS VAL PHE TYR GLN GLY ARG TYR TYR ASP SER SEQRES 20 A 737 LEU ALA GLN LEU GLU ALA GLN PHE GLU ALA GLY LEU VAL SEQRES 21 A 737 ASN VAL VAL LEU ILE PRO ASP ASN GLY THR GLY GLY SER SEQRES 22 A 737 TRP SER LEU LYS SER PRO VAL PRO PRO GLY PRO ALA PRO SEQRES 23 A 737 PRO LEU GLN PHE TYR PRO GLN GLY PRO ARG PHE SER VAL SEQRES 24 A 737 GLN GLY SER ARG VAL ALA SER SER LEU TRP THR PHE SER SEQRES 25 A 737 PHE GLY LEU GLY ALA PHE SER GLY PRO ARG ILE PHE ASP SEQRES 26 A 737 VAL ARG PHE GLN GLY GLU ARG LEU VAL TYR GLU ILE SER SEQRES 27 A 737 LEU GLN GLU ALA LEU ALA ILE TYR GLY GLY ASN SER PRO SEQRES 28 A 737 ALA ALA MET THR THR ARG TYR VAL ASP GLY GLY PHE GLY SEQRES 29 A 737 MET GLY LYS TYR THR THR PRO LEU THR ARG GLY VAL ASP SEQRES 30 A 737 CYS PRO TYR LEU ALA THR TYR VAL ASP TRP HIS PHE LEU SEQRES 31 A 737 LEU GLU SER GLN ALA PRO LYS THR ILE ARG ASP ALA PHE SEQRES 32 A 737 CYS VAL PHE GLU GLN ASN GLN GLY LEU PRO LEU ARG ARG SEQRES 33 A 737 HIS HIS SER ASP LEU TYR SER HIS TYR PHE GLY GLY LEU SEQRES 34 A 737 ALA GLU THR VAL LEU VAL VAL ARG SER MET SER THR LEU SEQRES 35 A 737 LEU ASN TPQ ASP TYR VAL TRP ASP THR VAL PHE HIS PRO SEQRES 36 A 737 SER GLY ALA ILE GLU ILE ARG PHE TYR ALA THR GLY TYR SEQRES 37 A 737 ILE SER SER ALA PHE LEU PHE GLY ALA THR GLY LYS TYR SEQRES 38 A 737 GLY ASN GLN VAL SER GLU HIS THR LEU GLY THR VAL HIS SEQRES 39 A 737 THR HIS SER ALA HIS PHE LYS VAL ASP LEU ASP VAL ALA SEQRES 40 A 737 GLY LEU GLU ASN TRP VAL TRP ALA GLU ASP MET VAL PHE SEQRES 41 A 737 VAL PRO MET ALA VAL PRO TRP SER PRO GLU HIS GLN LEU SEQRES 42 A 737 GLN ARG LEU GLN VAL THR ARG LYS LEU LEU GLU MET GLU SEQRES 43 A 737 GLU GLN ALA ALA PHE LEU VAL GLY SER ALA THR PRO ARG SEQRES 44 A 737 TYR LEU TYR LEU ALA SER ASN HIS SER ASN LYS TRP GLY SEQRES 45 A 737 HIS PRO ARG GLY TYR ARG ILE GLN MET LEU SER PHE ALA SEQRES 46 A 737 GLY GLU PRO LEU PRO GLN ASN SER SER MET ALA ARG GLY SEQRES 47 A 737 PHE SER TRP GLU ARG TYR GLN LEU ALA VAL THR GLN ARG SEQRES 48 A 737 LYS GLU GLU GLU PRO SER SER SER SER VAL PHE ASN GLN SEQRES 49 A 737 ASN ASP PRO TRP ALA PRO THR VAL ASP PHE SER ASP PHE SEQRES 50 A 737 ILE ASN ASN GLU THR ILE ALA GLY LYS ASP LEU VAL ALA SEQRES 51 A 737 TRP VAL THR ALA