HEADER HYDROLASE 24-JUN-13 4BV2 TITLE CRYSTAL STRUCTURE OF SIR2 IN COMPLEX WITH THE INHIBITOR EX-527, 2'-O- TITLE 2 ACETYL-ADP-RIBOSE AND DEACETYLATED P53-PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG, SIR2TM, NAD-DEPENDENT COMPND 5 PROTEIN DEACETYLASE SIR2; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 10 CHAIN: E, H; COMPND 11 FRAGMENT: RESIDUES 380-384; COMPND 12 SYNONYM: DEACETYLATED P53-PEPTIDE, ANTIGEN NY-CO-13, PHOSPHOPROTEIN COMPND 13 P53, TUMOR SUPPRESSOR P53, P53; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE, NAD-DEPENDENT DEACETYLASE, SIRTUIN, INHIBITOR COMPLEX, EX- KEYWDS 2 527, ACETYLATED ADP-RIBOSE, HYDROLASE-HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GERTZ,M.WEYAND,C.STEEGBORN REVDAT 3 20-DEC-23 4BV2 1 REMARK LINK REVDAT 2 07-AUG-13 4BV2 1 JRNL REVDAT 1 17-JUL-13 4BV2 0 JRNL AUTH M.GERTZ,F.FISCHER,G.T.T.NGUYEN,M.LAKSHMINARASIMHAN, JRNL AUTH 2 M.SCHUTKOWSKI,M.WEYAND,C.STEEGBORN JRNL TITL EX-527 INHIBITS SIRTUINS BY EXPLOITING THEIR UNIQUE JRNL TITL 2 NAD+-DEPENDENT DEACETYLATION MECHANISM JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E2772 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23840057 JRNL DOI 10.1073/PNAS.1303628110 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 7099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 500 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.787 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.846 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 108.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.845 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3937 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5331 ; 2.133 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 8.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;38.447 ;24.398 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;21.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.274 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 615 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2860 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 4.096 ; 6.058 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2354 ; 6.624 ; 9.077 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2044 ; 5.081 ; 6.266 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 245 3 REMARK 3 1 B 2 B 245 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 883 ; 0.06 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 883 ; 0.06 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 916 ; 6.69 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 916 ; 6.69 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 883 ; 8.74 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 883 ; 8.74 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 49.4323 63.8727 -6.4175 REMARK 3 T TENSOR REMARK 3 T11: 0.4540 T22: 0.2644 REMARK 3 T33: 0.3180 T12: 0.3159 REMARK 3 T13: -0.0208 