HEADER IMMUNE SYSTEM 24-JUN-13 4BV4 TITLE STRUCTURE AND ALLOSTERY IN TOLL-SPATZLE RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SPAETZLE C-106; COMPND 3 CHAIN: L, M; COMPND 4 SYNONYM: PROTEIN SPAETZLE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN TOLL, VARIABLE LYMPHOCYTE RECEPTOR B CHIMERA; COMPND 8 CHAIN: R; COMPND 9 FRAGMENT: PROTEIN TOLL, RESIDUES 28-397, VARIABLE LYMPHOCYTE RECEPTOR COMPND 10 B, RESIDUES 133-201; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CHIMERIC PROTEIN, GLYCAN BOUND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-1; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER, EPTATRETUS BURGERI; SOURCE 12 ORGANISM_COMMON: FRUIT FLY, INSHORE HAGFISH; SOURCE 13 ORGANISM_TAXID: 7227, 7764; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-1 KEYWDS CYTOKINE RECOGNITION, EMBRYONIC DEVELOPMENT, IMMUNE SYSTEM, INNATE KEYWDS 2 IMMUNITY, LEUCINE-RICH REPEATS, CYSTINE-KNOT, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.LEWIS,C.J.ARNOT,H.BEESTON,A.MCCOY,A.E.ASHCROFT,N.J.GAY,M.GANGLOFF REVDAT 6 20-DEC-23 4BV4 1 HETSYN REVDAT 5 29-JUL-20 4BV4 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 15-MAR-17 4BV4 1 SOURCE REVDAT 3 08-JAN-14 4BV4 1 JRNL REVDAT 2 11-DEC-13 4BV4 1 JRNL REVDAT 1 04-DEC-13 4BV4 0 JRNL AUTH M.LEWIS,C.J.ARNOT,H.BEESTON,A.MCCOY,A.E.ASHCROFT,N.J.GAY, JRNL AUTH 2 M.GANGLOFF JRNL TITL CYTOKINE SPATZLE BINDS TO THE DROSOPHILA IMMUNORECEPTOR TOLL JRNL TITL 2 WITH A NEUROTROPHIN-LIKE SPECIFICITY AND COUPLES RECEPTOR JRNL TITL 3 ACTIVATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 20461 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 24282309 JRNL DOI 10.1073/PNAS.1317002110 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.7 REMARK 3 NUMBER OF REFLECTIONS : 24588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.74 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 938 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2159 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 885 REMARK 3 BIN R VALUE (WORKING SET) : 0.2122 REMARK 3 BIN FREE R VALUE : 0.2735 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.65 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 150 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.34530 REMARK 3 B22 (A**2) : 12.29520 REMARK 3 B33 (A**2) : -5.94990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33040 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.343 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.465 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.254 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.482 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.260 