GLY PHE LEU HIS ILE PRO HIS ALA GLU SEQRES 52 A 737 ASP ILE PRO ASN THR VAL THR VAL GLY ASN GLY VAL GLY SEQRES 53 A 737 PHE PHE LEU ARG PRO TYR ASN PHE PHE ASP GLU ASP PRO SEQRES 54 A 737 SER PHE TYR SER ALA ASP SER ILE TYR PHE ARG GLY ASP SEQRES 55 A 737 GLN ASP ALA GLY ALA CYS GLU VAL ASN PRO LEU ALA CYS SEQRES 56 A 737 LEU PRO GLN ALA ALA ALA CYS ALA PRO ASP LEU PRO ALA SEQRES 57 A 737 PHE SER HIS GLY GLY PHE SER HIS ASN SEQRES 1 B 737 GLY ARG GLY GLY ASP GLY GLY GLU PRO SER GLN LEU PRO SEQRES 2 B 737 HIS CYS PRO SER VAL SER PRO SER ALA GLN PRO TRP THR SEQRES 3 B 737 HIS PRO GLY GLN SER GLN LEU PHE ALA ASP LEU SER ARG SEQRES 4 B 737 GLU GLU LEU THR ALA VAL MET ARG PHE LEU THR GLN ARG SEQRES 5 B 737 LEU GLY PRO GLY LEU VAL ASP ALA ALA GLN ALA ARG PRO SEQRES 6 B 737 SER ASP ASN CYS VAL PHE SER VAL GLU LEU GLN LEU PRO SEQRES 7 B 737 PRO LYS ALA ALA ALA LEU ALA HIS LEU ASP ARG GLY SER SEQRES 8 B 737 PRO PRO PRO ALA ARG GLU ALA LEU ALA ILE VAL PHE PHE SEQRES 9 B 737 GLY ARG GLN PRO GLN PRO ASN VAL SER GLU LEU VAL VAL SEQRES 10 B 737 GLY PRO LEU PRO HIS PRO SER TYR MET ARG ASP VAL THR SEQRES 11 B 737 VAL GLU ARG HIS GLY GLY PRO LEU PRO TYR HIS ARG ARG SEQRES 12 B 737 PRO VAL LEU PHE GLN GLU TYR LEU ASP ILE ASP GLN MET SEQRES 13 B 737 ILE PHE ASN ARG GLU LEU PRO GLN ALA SER GLY LEU LEU SEQRES 14 B 737 HIS HIS CYS CYS PHE TYR LYS HIS ARG GLY ARG ASN LEU SEQRES 15 B 737 VAL THR MET THR THR ALA PRO ARG GLY LEU GLN SER GLY SEQRES 16 B 737 ASP ARG ALA THR TRP PHE GLY LEU TYR TYR ASN ILE SER SEQRES 17 B 737 GLY ALA GLY PHE PHE LEU HIS HIS VAL GLY LEU GLU LEU SEQRES 18 B 737 LEU VAL ASN HIS LYS ALA LEU ASP PRO ALA ARG TRP THR SEQRES 19 B 737 ILE GLN LYS VAL PHE TYR GLN GLY ARG TYR TYR ASP SER SEQRES 20 B 737 LEU ALA GLN LEU GLU ALA GLN PHE GLU ALA GLY LEU VAL SEQRES 21 B 737 ASN VAL VAL LEU ILE PRO ASP ASN GLY THR GLY GLY SER SEQRES 22 B 737 TRP SER LEU LYS SER PRO VAL PRO PRO GLY PRO ALA PRO SEQRES 23 B 737 PRO LEU GLN PHE TYR PRO GLN GLY PRO ARG PHE SER VAL SEQRES 24 B 737 GLN GLY SER ARG VAL ALA SER SER LEU TRP THR PHE SER SEQRES 25 B 737 PHE GLY LEU GLY ALA PHE SER GLY PRO ARG ILE PHE ASP SEQRES 26 B 737 VAL ARG PHE GLN GLY GLU ARG LEU VAL TYR GLU