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 6.0106 L22: 7.0523 REMARK 3 L33: 3.3790 L12: 3.3286 REMARK 3 L13: -0.0548 L23: 1.0191 REMARK 3 S TENSOR REMARK 3 S11: -0.4827 S12: -0.7262 S13: -0.0599 REMARK 3 S21: 0.6952 S22: 0.2604 S23: -0.2543 REMARK 3 S31: 0.2913 S32: 0.2574 S33: 0.2223 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 246 REMARK 3 ORIGIN FOR THE GROUP (A): 70.9163 72.8163 -34.1303 REMARK 3 T TENSOR REMARK 3 T11: 0.4023 T22: 0.4204 REMARK 3 T33: 0.3388 T12: -0.2396 REMARK 3 T13: -0.1000 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 6.4119 L22: 4.2577 REMARK 3 L33: 4.0026 L12: -2.8222 REMARK 3 L13: 0.1158 L23: 0.7293 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: 1.2076 S13: 0.4468 REMARK 3 S21: -0.1620 S22: -0.3182 S23: -0.0634 REMARK 3 S31: -0.2523 S32: -0.1124 S33: 0.3723 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1247 A 1247 REMARK 3 ORIGIN FOR THE GROUP (A): 71.0147 79.3658 -31.9064 REMARK 3 T TENSOR REMARK 3 T11: 0.7343 T22: 0.6239 REMARK 3 T33: 0.4512 T12: -0.0482 REMARK 3 T13: -0.2383 T23: -0.1474 REMARK 3 L TENSOR REMARK 3 L11: 207.4834 L22: 37.7495 REMARK 3 L33: 214.7545 L12: 70.9652 REMARK 3 L13:-182.5620 L23: -89.4486 REMARK 3 S TENSOR REMARK 3 S11: 5.2158 S12: -3.5021 S13: 1.1176 REMARK 3 S21: -0.3202 S22: -2.9883 S23: 1.0105 REMARK 3 S31: -0.3862 S32: 6.6769 S33: -2.2275 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1247 B 1247 REMARK 3 ORIGIN FOR THE GROUP (A): 49.3008 70.1896 -4.3862 REMARK 3 T TENSOR REMARK 3 T11: 0.6210 T22: 0.8328 REMARK 3 T33: 1.0828 T12: 0.2423 REMARK 3 T13: -0.2036 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 7.7032 L22: 112.4453 REMARK 3 L33: 300.1578 L12: 14.1807 REMARK 3 L13: 45.4850 L23: 31.5925 REMARK 3 S TENSOR REMARK 3 S11: 0.9175 S12: -0.9369 S13: -0.1188 REMARK 3 S21: -2.6385 S22: -1.1743 S23: -2.3457 REMARK 3 S31: 8.2178 S32: -5.8767 S33: 0.2569 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1248 A 1248 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4749 67.6870 -5.7857 REMARK 3 T TENSOR REMARK 3 T11: 2.0607 T22: 0.5067 REMARK 3 T33: 0.3179 T12: 0.3378 REMARK 3 T13: 0.0792 T23: 0.1705 REMARK 3 L TENSOR REMARK 3 L11: 5.0055 L22: 26.6386 REMARK 3 L33: 2.0590 L12: 4.5988 REMARK 3 L13: 3.1737 L23: 3.7678 REMARK 3 S TENSOR REMARK 3 S11: -2.7171 S12: -0.2101 S13: 0.5570 REMARK 3 S21: -3.5504 S22: 2.3141 S23: 0.1554 REMARK 3 S31: -1.6772 S32: 0.0180 S33: 0.4030 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1248 B 1248 REMARK 3 ORIGIN FOR THE GROUP (A): 78.4584 76.6872 -31.5204 REMARK 3 T TENSOR REMARK 3 T11: 0.3929 T22: 0.8221 REMARK 3 T33: 0.7887 T12: -0.0039 REMARK 3 T13: -0.3284 T23: 0.5143 REMARK 3 L TENSOR REMARK 3 L11: 0.8973 L22: 15.9795 REMARK 3 L33: 2.0791 L12: 3.6871 REMARK 3 L13: 1.3093 L23: 5.7386 REMARK 3 S TENSOR REMARK 3 S11: 0.0717 S12: 0.1664 S13: -0.0156 REMARK 3 S21: 0.8587 S22: 0.2972 S23: -0.6935 REMARK 3 S31: 0.3427 S32: 0.0629 S33: -0.3690 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES WITH TLS ADDED REMARK 4 REMARK 4 4BV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31261 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 60.