HEADER HYDROLASE 26-JUN-13 4BVJ TITLE STRUCTURE OF Y105A MUTANT OF PHAZ7 PHB DEPOLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHB DEPOLYMERASE PHAZ7; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 39-380; COMPND 5 EC: 3.1.1.75; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAUCIMONAS LEMOIGNEI; SOURCE 3 ORGANISM_TAXID: 29443; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: WB800 KEYWDS HYDROLASE, CATALYTIC TRIAD, BIOPOLYMER BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU,D.JENDROSSEK REVDAT 6 20-DEC-23 4BVJ 1 REMARK LINK REVDAT 5 17-JUL-19 4BVJ 1 REMARK REVDAT 4 10-JUL-19 4BVJ 1 REMARK REVDAT 3 30-JAN-19 4BVJ 1 REMARK REVDAT 2 25-DEC-13 4BVJ 1 JRNL REVDAT 1 18-SEP-13 4BVJ 0 JRNL AUTH D.JENDROSSEK,S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU JRNL TITL BIOCHEMICAL ANALYSIS AND STRUCTURE DETERMINATION OF JRNL TITL 2 PAUCIMONAS LEMOIGNEI POLY(3-HYDROXYBUTYRATE) (PHB) JRNL TITL 3 DEPOLYMERASE PHAZ7 MUTEINS REVEAL THE PHB BINDING SITE AND JRNL TITL 4 DETAILS OF SUBSTRATE-ENZYME INTERACTIONS. JRNL REF MOL.MICROBIOL. V. 90 649 2013 JRNL REFN ISSN 0950-382X JRNL PMID 24007310 JRNL DOI 10.1111/MMI.12391 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.C.PAPAGEORGIOU,S.HERMAWAN,C.B.SINGH,D.JENDROSSEK REMARK 1 TITL STRUCTURAL BASIS OF POLY(3-HYDROXYBUTYRATE) HYDROLYSIS BY REMARK 1 TITL 2 PHAZ7 DEPOLYMERASE FROM PAUCIMONAS LEMOIGNEI. REMARK 1 REF J.MOL.BIOL. V. 382 1184 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 18706425 REMARK 1 DOI 10.1016/J.JMB.2008.07.078 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 84894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.0066 - 4.9444 0.98 2688 142 0.1487 0.1718 REMARK 3 2 4.9444 - 3.9343 0.99 2692 142 0.1191 0.1364 REMARK 3 3 3.9343 - 3.4398 0.98 2670 140 0.1213 0.1475 REMARK 3 4 3.4398 - 3.1266 0.99 2697 142 0.1341 0.1736 REMARK 3 5 3.1266 - 2.9032 0.99 2700 142 0.1434 0.1751 REMARK 3 6 2.9032 - 2.7325 0.99 2685 142 0.1448 0.1596 REMARK 3 7 2.7325 - 2.5959 0.99 2689 141 0.1478 0.1605 REMARK 3 8 2.5959 - 2.4832 0.99 2743 145 0.1480 0.1956 REMARK 3 9 2.4832 - 2.3877 0.99 2723 143 0.1483 0.1839 REMARK 3 10 2.3877 - 2.3055 0.99 2633 138 0.1464 0.1778 REMARK 3 11 2.3055 - 2.2335 0.99 2739 145 0.1454 0.1875 REMARK 3 12 2.2335 - 2.1697 1.00 2696 141 0.1395 0.1603 REMARK 3 13 2.1697 - 2.1126 1.00 2671 141 0.1447 0.1879 REMARK 3 14 2.1126 - 2.0612 0.99 2739 144 0.1551 0.1867 REMARK 3 15 2.0612 - 2.0143 1.00 2687 142 0.1578 0.2155 REMARK 3 16 2.0143 - 1.9715 1.00 2724 143 0.1579 0.2101 REMARK 3 17 1.9715 - 1.9321 0.99 2676 141 0.1603 0.2058 REMARK 3 18 1.9321 - 1.8957 0.99 2726 143 0.1690 0.2294 REMARK 3 19 1.8957 - 1.8618 0.99 2677 141 0.1755 0.2302 REMARK 3 20 1.8618 - 1.8303 1.00 2734 144 0.1801 0.1965 REMARK 3 21 1.8303 - 1.8008 0.99 2664 140 0.1925 0.2273 REMARK 3 22 1.8008 - 1.7731 0.99 2697 142 0.1981 0.2474 REMARK 3 23 1.7731 - 1.7471 0.99 2721 143 0.1946 0.2322 REMARK 3 24 1.7471 - 1.7225 0.99 2625 139 0.2014 0.2333 REMARK 3 25 1.7225 - 1.6992 0.99 2727 143 0.2023 0.2410 REMARK 3 26 1.6992 - 1.6771 0.99 2710 143 0.2161 0.2594 REMARK 3 27 1.6771 - 1.6562 0.99 2632 138 0.2161 0.2501 REMARK 3 28 1.6562 - 1.6362 0.99 2720 143 0.2303 0.2681 REMARK 3 29 1.6362 - 1.6172 0.99 2711 143 0.2518 