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4840 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6576 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2305 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 130 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 678 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4840 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 683 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5133 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.13 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.33 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN L REMARK 3 ORIGIN FOR THE GROUP (A): 400.3477 -6.8524 117.5984 REMARK 3 T TENSOR REMARK 3 T11: -0.2186 T22: 0.2390 REMARK 3 T33: -0.1616 T12: -0.0690 REMARK 3 T13: 0.0023 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 2.1204 L22: 1.4244 REMARK 3 L33: 3.6694 L12: -0.9804 REMARK 3 L13: -2.4379 L23: 1.5945 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.2478 S13: 0.1726 REMARK 3 S21: 0.1074 S22: -0.0400 S23: 0.1217 REMARK 3 S31: -0.0465 S32: -0.0018 S33: 0.0298 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN M REMARK 3 ORIGIN FOR THE GROUP (A): 410.9011 -3.1092 117.0293 REMARK 3 T TENSOR REMARK 3 T11: -0.2603 T22: 0.1725 REMARK 3 T33: -0.1090 T12: -0.1111 REMARK 3 T13: -0.0241 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 2.3158 L22: 4.8708 REMARK 3 L33: 4.6763 L12: -0.4951 REMARK 3 L13: 0.0580 L23: 2.7977 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.1225 S13: 0.3149 REMARK 3 S21: -0.0148 S22: 0.0433 S23: 0.0016 REMARK 3 S31: -0.0992 S32: 0.0192 S33: -0.0513 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN R REMARK 3 ORIGIN FOR THE GROUP (A): 410.6345 -19.2876 104.1815 REMARK 3 T TENSOR REMARK 3 T11: -0.2718 T22: -0.0530 REMARK 3 T33: -0.2971 T12: -0.0444 REMARK 3 T13: 0.0273 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.7177 L22: 0.6657 REMARK 3 L33: 1.7993 L12: -0.7093 REMARK 3 L13: 0.5863 L23: -0.1828 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: -0.3010 S13: -0.2474 REMARK 3 S21: 0.1140 S22: 0.0820 S23: 0.0200 REMARK 3 S31: 0.1647 S32: 0.1882 S33: -0.0247 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4BV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, ANISOSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24588 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 49.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 32.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ARN, 3E07 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 8000, 0.1M TRIS PH 7.5, 0.1 M REMARK 280 MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 99.15500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 99.15500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 32.