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1YC5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.1 M BIS-TRIS PH5.9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.93500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 181.40250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.46750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 34 REMARK 465 GLY A 35 REMARK 465 PRO A 36 REMARK 465 ASN A 37 REMARK 465 GLY A 38 REMARK 465 ILE A 39 REMARK 465 TYR A 40 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 SER A 246 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ARG B 34 REMARK 465 GLY B 35 REMARK 465 PRO B 36 REMARK 465 ASN B 37 REMARK 465 GLY B 38 REMARK 465 ILE B 39 REMARK 465 TYR B 40 REMARK 465 LYS B 41 REMARK 465 LYS B 42 REMARK 465 TYR B 43 REMARK 465 SER B 44 REMARK 465 SER B 142 REMARK 465 SER B 143 REMARK 465 ASP B 144 REMARK 465 SER E -3 REMARK 465 THR E -2 REMARK 465 SER E -1 REMARK 465 ARG E 0 REMARK 465 PHE E 6 REMARK 465 LYS E 7 REMARK 465 THR E 8 REMARK 465 GLU E 9 REMARK 465 SER H -3 REMARK 465 THR H -2 REMARK 465 SER H -1 REMARK 465 ARG H 0 REMARK 465 PHE H 6 REMARK 465 LYS H 7 REMARK 465 THR H 8 REMARK 465 GLU H 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 ASP B 32 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C TYR B 194 CD PRO B 195 1.73 REMARK 500 O ASP B 51 OG SER B 55 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 59 O GLU A 87 1565 1.88 REMARK 500 OD1 ASN A 11 NE2 GLN A 45 1545 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 45 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 CYS A 124 CA - CB - SG ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 PRO A 195 C - N - CA ANGL. DEV. = 26.5 DEGREES REMARK 500 PRO A 195 C - N - CD ANGL. DEV. = -42.0 DEGREES REMARK 500 CYS B 124 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG B 156 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 156 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PRO B 195 C - N - CA ANGL. DEV. = 50.8 DEGREES REMARK 500 PRO B 195 C - N - CD ANGL. DEV. = -45.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -144.43 -108.11 REMARK 500 SER A 44 -20.98 93.18 REMARK 500 GLN A 45 -81.68 64.43 REMARK 500 PRO A 195 -72.88 50.82 REMARK 500 ASP B 32 -148.31 -110.36 REMARK 500 LYS E 3 130.11 -35.08 REMARK 500 LYS H 3 155.89 -41.93 REMARK 500 LEU H 4 167.99 155.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 194 PRO A 195 -103.54 REMARK 500 TYR B 194 PRO B 195 57.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1246 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 124 SG REMARK 620 2 CYS A 127 SG 107.7 REMARK 620 3 CYS A 148 SG 94.3 148.6 REMARK 620 4 CYS A 151 SG 52.7 129.1 50.