0.2930 REMARK 3 30 1.6172 - 1.5991 0.92 2453 129 0.2581 0.3142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5251 REMARK 3 ANGLE : 1.082 7136 REMARK 3 CHIRALITY : 0.074 755 REMARK 3 PLANARITY : 0.005 929 REMARK 3 DIHEDRAL : 12.491 1774 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290057421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BRS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION HANGING DROP, PROTEIN REMARK 280 CONCENTRATION 10 MG/ML, 0.1 M NAOAC (PH 5.0), 0.2 M NH4CL, 20% W/ REMARK 280 V PEG6000, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 100.02500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 293 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 294 CG OD1 ND2 REMARK 470 TYR B 293 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 294 CG OD1 ND2 REMARK 470 ASN B 343 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2149 O HOH A 2295 1.27 REMARK 500 O HOH A 2233 O HOH A 2237 1.73 REMARK 500 O HOH B 2047 O HOH B 2048 1.84 REMARK 500 O HOH B 2443 O HOH B 2444 1.84 REMARK 500 O HOH B 2010 O HOH B 2037 1.84 REMARK 500 O HOH B 2221 O HOH B 2223 1.85 REMARK 500 O HOH B 2227 O HOH B 2435 1.88 REMARK 500 O HOH B 2143 O HOH B 2370 1.90 REMARK 500 O HOH B 2176 O HOH B 2177 1.90 REMARK 500 O HOH B 2063 O HOH B 2127 1.90 REMARK 500 O HOH A 2246 O HOH A 2378 1.92 REMARK 500 O HOH A 2111 O HOH A 2112 1.92 REMARK 500 O HOH A 2560 O HOH A 2561 1.93 REMARK 500 O HOH A 2075 O HOH A 2148 1.93 REMARK 500 O HOH A 2173 O HOH A 2368 1.94 REMARK 500 O HOH B 2033 O HOH B 2117 1.94 REMARK 500 O HOH B 2198 O HOH B 2199 1.94 REMARK 500 O HOH B 2135 O HOH B 2136 1.95 REMARK 500 O HOH A 2302 O HOH A 2305 1.95 REMARK 500 O HOH B 2354 O HOH B 2601 1.95 REMARK 500 O HOH A 2571 O HOH A 2572 1.96 REMARK 500 O HOH A 2062 O HOH A 2179 1.97 REMARK 500 O HOH A 2150 O HOH A 2151 1.97 REMARK 500 O HOH A 2291 O HOH A 2538 1.98 REMARK 500 O HOH A 2081 O HOH A 2156 1.98 REMARK 500 O HOH B 2218 O HOH B 2219 1.98 REMARK 500 O HOH B 2117 O HOH B 2118 1.98 REMARK 500 NZ LYS A 40 O HOH A 2158 1.99 REMARK 500 O HOH A 2597 O HOH A 2598 2.00 REMARK 500 O HOH B 2597 O HOH B 2599 2.00 REMARK 500 O HOH B 2320 O HOH B 2322 2.01 REMARK 500 O HOH B 2405 O HOH B 2495 2.01 REMARK 500 OD1 ASN A 150 O HOH A 2383 2.01 REMARK 500 O HOH A 2273 O HOH A 2274 2.01 REMARK 500 O HOH B 2067 O HOH B 2134 2.01 REMARK 500 O HOH B 2173 O HOH B 2382 2.02 REMARK 500 O HOH B 2400 O HOH B 2402 2.02 REMARK 500 O HOH A 2121 O HOH A 2224 2.02 REMARK 500 O HOH A 2041 O HOH A 2093 2.02 REMARK 500 O HOH A 2318 O HOH A 2549 2.02 REMARK 500 O HOH A 2324 O HOH A 2326 2.04 REMARK 500 O HOH A 2072 O HOH B 2602 2.04 REMARK 500 O HOH A 2368 O HOH A 2369 2.05 REMARK 500 OH TYR A 148 O HOH A 2377 2.06 REMARK 500 O HOH B 2188 O HOH B 2384 2.06 REMARK 500 O HOH B 2315 O HOH B 2316 2.07 REMARK 500 O HOH A 2242 O HOH A 2243 2.07 REMARK 500 O HOH A 2056 O HOH A 2059 2.07 REMARK 500 O HOH B 2492 O HOH B 2496 2.08 REMARK 500 O HOH B 2166 O HOH B 2335 2.08 REMARK 500 REMARK 500 THIS ENTRY HAS 91 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2251 O HOH B 2439 2545 1.97 REMARK 500 O HOH B 2047 O HOH B 2220 1454 2.10 REMARK 500 O HOH B 2163 O HOH B 2577 1454 2.11 REMARK 500 O HOH B 2028 O HOH B 2377 