ILE SER SEQRES 27 B 737 LEU GLN GLU ALA LEU ALA ILE TYR GLY GLY ASN SER PRO SEQRES 28 B 737 ALA ALA MET THR THR ARG TYR VAL ASP GLY GLY PHE GLY SEQRES 29 B 737 MET GLY LYS TYR THR THR PRO LEU THR ARG GLY VAL ASP SEQRES 30 B 737 CYS PRO TYR LEU ALA THR TYR VAL ASP TRP HIS PHE LEU SEQRES 31 B 737 LEU GLU SER GLN ALA PRO LYS THR ILE ARG ASP ALA PHE SEQRES 32 B 737 CYS VAL PHE GLU GLN ASN GLN GLY LEU PRO LEU ARG ARG SEQRES 33 B 737 HIS HIS SER ASP LEU TYR SER HIS TYR PHE GLY GLY LEU SEQRES 34 B 737 ALA GLU THR VAL LEU VAL VAL ARG SER MET SER THR LEU SEQRES 35 B 737 LEU ASN TPQ ASP TYR VAL TRP ASP THR VAL PHE HIS PRO SEQRES 36 B 737 SER GLY ALA ILE GLU ILE ARG PHE TYR ALA THR GLY TYR SEQRES 37 B 737 ILE SER SER ALA PHE LEU PHE GLY ALA THR GLY LYS TYR SEQRES 38 B 737 GLY ASN GLN VAL SER GLU HIS THR LEU GLY THR VAL HIS SEQRES 39 B 737 THR HIS SER ALA HIS PHE LYS VAL ASP LEU ASP VAL ALA SEQRES 40 B 737 GLY LEU GLU ASN TRP VAL TRP ALA GLU ASP MET VAL PHE SEQRES 41 B 737 VAL PRO MET ALA VAL PRO TRP SER PRO GLU HIS GLN LEU SEQRES 42 B 737 GLN ARG LEU GLN VAL THR ARG LYS LEU LEU GLU MET GLU SEQRES 43 B 737 GLU GLN ALA ALA PHE LEU VAL GLY SER ALA THR PRO ARG SEQRES 44 B 737 TYR LEU TYR LEU ALA SER ASN HIS SER ASN LYS TRP GLY SEQRES 45 B 737 HIS PRO ARG GLY TYR ARG ILE GLN MET LEU SER PHE ALA SEQRES 46 B 737 GLY GLU PRO LEU PRO GLN ASN SER SER MET ALA ARG GLY SEQRES 47 B 737 PHE SER TRP GLU ARG TYR GLN LEU ALA VAL THR GLN ARG SEQRES 48 B 737 LYS GLU GLU GLU PRO SER SER SER SER VAL PHE ASN GLN SEQRES 49 B 737 ASN ASP PRO TRP ALA PRO THR VAL ASP PHE SER ASP PHE SEQRES 50 B 737 ILE ASN ASN GLU THR ILE ALA GLY LYS ASP LEU VAL ALA SEQRES 51 B 737 TRP VAL THR ALA GLY PHE LEU HIS ILE PRO HIS ALA GLU SEQRES 52 B 737 ASP ILE PRO ASN THR VAL THR VAL GLY ASN GLY VAL GLY SEQRES 53 B 737 PHE PHE LEU ARG PRO TYR ASN PHE PHE ASP GLU ASP PRO SEQRES 54 B 737 SER PHE TYR SER ALA ASP SER ILE TYR PHE ARG GLY ASP SEQRES 55 B 737 GLN ASP ALA GLY ALA CYS GLU VAL ASN PRO LEU ALA CYS SEQRES 56 B 737 LEU PRO GLN ALA ALA ALA CYS ALA PRO ASP LEU PRO ALA SEQRES 57 B 737 PHE SER HIS GLY GLY PHE SER HIS ASN MODRES 4BTY ASN A 137 ASN GLYCOSYLATION SITE MODRES 4BTY ASN A 232 ASN GLYCOSYLATION