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1249 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 124 SG REMARK 620 2 CYS B 127 SG 105.5 REMARK 620 3 CYS B 148 SG 93.8 149.7 REMARK 620 4 CYS B 151 SG 52.6 126.1 51.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCZ A 1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAD A 1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCZ B 1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAD B 1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1249 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BV3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SIRT3 IN COMPLEX WITH EX-527 AND NAD REMARK 900 RELATED ID: 4BVB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH EX- 527 AND ADP- REMARK 900 RIBOSE REMARK 900 RELATED ID: 4BVE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE REMARK 900 FORMED FROM THIO-ACETYL-LYSINE ACS2- PEPTIDE REMARK 900 RELATED ID: 4BVF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE REMARK 900 FORMED FROM THIO-ACETYL-LYSINE ACS2- PEPTIDE CRYSTALLIZED IN REMARK 900 PRESENCE OF THE INHIBITOR EX- 527 REMARK 900 RELATED ID: 4BVG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH NATIVE REMARK 900 ALKYLIMIDATE FORMED FROM ACETYL-LYSINE ACS2- PEPTIDE CRYSTALLIZED REMARK 900 IN PRESENCE OF THE INHIBITOR EX- 527 REMARK 900 RELATED ID: 4BUZ RELATED DB: PDB REMARK 900 SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION REMARK 900 PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD REMARK 900 RELATED ID: 4BVH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX- REMARK 900 527 AND 2'-O-ACETYL-ADP-RIBOSE DBREF 4BV2 A 1 246 UNP Q9WYW0 NPD_THEMA 1 246 DBREF 4BV2 B 1 246 UNP Q9WYW0 NPD_THEMA 1 246 DBREF 4BV2 E -3 9 UNP P04637 P53_HUMAN 376 388 DBREF 4BV2 H -3 9 UNP P04637 P53_HUMAN 376 388 SEQRES 1 A 246 MET LYS MET LYS GLU PHE LEU ASP LEU LEU ASN GLU SER SEQRES 2 A 246 ARG LEU THR VAL THR LEU THR GLY ALA GLY ILE SER THR SEQRES 3 A 246 PRO SER GLY ILE PRO ASP PHE ARG GLY PRO ASN GLY ILE SEQRES 4 A 246 TYR LYS LYS TYR SER GLN ASN VAL PHE ASP ILE ASP PHE SEQRES 5 A 246 PHE TYR SER HIS PRO GLU GLU PHE TYR ARG PHE ALA LYS SEQRES 6 A 246 GLU GLY ILE PHE PRO MET LEU GLN ALA LYS PRO ASN LEU SEQRES 7 A 246 ALA HIS VAL LEU LEU ALA LYS LEU GLU GLU LYS GLY LEU SEQRES 8 A 246 ILE GLU ALA VAL ILE THR GLN ASN ILE ASP ARG LEU HIS SEQRES 9 A 246 GLN ARG ALA GLY SER LYS LYS VAL ILE GLU LEU HIS GLY SEQRES 10 A 246 ASN VAL GLU GLU TYR TYR CYS VAL ARG CYS GLU LYS LYS SEQRES 11 A 246 TYR THR VAL GLU ASP VAL ILE LYS LYS LEU GLU SER SER SEQRES 12 A 246 ASP VAL PRO LEU CYS ASP ASP CYS ASN SER LEU ILE ARG SEQRES 13 A 246 PRO ASN ILE VAL PHE PHE GLY GLU ASN LEU PRO GLN ASP SEQRES 14 A 246 ALA LEU ARG GLU ALA ILE GLY LEU SER SER ARG ALA SER SEQRES 15 A 246 LEU MET ILE VAL LEU GLY SER SER LEU VAL VAL TYR PRO SEQRES 16 A 246 ALA ALA GLU LEU PRO LEU ILE THR VAL ARG SER GLY GLY SEQRES 17 A 246 LYS LEU VAL ILE VAL ASN LEU GLY