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 116.29 -39.63 REMARK 500 SER A 136 -128.05 55.49 REMARK 500 ARG A 156 -62.93 -93.39 REMARK 500 ALA A 177 43.77 -140.19 REMARK 500 ALA A 181 63.66 -151.84 REMARK 500 ASN A 210 82.27 -157.99 REMARK 500 PHE A 251 48.47 -140.93 REMARK 500 ALA B 23 84.91 -155.59 REMARK 500 SER B 136 -128.76 58.38 REMARK 500 ARG B 156 -60.75 -93.41 REMARK 500 ALA B 177 36.22 -146.49 REMARK 500 ALA B 181 65.54 -153.15 REMARK 500 SER B 186 -153.97 -88.30 REMARK 500 ASN B 210 84.44 -156.91 REMARK 500 ARG B 228 64.23 -119.25 REMARK 500 ALA B 295 50.60 -110.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2053 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2054 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2125 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2135 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2184 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2262 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2320 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A2424 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2608 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A2609 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2610 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A2611 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH B2019 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH B2066 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B2077 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH B2091 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2100 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH B2115 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B2169 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B2196 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B2202 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH B2281 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B2283 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH B2311 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B2313 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2619 DISTANCE = 7.73 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2605 O REMARK 620 2 HOH A2606 O 101.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2616 O REMARK 620 2 HOH B2618 O 100.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BTV RELATED DB: PDB REMARK 900 STRUCTURE OF PHAZ7 PHB DEPOLYMERASE IN COMPLEX WITH 3HB TRIMER REMARK 900 RELATED ID: 4BVK RELATED DB: PDB REMARK 900 STRUCTURE OF Y190E MUTANT OF PHAZ7 PHB DEPOLYMERASE REMARK 900 RELATED ID: 4BVL RELATED DB: PDB REMARK 900 STRUCTURE OF 202-208 DELETION MUTANT OF PHAZ7 PHB DEPOLYMERASE DBREF 4BVJ A 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 DBREF 4BVJ B 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 SEQADV 4BVJ ALA A 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQADV 4BVJ ASN A 343 UNP Q939Q9 EXPRESSION TAG SEQADV 4BVJ ALA B 105 UNP Q939Q9 TYR 143 ENGINEERED MUTATION SEQADV 4BVJ ASN B 343 UNP Q939Q9 EXPRESSION TAG SEQRES 1 A 343 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 A 343 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 A 343 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 A 343 