SITE MODRES 4BTY ASN A 294 ASN GLYCOSYLATION SITE MODRES 4BTY ASN A 592 ASN GLYCOSYLATION SITE MODRES 4BTY ASN A 666 ASN GLYCOSYLATION SITE MODRES 4BTY ASN B 137 ASN GLYCOSYLATION SITE MODRES 4BTY ASN B 232 ASN GLYCOSYLATION SITE MODRES 4BTY ASN B 666 ASN GLYCOSYLATION SITE MODRES 4BTY TPQ A 471 TYR MODRES 4BTY TPQ B 471 TYR HET TPQ A 471 14 HET TPQ B 471 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG E 1 14 HET NAG E 2 14 HET CU A1762 1 HET CA A1763 1 HET CA A1764 1 HET NAG A1767 14 HET NAG A1768 14 HET NAG A1769 14 HET NAG A1770 14 HET JWF A2000 33 HET CU B1762 1 HET CA B1763 1 HET CA B1764 1 HET NAG B1772 14 HET NAG B1773 14 HET JWF B2000 33 HETNAM TPQ 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION HETNAM JWF 5-[4-(4-METHYLPIPERAZIN-1-YL)PHENYLAMINO]-2-(4- HETNAM 2 JWF CHLOROPHENYL)-6-(1H-1,2,4-TRIAZOL-5-YL)-3(2H)- HETNAM 3 JWF PYRIDAZINONE HETSYN TPQ 5-(2-CARBOXY-2-AMINOETHYL)-4-HYDROXY-1,2-BENZOQUINONE; HETSYN 2 TPQ 2,4,5-TRIHYDROXYPHENYLALANINE QUINONE; TOPA QUINONE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 TPQ 2(C9 H9 N O5) FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 2(C6 H12 O6) FORMUL 6 CU 2(CU 2+) FORMUL 7 CA 4(CA 2+) FORMUL 13 JWF 2(C23 H23 CL N8 O) FORMUL 20 HOH *40(H2 O) HELIX 1 1 SER A 64 GLY A 80 1 17 HELIX 2 2 PRO A 105 ARG A 115 1 11 HELIX 3 3 VAL A 155 GLY A 161 1 7 HELIX 4 4 HIS A 167 ARG A 169 5 3 HELIX 5 5 LEU A 172 GLU A 187 1 16 HELIX 6 6 LEU A 188 GLN A 190 5 3 HELIX 7 7 ALA A 191 CYS A 199 1 9 HELIX 8 8 ASP A 255 TRP A 259 5 5 HELIX 9 9 LEU A 274 ALA A 283 1 10 HELIX 10 10 SER A 376 THR A 381 1 6 HELIX 11 11 GLY A 387 PHE A 389 5 3 HELIX 12 12 GLU A 572 GLN A 574 5 3 HELIX 13 13 MET A 621 GLU A 628 5 8 HELIX 14 14 ASP A 659 ILE A 664 5 6 HELIX 15 15 HIS A 687 ILE A 691 5 5 HELIX 16 16 ASP A 714 SER A 719 5 6 HELIX 17 17 ASN A 737 LEU A 742 5 6 HELIX 18 18 SER B 64 ARG B 78 1 15 HELIX 19 19 ASP B 85 ALA B 89 5 5 HELIX 20 20 PRO B 105 ARG B 115 1 11 HELIX 21 21 VAL B 155 GLY B 161 1 7 HELIX 22 22 HIS B 167 ARG B 169 5 3 HELIX 23 23 LEU B 172 ARG B 186 1 15 HELIX 24 24 GLU B 187 GLN B 190 5 4 HELIX 25 25 ALA B 191 PHE B 200 1 10 HELIX 26 26 GLY B 237 LEU B 240 5 4 HELIX 27 27 