HEADER HYDROLASE 01-JUL-13 4BWC TITLE X-RAY STRUCTURE OF A PHOSPHOLIAPSE B LIKE PROTEIN 1 FROM BOVINE TITLE 2 KIDNEYS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE B-LIKE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL SEGMENT, RESIDUES 36-205; COMPND 5 SYNONYM: LAMA-LIKE PROTEIN 1, LAMINA ANCESTOR HOMOLOG 1, COMPND 6 PHOSPHOLIPASE B DOMAIN-CONTAINING PROTEIN 1, PHOSPHOLIPASE B-LIKE COMPND 7 PROTEIN 1; COMPND 8 EC: 3.1.1.-; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHOSPHOLIPASE B-LIKE 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: C-TERMINAL SEGMENT, RESIDUES 225-545; COMPND 13 SYNONYM: LAMA-LIKE PROTEIN 1, LAMINA ANCESTOR HOMOLOG 1, COMPND 14 PHOSPHOLIPASE B DOMAIN-CONTAINING PROTEIN 1, PHOSPHOLIPASE B-LIKE COMPND 15 PROTEIN 1; COMPND 16 EC: 3.1.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: KIDNEY; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: BOVINE; SOURCE 9 ORGANISM_TAXID: 9913; SOURCE 10 ORGAN: KIDNEY KEYWDS HYDROLASE, GLYCOSYLATION, LYSOSOMAL STORAGE DISORDERS EXPDTA X-RAY DIFFRACTION AUTHOR H.REPO,E.KUOKKANEN,E.OKSANEN,A.GOLDMAN,P.HEIKINHEIMO REVDAT 4 20-DEC-23 4BWC 1 HETSYN REVDAT 3 29-JUL-20 4BWC 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 05-FEB-14 4BWC 1 JRNL REVDAT 1 18-SEP-13 4BWC 0 JRNL AUTH H.REPO,E.KUOKKANEN,E.OKSANEN,A.GOLDMAN,P.HEIKINHEIMO JRNL TITL IS THE BOVINE LYSOSOMAL PHOSPHOLIPASE B-LIKE PROTEIN AN JRNL TITL 2 AMIDASE? JRNL REF PROTEINS V. 82 300 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 23934913 JRNL DOI 10.1002/PROT.24388 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3127 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 143 REMARK 3 SOLVENT ATOMS : 184 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4272 ; 0.023 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5795 ; 2.181 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.751 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;37.358 ;23.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;14.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3215 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4BWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290056781. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62608 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 46.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.910 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3FBX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-CL PH 7, 40% PEG 300, 5% REMARK 280 PEG 1000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.98167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.96333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.96333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.98167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 146.05500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 84.32489 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.98167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 445 O HOH B 2107 2.14 REMARK 500 O TYR A 85 O HOH A 2002 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 242 CG HIS B 242 CD2 0.072 REMARK 500 HIS B 257 CG HIS B 257 CD2 0.054 REMARK 500 TRP B 320 CE2 TRP B 320 CD2 0.095 REMARK 500 TRP B 409 CE2 TRP B 409 CD2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 322 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 435 