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 A 343 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 A 343 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 A 343 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 A 343 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 A 343 ALA HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 A 343 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 A 343 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 A 343 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 A 343 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 A 343 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 A 343 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 A 343 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 A 343 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 A 343 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 A 343 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 A 343 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 A 343 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 A 343 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 A 343 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 A 343 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 A 343 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 A 343 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 A 343 LYS ALA ALA TYR ASN SEQRES 1 B 343 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 B 343 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 B 343 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 B 343 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 B 343 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 B 343 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 B 343 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 B 343 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 B 343 ALA HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 B 343 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 B 343 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 B 343 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 B 343 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 B 343 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 B 343 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 B 343 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 B 343 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 B 343 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 B 343 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 B 343 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 B 343 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 B 343 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 B 343 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 B 343 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 B 343 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 B 343 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 B 343 LYS ALA ALA TYR ASN HET NA A 501 1 HET NA A 601 1 HET NA B 501 1 HETNAM NA SODIUM ION FORMUL 3 NA 3(NA 1+) FORMUL 6 HOH *1230(H2 O) HELIX 1 1 ASN A 52 MET A 58 5 7 HELIX 2 2 SER A 72 ARG A 80 1 9 HELIX 3 3 SER A 94 GLY A 99 1 6 HELIX 4 4 SER A 100 ASN A 104 5 5 HELIX 5 5 SER