HEADER GENE REGULATION 04-JUL-13 4BWK TITLE STRUCTURE OF NEUROSPORA CRASSA PAN3 PSEUDOKINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PSEUDOKINASE DOMAIN, COILED COIL, CTERMINAL KNOB, RESIDUES COMPND 5 234-656; COMPND 6 SYNONYM: PAB1P-DEPENDENT POLY(A)-NUCLEASE, PAB-DEPENDENT POLYA- COMPND 7 SPECIFIC RIBONUCLEASE SUBUNIT PAN-3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNEA-NPM KEYWDS GENE REGULATION, DEADENYLASE, PAN2, MIRNA, MRNA DECAY EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRISTIE,A.BOLAND,E.HUNTZINGER,O.WEICHENRIEDER,E.IZAURRALDE REVDAT 3 08-MAY-24 4BWK 1 REMARK REVDAT 2 28-AUG-13 4BWK 1 JRNL REVDAT 1 21-AUG-13 4BWK 0 JRNL AUTH M.CHRISTIE,A.BOLAND,E.HUNTZINGER,O.WEICHENRIEDER, JRNL AUTH 2 E.IZAURRALDE JRNL TITL STRUCTURE OF THE PAN3 PSEUDOKINASE REVEALS THE BASIS FOR JRNL TITL 2 INTERACTIONS WITH THE PAN2 DEADENYLASE AND THE GW182 JRNL TITL 3 PROTEINS JRNL REF MOL.CELL V. 51 360 2013 JRNL REFN ISSN 1097-2765 JRNL PMID 23932717 JRNL DOI 10.1016/J.MOLCEL.2013.07.011 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0311 - 5.9931 1.00 2477 126 0.2111 0.2418 REMARK 3 2 5.9931 - 4.7585 1.00 2462 137 0.2641 0.3044 REMARK 3 3 4.7585 - 4.1574 1.00 2458 144 0.2664 0.3137 REMARK 3 4 4.1574 - 3.7775 1.00 2441 131 0.2803 0.3781 REMARK 3 5 3.7775 - 3.5069 1.00 2454 124 0.3064 0.3137 REMARK 3 6 3.5069 - 3.3002 0.99 2445 117 0.3620 0.3934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 117.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6545 REMARK 3 ANGLE : 1.524 8866 REMARK 3 CHIRALITY : 0.057 993 REMARK 3 PLANARITY : 0.007 1124 REMARK 3 DIHEDRAL : 14.002 2426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 235:646) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6735 27.7266 -34.2508 REMARK 3 T TENSOR REMARK 3 T11: 0.5407 T22: 0.2625 REMARK 3 T33: 0.5009 T12: 0.0659 REMARK 3 T13: 0.3667 T23: 0.1373 REMARK 3 L TENSOR REMARK 3 L11: 0.7194 L22: 0.5883 REMARK 3 L33: 0.5765 L12: 0.0108 REMARK 3 L13: -0.0766 L23: 0.2726 REMARK 3 S TENSOR REMARK 3 S11: 0.8969 S12: 0.6930 S13: 0.0354 REMARK 3 S21: -0.0327 S22: -0.7471 S23: -0.2365 REMARK 3 S31: 0.5298 S32: 0.2322 S33: 0.0717 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 235:646) REMARK 3 ORIGIN FOR THE GROUP (A): -39.7426 26.6032 -16.7690 REMARK 3 T TENSOR REMARK 3 T11: 1.2172 T22: 0.3648 REMARK 3 T33: 0.5627 T12: -0.8599 REMARK 3 T13: 0.3884 T23: -0.3073 REMARK 3 L TENSOR REMARK 3 L11: 0.3692 L22: 0.5279 REMARK 3 L33: 0.2486 L12: -0.0794 REMARK 3 L13: -0.0168 L23: 0.2582 REMARK 3 S TENSOR REMARK 3 S11: 0.4872 S12: -0.1338 S13: 0.0442 REMARK 3 S21: 0.0145 S22: -0.6300 S23: -0.1411 REMARK 3 S31: 0.0535 S32: -0.7680 S33: -0.1525 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15611 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 7% PEG 6000, 6% REMARK 280 ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.52600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.26300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.39450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.13150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 