ASP B 255 TRP B 259 5 5 HELIX 28 28 SER B 273 ALA B 283 1 11 HELIX 29 29 SER B 376 THR B 382 1 7 HELIX 30 30 GLY B 387 PHE B 389 5 3 HELIX 31 31 MET B 621 SER B 626 5 6 HELIX 32 32 SER B 646 GLN B 650 5 5 HELIX 33 33 ASP B 659 ILE B 664 5 6 HELIX 34 34 HIS B 687 ILE B 691 5 5 HELIX 35 35 ASP B 714 SER B 719 5 6 HELIX 36 36 ASN B 737 CYS B 741 5 5 SHEET 1 AA 5 LEU A 83 VAL A 84 0 SHEET 2 AA 5 ASN A 94 GLN A 102 1 O ASN A 94 N VAL A 84 SHEET 3 AA 5 GLU A 123 PHE A 130 -1 O GLU A 123 N GLN A 102 SHEET 4 AA 5 ASN A 137 GLY A 144 -1 O ASN A 137 N PHE A 130 SHEET 5 AA 5 LEU A 164 PRO A 165 -1 O LEU A 164 N VAL A 138 SHEET 1 AB 2 LEU A 83 VAL A 84 0 SHEET 2 AB 2 ASN A 137 GLY A 144 -1 O ASN A 137 N PHE A 130 SHEET 1 AC 5 LEU A 208 THR A 212 0 SHEET 2 AC 5 ALA A 224 TYR A 231 -1 O GLY A 228 N MET A 211 SHEET 3 AC 5 HIS A 242 ASN A 250 -1 N VAL A 243 O LEU A 229 SHEET 4 AC 5 THR A 260 TYR A 266 -1 O THR A 260 N ASN A 250 SHEET 5 AC 5 ARG A 269 TYR A 271 -1 O ARG A 269 N TYR A 266 SHEET 1 AD 2 LEU A 314 PHE A 316 0 SHEET 2 AD 2 LEU B 314 PHE B 316 -1 O LEU B 314 N PHE A 316 SHEET 1 AE 7 PHE A 323 GLN A 326 0 SHEET 2 AE 7 ARG A 329 SER A 332 -1 O ARG A 329 N GLN A 326 SHEET 3 AE 7 TRP A 335 LEU A 341 -1 O TRP A 335 N SER A 332 SHEET 4 AE 7 PRO A 347 PHE A 354 -1 O ARG A 348 N GLY A 340 SHEET 5 AE 7 GLU A 357 TYR A 372 -1 O GLU A 357 N PHE A 354 SHEET 6 AE 7 HIS A 520 LEU A 530 -1 O THR A 521 N ILE A 371 SHEET 7 AE 7 PHE A 682 HIS A 684 -1 O PHE A 682 N HIS A 522 SHEET 1 AF 2 PHE A 323 GLN A 326 0 SHEET 2 AF 2 GLU A 357 TYR A 372 -1 O GLU A 357 N PHE A 354 SHEET 1 AG 5 THR A 409 PHE A 415 0 SHEET 2 AG 5 LYS A 423 ASN A 435 -1 O LYS A 423 N PHE A 415 SHEET 3 AG 5 THR A 458 LEU A 468 -1 O VAL A 459 N GLN A 434 SHEET 4 AG 5 VAL A 478 HIS A 480 1 O PHE A 479 N LEU A 460 SHEET 5 AG 5 ALA A 484 GLY A 493 1 O ALA A 484 N HIS A 480 SHEET 1 AH 2 THR A 409 PHE A 415 0 SHEET 2 AH 2 THR A 458 LEU A 468 -1 O VAL A 459 N GLN A 434 SHEET 1 AI 3 ARG A 441 SER A 445 0 SHEET 2 AI 3 TYR A 451 LEU A 455 -1 O TYR A 451 N SER A 445 SHEET 3 AI 3 ILE A 723 ARG A 726 -1 O ILE A 723 N GLY A 454 SHEET 1 AJ 3 ALA A 498 PHE A 499 0 SHEET 2 AJ 3 THR A 515 THR A 518 -1 N LEU A 516 O ALA