GLU THR PRO PHE ASP SEQRES 18 A 246 ASP ILE ALA THR LEU LYS TYR ASN MET ASP VAL VAL GLU SEQRES 19 A 246 PHE ALA ARG ARG VAL MET GLU GLU GLY GLY ILE SER SEQRES 1 B 246 MET LYS MET LYS GLU PHE LEU ASP LEU LEU ASN GLU SER SEQRES 2 B 246 ARG LEU THR VAL THR LEU THR GLY ALA GLY ILE SER THR SEQRES 3 B 246 PRO SER GLY ILE PRO ASP PHE ARG GLY PRO ASN GLY ILE SEQRES 4 B 246 TYR LYS LYS TYR SER GLN ASN VAL PHE ASP ILE ASP PHE SEQRES 5 B 246 PHE TYR SER HIS PRO GLU GLU PHE TYR ARG PHE ALA LYS SEQRES 6 B 246 GLU GLY ILE PHE PRO MET LEU GLN ALA LYS PRO ASN LEU SEQRES 7 B 246 ALA HIS VAL LEU LEU ALA LYS LEU GLU GLU LYS GLY LEU SEQRES 8 B 246 ILE GLU ALA VAL ILE THR GLN ASN ILE ASP ARG LEU HIS SEQRES 9 B 246 GLN ARG ALA GLY SER LYS LYS VAL ILE GLU LEU HIS GLY SEQRES 10 B 246 ASN VAL GLU GLU TYR TYR CYS VAL ARG CYS GLU LYS LYS SEQRES 11 B 246 TYR THR VAL GLU ASP VAL ILE LYS LYS LEU GLU SER SER SEQRES 12 B 246 ASP VAL PRO LEU CYS ASP ASP CYS ASN SER LEU ILE ARG SEQRES 13 B 246 PRO ASN ILE VAL PHE PHE GLY GLU ASN LEU PRO GLN ASP SEQRES 14 B 246 ALA LEU ARG GLU ALA ILE GLY LEU SER SER ARG ALA SER SEQRES 15 B 246 LEU MET ILE VAL LEU GLY SER SER LEU VAL VAL TYR PRO SEQRES 16 B 246 ALA ALA GLU LEU PRO LEU ILE THR VAL ARG SER GLY GLY SEQRES 17 B 246 LYS LEU VAL ILE VAL ASN LEU GLY GLU THR PRO PHE ASP SEQRES 18 B 246 ASP ILE ALA THR LEU LYS TYR ASN MET ASP VAL VAL GLU SEQRES 19 B 246 PHE ALA ARG ARG VAL MET GLU GLU GLY GLY ILE SER SEQRES 1 E 13 SER THR SER ARG HIS LYS LYS LEU MET PHE LYS THR GLU SEQRES 1 H 13 SER THR SER ARG HIS LYS LYS LEU MET PHE LYS THR GLU HET ZN A1246 1 HET OCZ A1247 17 HET OAD A1248 39 HET OCZ B1247 17 HET OAD B1248 39 HET ZN B1249 1 HETNAM ZN ZINC ION HETNAM OCZ (1S)-6-CHLORO-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-1- HETNAM 2 OCZ CARBOXAMIDE HETNAM OAD 2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 5 ZN 2(ZN 2+) FORMUL 6 OCZ 2(C13 H13 CL N2 O) FORMUL 7 OAD 2(C17 H25 N5 O15 P2) HELIX 1 1 MET A 3 SER A 13 1 11 HELIX 2 2 ALA A 22 GLY A 29 5 8 HELIX 3 3 ASP A 49 HIS A 56 1 8 HELIX 4 4 HIS A 56 ILE A 68 1 13 HELIX 5 5 PHE A 69 ALA A 74 5 6 HELIX 6 6 ASN A 77 LYS A 89 1 13 HELIX 7 7 ARG A 102 ALA A 107 1 6 HELIX 8 8 VAL A 133 LEU A 140 1 8 HELIX 9 9 PRO A 167 ALA A 181 1 15 HELIX 10 10 PRO A 195 ALA A 197 5 3 HELIX 11 11 GLU A 198 GLY A 207 1 10 HELIX 12 12 PHE A 220 ALA A 224 5 5 HELIX 13 13 ASP A 231 GLY A 244 1 14 HELIX 14 14 MET B 3 SER B 13 1 11 HELIX 15 15 ALA B 22 GLY B 29 5 8 HELIX 16 16 ASP B 49 HIS B 56 1 8 HELIX 17 17 HIS B 56 ILE B 68 1 13 HELIX 18 18 PHE B 69 ALA B 74 5 6 HELIX 19 19 ASN B 77 LYS B 89 1 13 HELIX 20 20 ARG B 102 ALA B 107 1 6 HELIX 21 21 VAL B 133 LEU B 140 1 8 HELIX 22 22 PRO B 167 ALA B 181 1 15 HELIX 23 23 PRO B 195 ALA B 197 5 3 HELIX 24 24 GLU B 198 GLY B 207 1 10 HELIX 25 25 PHE B 220 ALA B 224 5 5 HELIX 26 26 ASP B 231 GLY B 244 1 14 SHEET 1 AA 6 VAL A 112 GLU A 114 0 SHEET 2 AA 6 ALA A 94 THR A 97 1 O VAL A 95 N ILE A 113 SHEET 