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, M, R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 0 REMARK 465 VAL L 1 REMARK 465 GLY L 2 REMARK 465 GLY L 3 REMARK 465 SER L 4 REMARK 465 ASP L 5 REMARK 465 GLU L 6 REMARK 465 LYS L 21 REMARK 465 GLY L 22 REMARK 465 LEU L 23 REMARK 465 ARG L 24 REMARK 465 ALA L 25 REMARK 465 ASP L 26 REMARK 465 ASP L 27 REMARK 465 THR L 28 REMARK 465 TRP L 29 REMARK 465 GLN L 30 REMARK 465 LEU L 31 REMARK 465 ILE L 32 REMARK 465 VAL L 33 REMARK 465 ASN L 34 REMARK 465 ASN L 35 REMARK 465 ASP L 36 REMARK 465 GLU L 37 REMARK 465 TYR L 38 REMARK 465 LYS L 39 REMARK 465 LEU L 77 REMARK 465 ALA L 78 REMARK 465 SER L 79 REMARK 465 ILE L 80 REMARK 465 LYS L 81 REMARK 465 SER L 82 REMARK 465 ASP L 83 REMARK 465 GLY L 84 REMARK 465 GLU L 85 REMARK 465 LEU L 86 REMARK 465 ASP L 87 REMARK 465 VAL L 88 REMARK 465 VAL L 89 REMARK 465 GLN L 90 REMARK 465 GLY L 106 REMARK 465 PRO M 19 REMARK 465 LYS M 20 REMARK 465 LYS M 21 REMARK 465 GLY M 22 REMARK 465 LEU M 23 REMARK 465 ARG M 24 REMARK 465 ALA M 25 REMARK 465 ASP M 26 REMARK 465 ASP M 27 REMARK 465 THR M 28 REMARK 465 TRP M 29 REMARK 465 GLN M 30 REMARK 465 LEU M 31 REMARK 465 ILE M 32 REMARK 465 VAL M 33 REMARK 465 ASN M 34 REMARK 465 ASN M 35 REMARK 465 ASP M 36 REMARK 465 GLU M 37 REMARK 465 TYR M 38 REMARK 465 LYS M 39 REMARK 465 GLN M 40 REMARK 465 LEU M 77 REMARK 465 ALA M 78 REMARK 465 SER M 79 REMARK 465 ILE M 80 REMARK 465 LYS M 81 REMARK 465 SER M 82 REMARK 465 ASP M 83 REMARK 465 GLY M 84 REMARK 465 GLU M 85 REMARK 465 LEU M 86 REMARK 465 ASP M 87 REMARK 465 VAL M 88 REMARK 465 VAL M 89 REMARK 465 GLN M 90 REMARK 465 ASN M 91 REMARK 465 SER M 92 REMARK 465 GLY M 106 REMARK 465 THR R 468 REMARK 465 GLY R 469 REMARK 465 GLU R 470 REMARK 465 ASN R 471 REMARK 465 LEU R 472 REMARK 465 TYR R 473 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU M 48 69.47 -69.87 REMARK 500 ASN M 59 54.06 -116.47 REMARK 500 MET R 37 -118.08 -84.48 REMARK 500 SER R 38 -91.59 50.24 REMARK 500 MET R 49 -120.21 58.70 REMARK 500 ASN R 59 90.64 61.37 REMARK 500 ASN R 62 46.49 -144.32 REMARK 500 LYS R 72 -20.68 71.43 REMARK 500 ASP R 73 -73.76 -98.15 REMARK 500 LYS R 93 -106.98 65.14 REMARK 500 LEU R 94 123.79 57.37 REMARK 500 HIS R 112 54.41 -105.44 REMARK 500 ARG R 148 -41.66 73.60 REMARK 500 LEU R 149 48.63 -85.86 REMARK 500 ALA R 183 38.28 -143.15 REMARK 500 LEU R 196 42.39 -104.38 REMARK 500 ASN R 231 -160.16 -113.50 REMARK 500 ASN R 235 72.53 -117.07 REMARK 500 ALA R 244 41.06 -88.86 REMARK 500 ASN R 279 -169.38 -108.51 REMARK 500 HIS R 291 -16.85 79.88 REMARK 500 ASN R 292 63.47 -102.60 REMARK 500 ASN R 352 -156.61 -108.30 REMARK 500 CYS R 428 51.05 -92.