A 107 GLY A 126 1 20 HELIX 6 6 SER A 136 ASN A 150 1 15 HELIX 7 7 ASN A 151 THR A 153 5 3 HELIX 8 8 LEU A 168 TYR A 172 5 5 HELIX 9 9 ALA A 181 GLY A 185 5 5 HELIX 10 10 SER A 220 ARG A 222 5 3 HELIX 11 11 ASP A 223 ARG A 228 1 6 HELIX 12 12 ALA A 238 ASP A 242 5 5 HELIX 13 13 GLY A 254 ALA A 258 5 5 HELIX 14 14 ASP A 286 GLY A 290 5 5 HELIX 15 15 PHE A 307 ASN A 312 1 6 HELIX 16 16 THR A 313 THR A 323 1 11 HELIX 17 17 THR A 326 ALA A 332 5 7 HELIX 18 18 ASN B 52 MET B 58 5 7 HELIX 19 19 SER B 72 ARG B 80 1 9 HELIX 20 20 SER B 94 GLY B 99 1 6 HELIX 21 21 SER B 100 ASN B 104 5 5 HELIX 22 22 SER B 107 GLY B 126 1 20 HELIX 23 23 SER B 136 ASN B 150 1 15 HELIX 24 24 ASN B 151 THR B 153 5 3 HELIX 25 25 LEU B 168 TYR B 172 5 5 HELIX 26 26 ALA B 181 GLY B 185 5 5 HELIX 27 27 SER B 220 ARG B 222 5 3 HELIX 28 28 ASP B 223 ARG B 228 1 6 HELIX 29 29 ALA B 238 LYS B 241 5 4 HELIX 30 30 ASP B 242 ALA B 247 1 6 HELIX 31 31 GLY B 254 ALA B 258 5 5 HELIX 32 32 ASP B 286 GLY B 290 5 5 HELIX 33 33 PHE B 307 ASN B 312 1 6 HELIX 34 34 THR B 313 THR B 323 1 11 HELIX 35 35 THR B 326 ALA B 332 5 7 SHEET 1 AA 9 THR A 16 TYR A 18 0 SHEET 2 AA 9 GLY A 30 GLY A 32 1 O GLY A 30 N GLN A 17 SHEET 3 AA 9 ILE A 87 VAL A 90 -1 O GLY A 89 N PHE A 31 SHEET 4 AA 9 VAL A 43 ILE A 46 1 O VAL A 43 N PHE A 88 SHEET 5 AA 9 VAL A 130 HIS A 135 1 O ASP A 131 N ILE A 44 SHEET 6 AA 9 VAL A 155 LEU A 161 1 N ARG A 156 O VAL A 130 SHEET 7 AA 9 SER A 232 SER A 237 1 O SER A 232 N PHE A 158 SHEET 8 AA 9 VAL A 268 ASN A 273 1 N LYS A 269 O PHE A 233 SHEET 9 AA 9 ALA A 340 ALA A 341 -1 O ALA A 340 N ASN A 273 SHEET 1 AB 2 GLY A 201 TYR A 203 0 SHEET 2 AB 2 VAL A 206 VAL A 208 -1 O VAL A 206 N TYR A 203 SHEET 1 BA 9 THR B 16 TYR B 18 0 SHEET 2 BA 9 GLY B 30 GLY B 32 1 O GLY B 30 N GLN B 17 SHEET 3 BA 9 ILE B 87 VAL B 90 -1 O GLY B 89 N PHE B 31 SHEET 4 BA 9 VAL B 43 ILE B 46 1 O VAL B 43 N PHE B 88 SHEET 5 BA 9 VAL B 130 HIS B 135 1 O ASP B 131 N ILE B 44 SHEET 6 BA 9 VAL B 155 LEU B 161 1 N ARG B 156 O VAL B 130 SHEET 7 BA 9 SER B 232 SER B 237 1 O SER B 232 N PHE B 158 SHEET 8 BA 9 VAL B 268 ASN B 273 1 N LYS B 269 O PHE B 233 SHEET 9 BA 9 ALA B 340 ALA B 341 -1 O ALA B 340 N ASN B 273 SHEET 1 BB 2 GLY B 201 TYR B 203 0 SHEET 2 BB 2 VAL B 206 VAL B 208 -1 O VAL B 206 N TYR B 203 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.04 SSBOND 2 CYS A 36 CYS A 85 1555 1555 2.04 SSBOND 3 CYS A 171 CYS A 184 1555 1555 2.04 SSBOND 4 CYS A 246 CYS A 255 1555 1555 2.04 SSBOND 5 CYS A 325 CYS A 330 1555 1555 2.03 SSBOND 6 CYS B 3 CYS B 11 1555 1555 2.04 SSBOND 7 CYS B 36 CYS B 85 1555 1555 2.03 SSBOND 8 CYS B 171 CYS B 184 1555 1555 2.04 SSBOND 9 CYS B 246 CYS B 255 1555 1555 2.04 SSBOND 10 CYS B 325 CYS B 330 1555 1555 2.02 LINK NA NA A 601 O HOH A2605 1555 1555 3.01 LINK NA NA A 601 O HOH A2606 1555 1555 2.95 LINK NA NA B 501 O HOH B2616 1555 1555 3.04 LINK NA NA B 501 O HOH B2618 1555 1555 3.18 SITE 1 AC1 2 ASN A 83 ASP A 84 SITE 1 AC2 4 CYS A 36 THR A 37 HOH A2605 HOH A2606 SITE 1 AC3 4 ALA B 23 PRO B 24 GLY B 25 HOH B2616 CRYST1 41.370 200.050 44.180 90.00 114.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024172 0.000000 0.010904 0.00000 SCALE2 0.000000 0.004999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024831 0.00000