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP B 443 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 55 46.34 -88.84 REMARK 500 ARG A 59 -9.41 -59.73 REMARK 500 TYR A 150 55.78 -98.06 REMARK 500 TYR B 246 -165.53 -171.88 REMARK 500 MET B 251 27.20 -77.15 REMARK 500 SER B 276 -157.02 -157.88 REMARK 500 LEU B 281 39.80 -84.00 REMARK 500 LEU B 284 -44.12 65.14 REMARK 500 HIS B 364 -54.79 -141.46 REMARK 500 THR B 379 -5.77 74.39 REMARK 500 TYR B 398 49.21 -156.12 REMARK 500 ASP B 443 -175.21 -172.55 REMARK 500 ASN B 454 -70.47 -130.66 REMARK 500 HIS B 527 37.70 -160.18 REMARK 500 ASN B 535 45.34 -140.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 76 GLY A 77 147.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 4BWC A 36 205 UNP Q9GL30 PLBL1_BOVIN 36 205 DBREF 4BWC B 225 545 UNP Q9GL30 PLBL1_BOVIN 225 545 SEQRES 1 A 170 GLY VAL TYR TYR ALA THR ALA TYR TRP MET PRO THR GLU SEQRES 2 A 170 LYS THR ILE GLN VAL LYS ASN VAL LEU ASP ARG LYS GLY SEQRES 3 A 170 ASP ALA TYR GLY PHE TYR ASN ASN SER VAL LYS THR THR SEQRES 4 A 170 GLY TRP GLY ILE LEU GLU ILE LYS ALA GLY TYR GLY SER SEQRES 5 A 170 GLN SER LEU SER ASN GLU ILE ILE MET PHE ALA ALA GLY SEQRES 6 A 170 PHE LEU GLU GLY TYR LEU THR ALA PRO HIS MET ASP ASP SEQRES 7 A 170 HIS PHE THR ASN LEU TYR PRO GLN LEU ILE LYS LYS ARG SEQRES 8 A 170 SER MET LEU ASN LYS VAL GLN ASP PHE LEU THR LYS GLN SEQRES 9 A 170 ASP GLN TRP THR ARG GLU ASN ILE LYS TYR TYR LYS SER SEQRES 10 A 170 ASP PRO PHE TRP ARG HIS ALA ASP TYR VAL MET ALA GLN SEQRES 11 A 170 MET ASP GLY LEU PHE ALA GLY ALA THR LYS ARG ALA VAL SEQRES 12 A 170 LEU GLU GLY LYS LYS PRO MET THR LEU PHE GLN ILE GLN SEQRES 13 A 170 PHE LEU ASN ALA ILE GLY ASP LEU LEU ASP LEU ILE PRO SEQRES 14 A 170 SER SEQRES 1 B 321 OCS SER ALA LEU ILE LYS VAL LEU PRO GLY PHE GLU ASN SEQRES 2 B 321 ILE PHE PHE ALA HIS SER SER TRP TYR THR TYR ALA ALA SEQRES 3 B 321 MET LEU ARG ILE TYR LYS HIS TRP ASP PHE ASN ILE VAL SEQRES 4 B 321 ASP LYS ASP THR SER SER SER ARG LEU SER PHE SER SER SEQRES 5 B 321 TYR PRO GLY PHE LEU GLU SER LEU ASP ASP PHE TYR LEU SEQRES 6 B 321 LEU SER SER GLY LEU VAL LEU LEU GLN THR THR ASN SER SEQRES 7 B 321 VAL TYR ASN LYS THR LEU LEU GLN HIS VAL VAL PRO GLN SEQRES 8 B 321 SER LEU LEU ALA TRP GLN ARG VAL ARG VAL ALA SER MET SEQRES 9 B 321 MET ALA ASN ASN GLY LYS GLN TRP ALA GLU VAL PHE SER SEQRES 10 B 321 LYS TYR ASN SER GLY THR TYR ASN ASN GLN TYR MET VAL SEQRES 11 B 321 LEU ASP LEU LYS LYS VAL ASN LEU ASN HIS SER LEU ASP SEQRES 12 B 321 GLU GLY THR LEU TYR ILE VAL GLU GLN ILE PRO THR TYR SEQRES 13 B 321 VAL GLU TYR SER GLU GLN THR ALA VAL LEU ARG ARG GLY SEQRES 14 B 321 TYR TRP PRO SER TYR ASN ILE PRO PHE HIS GLU LYS VAL SEQRES 15 B 321 TYR ASN TRP SER GLY TYR PRO ILE LEU VAL LYS LYS LEU SEQRES 16 B 321 GLY LEU ASP TYR SER TYR ASP LEU ALA SER ARG ALA LYS SEQRES 17 B 321 ILE PHE ARG ARG ASP GLN GLY LYS VAL THR ASP MET GLU SEQRES 18 B 321 SER MET LYS TYR ILE MET ARG TYR ASN ASN TYR LYS GLN SEQRES 19 B 321 ASP PRO TYR SER LYS GLY ASP PRO CYS ASN THR VAL CYS SEQRES 20 B 321 CYS ARG GLU ASP LEU ASN SER HIS SER PRO SER PRO GLY SEQRES 21 B 321 GLY CYS TYR ASP THR LYS VAL ALA ASP ILE TYR LEU ALA SEQRES 22 B 321 SER LYS TYR LYS ALA TYR ALA ILE SER GLY PRO THR VAL SEQRES 23 B 321 GLN GLY GLY LEU PRO VAL PHE HIS TRP SER ARG PHE ASN SEQRES 24 B 321 LYS THR LEU HIS GLU GLY MET PRO GLU ALA TYR ASN PHE SEQRES 25 B 321 