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 4BV4 L 1 106 UNP P48607 SPZ_DROME 221 326 DBREF 4BV4 M 1 106 UNP P48607 SPZ_DROME 221 326 DBREF 4BV4 R 28 397 UNP P08953 TOLL_DROME 28 397 DBREF 4BV4 R 400 468 UNP Q4G1L2 Q4G1L2_EPTBU 133 201 SEQADV 4BV4 GLY L 0 UNP P48607 EXPRESSION TAG SEQADV 4BV4 GLY M 0 UNP P48607 EXPRESSION TAG SEQADV 4BV4 ALA R 398 UNP P08953 LINKER SEQADV 4BV4 SER R 399 UNP P08953 LINKER SEQADV 4BV4 GLY R 469 UNP Q4G1L2 EXPRESSION TAG SEQADV 4BV4 GLU R 470 UNP Q4G1L2 EXPRESSION TAG SEQADV 4BV4 ASN R 471 UNP Q4G1L2 EXPRESSION TAG SEQADV 4BV4 LEU R 472 UNP Q4G1L2 EXPRESSION TAG SEQADV 4BV4 TYR R 473 UNP Q4G1L2 EXPRESSION TAG SEQRES 1 L 107 GLY VAL GLY GLY SER ASP GLU ARG PHE LEU CYS ARG SER SEQRES 2 L 107 ILE ARG LYS LEU VAL TYR PRO LYS LYS GLY LEU ARG ALA SEQRES 3 L 107 ASP ASP THR TRP GLN LEU ILE VAL ASN ASN ASP GLU TYR SEQRES 4 L 107 LYS GLN ALA ILE GLN ILE GLU GLU CYS GLU GLY ALA ASP SEQRES 5 L 107 GLN PRO CYS ASP PHE ALA ALA ASN PHE PRO GLN SER TYR SEQRES 6 L 107 ASN PRO ILE CYS LYS GLN HIS TYR THR GLN GLN THR LEU SEQRES 7 L 107 ALA SER ILE LYS SER ASP GLY GLU LEU ASP VAL VAL GLN SEQRES 8 L 107 ASN SER PHE LYS ILE PRO SER CYS CYS LYS CYS ALA LEU SEQRES 9 L 107 LYS THR GLY SEQRES 1 M 107 GLY VAL GLY GLY SER ASP GLU ARG PHE LEU CYS ARG SER SEQRES 2 M 107 ILE ARG LYS LEU VAL TYR PRO LYS LYS GLY LEU ARG ALA SEQRES 3 M 107 ASP ASP THR TRP GLN LEU ILE VAL ASN ASN ASP GLU TYR SEQRES 4 M 107 LYS GLN ALA ILE GLN ILE GLU GLU CYS GLU GLY ALA ASP SEQRES 5 M 107 GLN PRO CYS ASP PHE ALA ALA ASN PHE PRO GLN SER TYR SEQRES 6 M 107 ASN PRO ILE CYS LYS GLN HIS TYR THR GLN GLN THR LEU SEQRES 7 M 107 ALA SER ILE LYS SER ASP GLY GLU LEU ASP VAL VAL GLN SEQRES 8 M 107 ASN SER PHE LYS ILE PRO SER CYS CYS LYS CYS ALA LEU SEQRES 9 M 107 LYS THR GLY SEQRES 1 R 446 SER PHE GLY ARG ASP ALA CYS SER GLU MET SER ILE ASP SEQRES 2 R 446 GLY LEU CYS GLN CYS ALA PRO ILE MET SER GLU TYR GLU SEQRES 3 R 446 ILE ILE CYS PRO ALA ASN ALA GLU ASN PRO THR PHE ARG SEQRES 4 R 446 LEU THR ILE GLN PRO LYS ASP TYR VAL GLN ILE MET CYS SEQRES 5 R 446 ASN LEU THR ASP THR THR ASP TYR GLN GLN LEU PRO LYS SEQRES 6 R 446 LYS LEU ARG ILE GLY GLU VAL ASP ARG VAL GLN MET ARG SEQRES 7 R 446 ARG CYS MET LEU PRO GLY HIS THR PRO ILE ALA SER ILE SEQRES 8 R 446 LEU ASP TYR LEU GLY ILE VAL SER PRO THR THR LEU ILE SEQRES 9 R 446 PHE GLU SER ASP ASN LEU GLY MET ASN ILE THR ARG GLN SEQRES 10 R 446 HIS LEU ASP ARG LEU HIS GLY LEU LYS ARG PHE ARG PHE SEQRES 11 R 446 THR THR ARG ARG LEU THR HIS ILE PRO ALA ASN LEU LEU SEQRES 12 R 446 THR ASP MET ARG ASN LEU SER HIS LEU GLU LEU ARG ALA SEQRES 13 R 446 ASN ILE GLU GLU MET PRO