190.65750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 228 REMARK 465 PRO A 229 REMARK 465 HIS A 230 REMARK 465 MET A 231 REMARK 465 LEU A 232 REMARK 465 GLU A 233 REMARK 465 ILE A 234 REMARK 465 ASN A 368 REMARK 465 ASN A 369 REMARK 465 SER A 370 REMARK 465 HIS A 371 REMARK 465 ASN A 372 REMARK 465 ARG A 373 REMARK 465 LEU A 374 REMARK 465 ARG A 375 REMARK 465 ASN A 376 REMARK 465 THR A 377 REMARK 465 GLY A 558 REMARK 465 ASP A 559 REMARK 465 SER A 560 REMARK 465 CYS A 561 REMARK 465 GLY A 562 REMARK 465 VAL A 563 REMARK 465 HIS A 564 REMARK 465 ASN A 565 REMARK 465 TRP A 566 REMARK 465 SER A 567 REMARK 465 SER A 647 REMARK 465 LYS A 648 REMARK 465 PRO A 649 REMARK 465 SER A 650 REMARK 465 ALA A 651 REMARK 465 THR A 652 REMARK 465 GLY A 653 REMARK 465 ALA A 654 REMARK 465 THR A 655 REMARK 465 ILE A 656 REMARK 465 GLY B 228 REMARK 465 PRO B 229 REMARK 465 HIS B 230 REMARK 465 MET B 231 REMARK 465 LEU B 232 REMARK 465 GLU B 233 REMARK 465 ILE B 234 REMARK 465 ASN B 369 REMARK 465 SER B 370 REMARK 465 HIS B 371 REMARK 465 ASN B 372 REMARK 465 ARG B 373 REMARK 465 LEU B 374 REMARK 465 ARG B 375 REMARK 465 ASN B 376 REMARK 465 THR B 377 REMARK 465 ASP B 435 REMARK 465 SER B 436 REMARK 465 PRO B 437 REMARK 465 ASN B 438 REMARK 465 ARG B 439 REMARK 465 GLY B 558 REMARK 465 ASP B 559 REMARK 465 SER B 560 REMARK 465 CYS B 561 REMARK 465 GLY B 562 REMARK 465 VAL B 563 REMARK 465 HIS B 564 REMARK 465 ASN B 565 REMARK 465 TRP B 566 REMARK 465 SER B 567 REMARK 465 GLU B 568 REMARK 465 SER B 647 REMARK 465 LYS B 648 REMARK 465 PRO B 649 REMARK 465 SER B 650 REMARK 465 ALA B 651 REMARK 465 THR B 652 REMARK 465 GLY B 653 REMARK 465 ALA B 654 REMARK 465 THR B 655 REMARK 465 ILE B 656 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 357 O2' AGS A 1647 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 500 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO A 500 C - N - CD ANGL. DEV. = -18.4 DEGREES REMARK 500 PRO B 500 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 PRO B 500 C - N - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 311 118.51 -168.17 REMARK 500 ARG A 407 -63.50 69.75 REMARK 500 SER A 427 -4.00 74.54 REMARK 500 THR A 514 -112.42 62.04 REMARK 500 ARG A 593 78.23 -106.53 REMARK 500 ASN A 621 1.48 -62.55 REMARK 500 ASN B 311 118.02 -167.89 REMARK 500 PRO B 367 79.15 -60.20 REMARK 500 ARG B 407 -62.54 68.66 REMARK 500 SER B 427 -6.49 73.49 REMARK 500 THR B 514 -113.18 58.24 REMARK 500 ARG B 593 72.90 -106.50 REMARK 500 ASN B 621 5.16 -69.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 497 SER B 498 -148.