ASP PHE ILE THR MET LYS PRO ILE LEU MODRES 4BWC ASN A 68 ASN GLYCOSYLATION SITE MODRES 4BWC ASN B 305 ASN GLYCOSYLATION SITE MODRES 4BWC ASN B 363 ASN GLYCOSYLATION SITE MODRES 4BWC ASN B 408 ASN GLYCOSYLATION SITE MODRES 4BWC ASN B 523 ASN GLYCOSYLATION SITE MODRES 4BWC OCS B 225 CYS CYSTEINESULFONIC ACID HET OCS B 225 9 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET P4G A1206 11 HET NAG B1388 14 HET NAG B1503 14 HET P6G B1546 19 HET CL B1547 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM P4G 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 OCS C3 H7 N O5 S FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 6 P4G C8 H18 O3 FORMUL 9 P6G C12 H26 O7 FORMUL 10 CL CL 1- FORMUL 11 HOH *184(H2 O) HELIX 1 1 SER A 70 GLY A 75 1 6 HELIX 2 2 SER A 91 ILE A 123 1 33 HELIX 3 3 LYS A 125 TYR A 150 1 26 HELIX 4 4 ASP A 153 GLY A 181 1 29 HELIX 5 5 THR A 186 ALA A 195 1 10 HELIX 6 6 ALA A 195 ILE A 203 1 9 HELIX 7 7 ALA B 249 MET B 251 5 3 HELIX 8 8 ASN B 305 GLN B 310 1 6 HELIX 9 9 LEU B 318 ALA B 330 1 13 HELIX 10 10 ASN B 332 SER B 341 1 10 HELIX 11 11 GLN B 386 ARG B 392 1 7 HELIX 12 12 HIS B 403 SER B 410 1 8 HELIX 13 13 GLY B 411 GLY B 420 1 10 HELIX 14 14 LEU B 421 SER B 424 5 4 HELIX 15 15 ALA B 428 GLN B 438 1 11 HELIX 16 16 GLY B 439 VAL B 441 5 3 HELIX 17 17 ASP B 443 ARG B 452 1 10 HELIX 18 18 ASP B 459 LYS B 463 5 5 HELIX 19 19 GLU B 474 ASN B 477 5 4 HELIX 20 20 ILE B 494 LYS B 499 1 6 HELIX 21 21 SER B 520 ASN B 523 5 4 SHEET 1 AA11 THR A 50 LYS A 54 0 SHEET 2 AA11 VAL A 37 MET A 45 -1 O THR A 41 N LYS A 54 SHEET 3 AA11 ALA A 63 ASN A 68 -1 O ALA A 63 N ALA A 42 SHEET 4 AA11 TRP A 76 ALA A 83 -1 O ILE A 78 N ASN A 68 SHEET 5 AA11 ARG B 253 PHE B 260 1 O ARG B 253 N GLY A 77 SHEET 6 AA11 ARG B 271 SER B 276 -1 O LEU B 272 N TRP B 258 SHEET 7 AA11 PHE B 287 LEU B 290 -1 O PHE B 287 N SER B 275 SHEET 8 AA11 LEU B 294 THR B 300 -1 O LEU B 294 N LEU B 290 SHEET 9 AA11 ASN B 350 ASP B 356 -1 O GLN B 351 N THR B 299 SHEET 10 AA11 LEU B 371 ILE B 377 -1 O TYR B 372 N VAL B 354 SHEET 11 AA11 TYR B 380 GLU B 385 -1 O TYR B 380 N ILE B 377 SHEET 1 BA 6 TYR B 394 SER B 397 0 SHEET 2 BA 6 SER B 226 VAL B 231 -1 O ALA B 227 N SER B 397 SHEET 3 BA 6 ILE B 238 SER B 243 -1 O PHE B 239 N LYS B 230 SHEET 4 BA 6 ASP B 488 ASP B 493 -1 O LYS B 490 N HIS B 242 SHEET 5 BA 6 ALA B 502 SER B 506 -1 O TYR B 503 N VAL B 491 SHEET 6 BA 6 ILE B 539 MET B 541 -1 O ILE B 539 N ALA B 504 SHEET 1 BB 2 TRP B 245 THR B 247 0 SHEET 2 BB 2 GLY B 484 CYS B 486 -1 O GLY B 485 N TYR B 246 SHEET 1 BC 2 VAL B 360 ASN B 361 0 SHEET 2 BC 2 SER B 365 LEU B 366 -1 O SER B 365 N ASN B 361 SHEET 1 BD 2 PHE B 517 HIS B 518 0 SHEET 2 BD 2 ALA B 533 TYR B 534 -1 O TYR B 534 N PHE B 517 SSBOND 1 CYS B 467 CYS B 472 1555 1555 2.09 SSBOND 2 CYS B 471 CYS B 486 1555 1555 2.14 LINK ND2 ASN A 68 C1 NAG C 1 1555 1555 1.43 LINK C OCS B 225 N SER B 226 1555 1555 1.34 LINK ND2 ASN B 305 C1 NAG D 1 1555 1555 1.42 LINK ND2 ASN B 363 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 408 C1 NAG B1388 1555 1555 1.43 LINK ND2 ASN B 523 C1 NAG B1503 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 CISPEP 1 ASP B 285 ASP B 286 0 3.20 CRYST1 97.370 97.370 140.945 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010270 0.005929 0.000000 0.00000 SCALE2 0.000000 0.011859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007095 0.00000