A 498 SHEET 3 AJ 3 GLY A 508 SER A 512 -1 O ASN A 509 N GLY A 517 SHEET 1 AK 2 MET A 544 ALA A 550 0 SHEET 2 AK 2 GLN A 558 VAL A 564 -1 O LEU A 559 N MET A 549 SHEET 1 BA21 LEU B 83 VAL B 84 0 SHEET 2 BA21 ASN B 94 LEU B 101 -1 O ASN B 94 N VAL B 84 SHEET 3 BA21 TYR B 151 ASP B 154 0 SHEET 4 BA21 ASN B 137 LEU B 146 -1 O VAL B 142 N ARG B 153 SHEET 5 BA21 LEU B 164 PRO B 165 -1 O LEU B 164 N VAL B 138 SHEET 6 BA21 PHE B 323 GLN B 326 0 SHEET 7 BA21 ARG B 329 SER B 332 -1 O ARG B 329 N GLN B 326 SHEET 8 BA21 TRP B 335 GLY B 342 -1 O TRP B 335 N SER B 332 SHEET 9 BA21 GLY B 346 PHE B 354 -1 O GLY B 346 N GLY B 342 SHEET 10 BA21 GLU B 357 TYR B 372 -1 O GLU B 357 N PHE B 354 SHEET 11 BA21 ARG B 383 VAL B 385 1 O TYR B 384 N ALA B 370 SHEET 12 BA21 THR B 395 THR B 396 0 SHEET 13 BA21 TYR B 451 LEU B 468 1 O MET B 465 N THR B 396 SHEET 14 BA21 GLN B 558 THR B 565 0 SHEET 15 BA21 GLU B 536 ALA B 550 -1 O ASP B 543 N THR B 565 SHEET 16 BA21 LEU B 568 LEU B 569 -1 O LEU B 569 N VAL B 539 SHEET 17 BA21 ALA B 576 LEU B 578 0 SHEET 18 BA21 TYR B 630 GLN B 636 -1 N GLN B 631 O PHE B 577 SHEET 19 BA21 ALA B 670 HIS B 684 -1 O VAL B 675 N THR B 635 SHEET 20 BA21 ILE B 723 ARG B 726 0 SHEET 21 BA21 TYR B 451 LEU B 468 1 O PHE B 452 N PHE B 725 SHEET 1 BB 5 LEU B 208 MET B 211 0 SHEET 2 BB 5 ALA B 224 TYR B 231 -1 O GLY B 228 N MET B 211 SHEET 3 BB 5 HIS B 242 ASN B 250 -1 N VAL B 243 O LEU B 229 SHEET 4 BB 5 THR B 260 TYR B 266 -1 O THR B 260 N ASN B 250 SHEET 5 BB 5 ARG B 269 TYR B 271 -1 O ARG B 269 N TYR B 266 SHEET 1 BC 3 SER B 497 PHE B 499 0 SHEET 2 BC 3 THR B 515 THR B 518 -1 O LEU B 516 N ALA B 498 SHEET 3 BC 3 GLY B 508 SER B 512 -1 O ASN B 509 N GLY B 517 SSBOND 1 CYS A 198 CYS A 199 1555 1555 2.03 SSBOND 2 CYS A 404 CYS A 430 1555 1555 2.03 SSBOND 3 CYS A 734 CYS A 741 1555 1555 2.05 SSBOND 4 CYS A 748 CYS B 748 1555 1555 2.06 SSBOND 5 CYS B 198 CYS B 199 1555 1555 2.08 SSBOND 6 CYS B 404 CYS B 430 1555 1555 2.03 SSBOND 7 CYS B 734 CYS B 741 1555 1555 2.04 LINK ND2 ASN A 137 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 232 C1 NAG A1767 1555 1555 1.48 LINK ND2 ASN A 294 C1 NAG A1768 1555 1555 1.43 LINK C ASN A 470 N TPQ A 471 1555 1555 