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 533 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 1647 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS B 1647 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BWP RELATED DB: PDB REMARK 900 STRUCTURE OF DROSOPHILA MELANOGASTER PAN3 PSEUDOKINASE REMARK 900 RELATED ID: 4BWX RELATED DB: PDB REMARK 900 STRUCTURE OF NEUROSPORA CRASSA PAN3 PSEUDOKINASE MUTANT DBREF 4BWK A 234 656 UNP Q7SDP4 PAN3_NEUCR 234 656 DBREF 4BWK B 234 656 UNP Q7SDP4 PAN3_NEUCR 234 656 SEQADV 4BWK GLY A 228 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK PRO A 229 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK HIS A 230 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK MET A 231 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK LEU A 232 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK GLU A 233 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK GLY B 228 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK PRO B 229 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK HIS B 230 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK MET B 231 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK LEU B 232 UNP Q7SDP4 EXPRESSION TAG SEQADV 4BWK GLU B 233 UNP Q7SDP4 EXPRESSION TAG SEQRES 1 A 429 GLY PRO HIS MET LEU GLU ILE PRO LYS ASP ARG ARG GLU SEQRES 2 A 429 ASN LEU GLN LYS LYS LEU PHE HIS MET GLN GLN LEU LEU SEQRES 3 A 429 PRO ASN SER GLY LEU PRO ASN LEU ASP ARG TRP HIS SER SEQRES 4 A 429 LEU PHE PRO LEU ASP THR LYS ALA THR ARG ASN SER THR SEQRES 5 A 429 CYS PHE GLY TYR PRO SER TRP MET TYR LYS ALA GLN ASN SEQRES 6 A 429 ASN LYS ASN GLY ARG HIS PHE ALA LEU ARG ARG ILE GLU SEQRES 7 A 429 GLY TYR ARG LEU THR ASN GLU LYS ALA ILE LEU ASN VAL SEQRES 8 A 429 THR LYS GLU TRP LYS LYS ILE ILE ASN ALA ASN ILE VAL SEQRES 9 A 429 THR VAL HIS GLU ALA PHE THR THR GLU PHE PHE GLY ASP SEQRES 10 A 429 SER SER LEU ILE PHE VAL TYR ASP PHE HIS PRO LEU SER SEQRES 11 A 429 GLU THR LEU TYR ASP HIS HIS PHE PRO PRO ASN ASN SER SEQRES 12 A 429 HIS ASN ARG LEU ARG ASN THR ASN LYS ILE PRO GLU ASN SEQRES 13 A 429 LEU LEU TRP SER TYR VAL CYS GLN ILE ALA ASN ALA LEU SEQRES 14 A 429 LEU ALA ILE HIS ASN ALA LYS LEU ALA ALA ARG CYS LEU SEQRES 15 A 429 GLU LEU SER LYS ILE ILE TRP GLU ASN ASN ARG ILE ARG SEQRES 16 A 429 LEU ALA ALA CYS SER ILE LEU ASP VAL LEU HIS HIS ASP SEQRES 17 A 429 SER PRO ASN ARG LYS THR ILE GLU GLU LEU GLN GLN GLU SEQRES 18 A 429 ASP PHE VAL LYS PHE GLY ARG ILE ILE LEU ALA LEU ALA SEQRES 19 A 429 THR ASN THR PRO THR LEU ASN PHE ASN ASN ILE ASP ALA SEQRES 20 A 429 ALA LEU ALA THR ILE VAL PRO ARG TYR SER THR GLN LEU SEQRES 21 A 429 ARG GLY VAL LEU GLU TRP LEU ILE LYS PRO SER ALA PRO SEQRES 22 A 429 GLY GLU THR LYS THR VAL GLU THR LEU LEU GLY GLY ILE SEQRES 23 A 429 THR THR HIS LEU ALA ASN PHE ALA ASN PHE VAL MET GLN SEQRES 24 A 429 GLU SER ASP GLU LYS GLU PHE HIS LEU MET ARG GLU LEU SEQRES 25 A 429 GLU ASN GLY ARG ILE ALA ARG LEU MET PHE LYS LEU SER SEQRES 26 A 429 VAL VAL ASN GLU ARG GLY ASP SER CYS GLY VAL HIS ASN SEQRES 27 A 429 TRP SER GLU THR GLY GLU ARG LEU LEU LEU LYS LEU PHE SEQRES 28 A 429 ARG ASP TYR VAL PHE HIS GLN VAL ASP ALA ASP GLY LYS SEQRES 29 A 429 ALA ARG LEU ASP THR ASN HIS TYR LEU ASN CYS LEU SER SEQRES 30 A 429 LYS LEU ASP ALA SER SER GLU GLU GLN ILE LEU LEU THR SEQRES 31 A 429 SER ARG ASP ASN ALA THR VAL PHE VAL