3 AA 6 THR A 16 THR A 20 1 O THR A 18 N ILE A 96 SHEET 4 AA 6 LEU A 183 LEU A 187 1 O LEU A 183 N VAL A 17 SHEET 5 AA 6 LYS A 209 VAL A 213 1 O LYS A 209 N MET A 184 SHEET 6 AA 6 LEU A 226 TYR A 228 1 O LEU A 226 N ILE A 212 SHEET 1 AB 3 LYS A 130 THR A 132 0 SHEET 2 AB 3 GLY A 117 CYS A 124 -1 O TYR A 122 N TYR A 131 SHEET 3 AB 3 ILE A 155 ILE A 159 -1 O ARG A 156 N TYR A 123 SHEET 1 BA 6 VAL B 112 GLU B 114 0 SHEET 2 BA 6 ALA B 94 THR B 97 1 O VAL B 95 N ILE B 113 SHEET 3 BA 6 THR B 16 THR B 20 1 O THR B 18 N ILE B 96 SHEET 4 BA 6 LEU B 183 LEU B 187 1 O LEU B 183 N VAL B 17 SHEET 5 BA 6 LYS B 209 VAL B 213 1 O LYS B 209 N MET B 184 SHEET 6 BA 6 LEU B 226 TYR B 228 1 O LEU B 226 N ILE B 212 SHEET 1 BB 3 LYS B 130 THR B 132 0 SHEET 2 BB 3 GLY B 117 CYS B 124 -1 O TYR B 122 N TYR B 131 SHEET 3 BB 3 ILE B 155 ILE B 159 -1 O ARG B 156 N TYR B 123 SSBOND 1 CYS A 124 CYS A 151 1555 1555 2.06 SSBOND 2 CYS A 148 CYS A 151 1555 1555 2.00 SSBOND 3 CYS B 124 CYS B 151 1555 1555 2.07 SSBOND 4 CYS B 148 CYS B 151 1555 1555 2.01 LINK SG CYS A 124 ZN ZN A1246 1555 1555 2.31 LINK SG CYS A 127 ZN ZN A1246 1555 1555 2.33 LINK SG CYS A 148 ZN ZN A1246 1555 1555 2.35 LINK SG CYS A 151 ZN ZN A1246 1555 1555 2.33 LINK SG CYS B 124 ZN ZN B1249 1555 1555 2.33 LINK SG CYS B 127 ZN ZN B1249 1555 1555 2.34 LINK SG CYS B 148 ZN ZN B1249 1555 1555 2.34 LINK SG CYS B 151 ZN ZN B1249 1555 1555 2.33 SITE 1 AC1 5 CYS A 124 CYS A 127 LYS A 129 CYS A 148 SITE 2 AC1 5 CYS A 151 SITE 1 AC2 8 SER A 25 ILE A 30 PRO A 31 PHE A 33 SITE 2 AC2 8 ASN A 99 ILE A 100 ILE A 159 OAD A1248 SITE 1 AC3 21 GLY A 21 ALA A 22 GLY A 23 THR A 26 SITE 2 AC3 21 PRO A 27 ASP A 32 PHE A 33 GLN A 98 SITE 3 AC3 21 HIS A 116 PHE A 162 GLY A 188 SER A 189 SITE 4 AC3 21 SER A 190 VAL A 193 ASN A 214 LEU A 215 SITE 5 AC3 21 MET A 230 ASP A 231 VAL A 232 OCZ A1247 SITE 6 AC3 21 LYS E 3 SITE 1 AC4 11 SER B 25 ILE B 30 PRO B 31 PHE B 33 SITE 2 AC4 11 MET B 71 GLN B 98 ASN B 99 ILE B 100 SITE 3 AC4 11 ASP B 101 ILE B 159 OAD B1248 SITE 1 AC5 22 GLY B 21 ALA B 22 GLY B 23 THR B 26 SITE 2 AC5 22 PRO B 27 ASP B 32 PHE B 33 PHE B 48 SITE 3 AC5 22 GLN B 98 HIS B 116 VAL B 160 PHE B 162 SITE 4 AC5 22 SER B 189 SER B 190 VAL B 193 ASN B 214 SITE 5 AC5 22 LEU B 215 MET B 230 ASP B 231 VAL B 232 SITE 6 AC5 22 OCZ B1247 LYS H 3 SITE 1 AC6 5 CYS B 124 CYS B 127 LYS B 129 CYS B 148 SITE 2 AC6 5 CYS B 151 CRYST1 45.950 45.950 241.870 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004134 0.00000 MTRIX1 1 -0.999000 -0.033200 0.031000 122.60000 1 MTRIX2 1 -0.006934 0.785900 0.618300 27.25000 1 MTRIX3 1 -0.044900 0.617400 -0.785300 -76.24000 1 MTRIX1 2 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 2 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 2 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 3 -0.998967 -0.006905 -0.044920 119.23440 1 MTRIX2 3 -0.033196 0.785921 0.617436 29.72567 1 MTRIX3 3 0.031040 0.618289 -0.785338 -80.52349 1