1.33 LINK C TPQ A 471 N ASP A 472 1555 1555 1.32 LINK ND2 ASN A 592 C1 NAG A1769 1555 1555 1.45 LINK ND2 ASN A 666 C1 NAG A1770 1555 1555 1.63 LINK ND2 ASN B 137 C1 NAG D 1 1555 1555 1.47 LINK ND2 ASN B 232 C1 NAG E 1 1555 1555 1.44 LINK C ASN B 470 N TPQ B 471 1555 1555 1.33 LINK C TPQ B 471 N ASP B 472 1555 1555 1.32 LINK ND2 ASN B 666 C1 NAG B1773 1555 1555 1.58 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.53 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.19 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK NE2 HIS A 520 CU CU A1762 1555 1555 2.05 LINK NE2 HIS A 522 CU CU A1762 1555 1555 2.14 LINK OD1 ASP A 529 CA CA A1763 1555 1555 2.38 LINK O LEU A 530 CA CA A1763 1555 1555 2.27 LINK OD1 ASP A 531 CA CA A1763 1555 1555 2.30 LINK OE1 GLU A 572 CA CA A1764 1555 1555 3.09 LINK OE2 GLU A 572 CA CA A1764 1555 1555 2.40 LINK O PHE A 663 CA CA A1764 1555 1555 2.30 LINK OD1 ASN A 665 CA CA A1764 1555 1555 2.45 LINK OE2 GLU A 667 CA CA A1764 1555 1555 2.26 LINK OD1 ASP A 673 CA CA A1763 1555 1555 2.29 LINK O LEU A 674 CA CA A1763 1555 1555 2.30 LINK ND1 HIS A 684 CU CU A1762 1555 1555 2.08 LINK NE2 HIS B 520 CU CU B1762 1555 1555 2.08 LINK NE2 HIS B 522 CU CU B1762 1555 1555 2.07 LINK OD1 ASP B 529 CA CA B1763 1555 1555 2.37 LINK O LEU B 530 CA CA B1763 1555 1555 2.29 LINK OD1 ASP B 531 CA CA B1763 1555 1555 2.34 LINK OE2 GLU B 572 CA CA B1764 1555 1555 2.37 LINK OE1 GLU B 572 CA CA B1764 1555 1555 3.11 LINK O PHE B 663 CA CA B1764 1555 1555 2.30 LINK OD1 ASN B 665 CA CA B1764 1555 1555 2.45 LINK OE1 GLU B 667 CA CA B1764 1555 1555 2.30 LINK OD1 ASP B 673 CA CA B1763 1555 1555 2.29 LINK O LEU B 674 CA CA B1763 1555 1555 2.30 LINK ND1 HIS B 684 CU CU B1762 1555 1555 2.09 CISPEP 1 GLY A 144 PRO A 145 0 2.67 CISPEP 2 LEU A 146 PRO A 147 0 3.99 CISPEP 3 ILE A 691 PRO A 692 0 2.73 CISPEP 4 GLY B 144 PRO B 145 0 -16.40 CISPEP 5 LEU B 146 PRO B 147 0 15.03 CISPEP 6 GLU B 556 HIS B 557 0 17.92 CISPEP 7 ILE B 691 PRO B 692 0 9.64 CRYST1 226.736 226.736 218.160 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004410 0.002546 0.000000 0.00000 SCALE2 0.000000 0.005093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004584 0.00000