SER HIS LEU PHE ASP ASP LEU SEQRES 14 R 446 GLU ASN LEU GLU SER ILE GLU PHE GLY SER ASN LYS LEU SEQRES 15 R 446 ARG GLN MET PRO ARG GLY ILE PHE GLY LYS MET PRO LYS SEQRES 16 R 446 LEU LYS GLN LEU ASN LEU TRP SER ASN GLN LEU HIS ASN SEQRES 17 R 446 LEU THR LYS HIS ASP PHE GLU GLY ALA THR SER VAL LEU SEQRES 18 R 446 GLY ILE ASP ILE HIS ASP ASN GLY ILE GLU GLN LEU PRO SEQRES 19 R 446 HIS ASP VAL PHE ALA HIS LEU THR ASN VAL THR ASP ILE SEQRES 20 R 446 ASN LEU SER ALA ASN LEU PHE ARG SER LEU PRO GLN GLY SEQRES 21 R 446 LEU PHE ASP HIS ASN LYS HIS LEU ASN GLU VAL ARG LEU SEQRES 22 R 446 MET ASN ASN ARG VAL PRO LEU ALA THR LEU PRO SER ARG SEQRES 23 R 446 LEU PHE ALA ASN GLN PRO GLU LEU GLN ILE LEU ARG LEU SEQRES 24 R 446 ARG ALA GLU LEU GLN SER LEU PRO GLY ASP LEU PHE GLU SEQRES 25 R 446 HIS SER THR GLN ILE THR ASN ILE SER LEU GLY ASP ASN SEQRES 26 R 446 LEU LEU LYS THR LEU PRO ALA THR LEU LEU GLU HIS GLN SEQRES 27 R 446 VAL ASN LEU LEU SER LEU ASP LEU SER ASN ASN ARG LEU SEQRES 28 R 446 THR HIS LEU PRO ASP SER LEU PHE ALA HIS THR THR ASN SEQRES 29 R 446 LEU THR ASP LEU ARG LEU ALA SER ASN GLN LEU LYS SER SEQRES 30 R 446 VAL PRO ASP GLY ILE PHE ASP ARG LEU THR SER LEU GLN SEQRES 31 R 446 LYS ILE TRP LEU HIS THR ASN PRO TRP ASP CYS SER CYS SEQRES 32 R 446 PRO ARG ILE ASP TYR LEU SER ARG TRP LEU ASN LYS ASN SEQRES 33 R 446 SER GLN LYS GLU GLN GLY SER ALA LYS CYS SER GLY SER SEQRES 34 R 446 GLY LYS PRO VAL ARG SER ILE ILE CYS PRO THR THR GLY SEQRES 35 R 446 GLU ASN LEU TYR MODRES 4BV4 ASN R 80 ASN GLYCOSYLATION SITE MODRES 4BV4 ASN R 140 ASN GLYCOSYLATION SITE MODRES 4BV4 ASN R 270 ASN GLYCOSYLATION SITE MODRES 4BV4 ASN R 346 ASN GLYCOSYLATION SITE MODRES 4BV4 ASN R 391 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET BMA A 6 11 HET MAN A 7 11 HET BMA A 8 11 HET NAG R 501 14 HET NAG R 601 14 HET NAG R 901 14 HET NAG R1201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 6(C8 H15 N O6) FORMUL 4 BMA 3(C6 H12 O6) FORMUL 4 MAN 3(C6 H12 O6) FORMUL 9 HOH *104(H2 O) HELIX 1 1 PHE L 56 PHE L 60 5 5 HELIX 2 2 GLY R 30 GLU R 36 1 7 HELIX 3 3 MET R 37 GLY R 41 5 5 HELIX 4 4 ASP R 83 LEU R 90 5 8 HELIX 5 5 ILE R 115 LEU R 122 1 8 HELIX 6 6 THR R 142 ASP R 147 5 6 HELIX 7 7 PRO R 189 ASP R 194 5 6 HELIX 8 8 GLY R 215 MET R 220 5 6 HELIX 9 9 THR R 237 GLU R 242 5 6 HELIX 10 10 ILE R 433 ASN R 443 1 11 HELIX 11 11 VAL R 460 ILE R 463 5 4 SHEET 1 LA 4 SER L 12 VAL L 17 0 SHEET 2 LA 4 ILE L 42 CYS L 47 -1 O ILE L 42 N VAL L 17 SHEET 3 LA 4 ASN M 65 GLN M 75 -1 O GLN M 74 N GLN L 43 SHEET 4 LA 4 LYS M 94 LYS M 104 -1 O ILE M 95 N THR M 73 SHEET 1 LB 3 ASN L 65 GLN L 75 0 SHEET 2 LB 3 PHE L 93 LYS L 104 -1 O PHE L 93 N GLN L 75 SHEET 3 LB 3 GLU M 6 PHE M 8 -1 O ARG M 7 N LEU L 103 SHEET 1 MA 2 SER M 12 VAL M 17 0 SHEET 2 MA 2 ILE M 42 CYS M 47 -1 O ILE M 42 N VAL M 17 SHEET 1 RA19 GLN R 44 ILE R 48 0 SHEET 2 RA19 GLU R 51 CYS R 56 -1 O GLU R 51 N ILE R 48 SHEET 3 RA19 PHE R 65 GLN R 70 -1 O PHE R 65 N CYS R 56 SHEET 4 RA19 TYR R 74 CYS R 79 -1 O TYR R 74 N GLN R 70 SHEET 5 RA19 ARG R 101 ARG R 105 1 O ARG R 101 N VAL R 75 SHEET 6 RA19 THR R 129 GLU R 133 1 O THR R 129 N VAL R 102 SHEET 7 RA19 ARG R 154 THR R 158 1 O ARG R 154 N LEU R 130 SHEET 8 RA19 HIS R 178 ARG R 182 1 O HIS R 178 N PHE R 155 SHEET 9 RA19 SER R 201 GLU R 203 1 O SER R 201 N LEU R 179 SHEET 10 RA19 GLN R 225 ASN R 227 1 O GLN R 225 N ILE R 202 SHEET 11 RA19 GLY R 249 ASP R 251 1 O GLY R 249 N LEU R 226 SHEET 12 RA19 ASP R 273 ASN R 275 1 O ASP R 273 N ILE R 250 SHEET 13 RA19 GLU R 297 LEU R 300 1 O GLU R 297 N ILE R 274 SHEET 14 RA19 ILE R 323 LEU R 326 1 O ILE R 323 N VAL R 298 SHEET 15 RA19 ASN R 346 SER R 348 1 O ASN R 346 N LEU R 324 SHEET 16 RA19 SER R 370 ASP R 372 1 O SER R 370 N ILE R 347 SHEET 17 RA19 ASP R 394 ARG R 396 1 O ASP R 394 N LEU R 371 SHEET 18 RA19 LYS R 418 TRP R 420 1 O LYS R 418 N LEU R 395 SHEET 19 RA19 GLU R 447 GLN R 448 1 N GLN R 448 O ILE R 419 SHEET 1 RB 2 GLY R 97 GLU R 98 0 SHEET 2 RB 2 ILE R 124 VAL R 125 1 N VAL R 125 O GLY R 97 SSBOND 1 CYS L 10 CYS L 68 1555 1555 2.05 SSBOND 2 CYS L 47 CYS L 99 1555 1555 2.04 SSBOND 3 CYS L 54 CYS L 101 1555 1555 2.04 SSBOND 4 CYS L 98 CYS M 98 1555 1555 2.03 SSBOND 5 CYS M 10 CYS M 68 1555 1555 2.04 SSBOND 6 CYS M 47 CYS M 99 1555 1555 2.05 SSBOND 7 CYS M 54 CYS M 101 1555 1555 2.05 SSBOND 8 CYS R 43 CYS R 56 1555 1555 2.04 SSBOND 9 CYS R 79 CYS R 107 1555 1555 2.04 SSBOND 10 CYS R 428 CYS R 453 1555 1555 2.04 SSBOND 11 CYS R 430 CYS R 465 1555 1555 2.04 LINK ND2 ASN R 80 C1 NAG R 501 1555 1555 1.43 LINK ND2 ASN R 140 C1 NAG R 601 1555 1555 1.44 LINK ND2 ASN R 270 C1 NAG R 901 1555 1555 1.43 LINK ND2 ASN R 346 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN R 391 C1 NAG R1201 1555 1555 1.43 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.41 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.42 LINK O3 BMA A 3 C1 MAN A 4 1555 1555 1.43 LINK O6 BMA A 3 C1 BMA A 6 1555 1555 1.38 LINK O2 MAN A 4 C1 MAN A 5 1555 1555 1.44 LINK O3 BMA A 6 C1 MAN A 7 1555 1555 1.43 LINK O6 BMA A 6 C1 BMA A 8 1555 1555 1.40 CISPEP 1 ALA M 50 ASP M 51 0 0.58 CISPEP 2 CYS R 56 PRO R 57 0 -1.46 CISPEP 3 ARG R 327 ALA R 328 0 8.81 CISPEP 4 CYS R 430 PRO R 431 0 9.03 CRYST1 198.310 57.110 70.500 90.00 97.76 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005043 0.000000 0.000687 0.00000 SCALE2 0.000000 0.017510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014315 0.00000