VAL SER TYR ARG SEQRES 32 A 429 SER ILE ARG GLN MET LEU ASP ARG ALA TYR GLY GLU LEU SEQRES 33 A 429 GLY LYS GLU SER LYS PRO SER ALA THR GLY ALA THR ILE SEQRES 1 B 429 GLY PRO HIS MET LEU GLU ILE PRO LYS ASP ARG ARG GLU SEQRES 2 B 429 ASN LEU GLN LYS LYS LEU PHE HIS MET GLN GLN LEU LEU SEQRES 3 B 429 PRO ASN SER GLY LEU PRO ASN LEU ASP ARG TRP HIS SER SEQRES 4 B 429 LEU PHE PRO LEU ASP THR LYS ALA THR ARG ASN SER THR SEQRES 5 B 429 CYS PHE GLY TYR PRO SER TRP MET TYR LYS ALA GLN ASN SEQRES 6 B 429 ASN LYS ASN GLY ARG HIS PHE ALA LEU ARG ARG ILE GLU SEQRES 7 B 429 GLY TYR ARG LEU THR ASN GLU LYS ALA ILE LEU ASN VAL SEQRES 8 B 429 THR LYS GLU TRP LYS LYS ILE ILE ASN ALA ASN ILE VAL SEQRES 9 B 429 THR VAL HIS GLU ALA PHE THR THR GLU PHE PHE GLY ASP SEQRES 10 B 429 SER SER LEU ILE PHE VAL TYR ASP PHE HIS PRO LEU SER SEQRES 11 B 429 GLU THR LEU TYR ASP HIS HIS PHE PRO PRO ASN ASN SER SEQRES 12 B 429 HIS ASN ARG LEU ARG ASN THR ASN LYS ILE PRO GLU ASN SEQRES 13 B 429 LEU LEU TRP SER TYR VAL CYS GLN ILE ALA ASN ALA LEU SEQRES 14 B 429 LEU ALA ILE HIS ASN ALA LYS LEU ALA ALA ARG CYS LEU SEQRES 15 B 429 GLU LEU SER LYS ILE ILE TRP GLU ASN ASN ARG ILE ARG SEQRES 16 B 429 LEU ALA ALA CYS SER ILE LEU ASP VAL LEU HIS HIS ASP SEQRES 17 B 429 SER PRO ASN ARG LYS THR ILE GLU GLU LEU GLN GLN GLU SEQRES 18 B 429 ASP PHE VAL LYS PHE GLY ARG ILE ILE LEU ALA LEU ALA SEQRES 19 B 429 THR ASN THR PRO THR LEU ASN PHE ASN ASN ILE ASP ALA SEQRES 20 B 429 ALA LEU ALA THR ILE VAL PRO ARG TYR SER THR GLN LEU SEQRES 21 B 429 ARG GLY VAL LEU GLU TRP LEU ILE LYS PRO SER ALA PRO SEQRES 22 B 429 GLY GLU THR LYS THR VAL GLU THR LEU LEU GLY GLY ILE SEQRES 23 B 429 THR THR HIS LEU ALA ASN PHE ALA ASN PHE VAL MET GLN SEQRES 24 B 429 GLU SER ASP GLU LYS GLU PHE HIS LEU MET ARG GLU LEU SEQRES 25 B 429 GLU ASN GLY ARG ILE ALA ARG LEU MET PHE LYS LEU SER SEQRES 26 B 429 VAL VAL ASN GLU ARG GLY ASP SER CYS GLY VAL HIS ASN SEQRES 27 B 429 TRP SER GLU THR GLY GLU ARG LEU LEU LEU LYS LEU PHE SEQRES 28 B 429 ARG ASP TYR VAL PHE HIS GLN VAL ASP ALA ASP GLY LYS SEQRES 29 B 429 ALA ARG LEU ASP THR ASN HIS TYR LEU ASN CYS LEU SER SEQRES 30 B 429 LYS LEU ASP ALA SER SER GLU GLU GLN ILE LEU LEU THR SEQRES 31 B 429 SER ARG ASP ASN ALA THR VAL PHE VAL VAL SER TYR ARG SEQRES 32 B 429 SER ILE ARG GLN MET LEU ASP ARG ALA TYR GLY GLU LEU SEQRES 33 B 429 GLY LYS GLU SER LYS PRO SER ALA THR GLY ALA THR ILE HET AGS A1647 31 HET AGS B1647 31 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 AGS 2(C10 H16 N5 O12 P3 S) HELIX 1 1 LYS A 236 GLN A 250 1 15 HELIX 2 2 GLU A 312 TRP A 322 1 11 HELIX 3 3 LEU A 360 HIS A 364 1 5 HELIX 4 4 GLU A 382 HIS A 400 1 19 HELIX 5 5 LEU A 429 LEU A 432 1 4 HELIX 6 6 ILE A 442 THR A 462 1 21 HELIX 7 7 ILE A 479 ARG A 482 1 4 HELIX 8 8 THR A 485 ILE A 495 1 11 HELIX 9 9 VAL A 506 ILE A 513 1 8 HELIX 10 10 THR A 515 VAL A 554 1 40 HELIX 11 11 ARG A 572 PHE A 583 1 12 HELIX 12 12 THR A 596 ASP A 607 1 12 HELIX 13 13 TYR A 629 LYS A 645 1 17 HELIX 14 14 LYS B 236 GLN B 250 1 15 HELIX 15 15 LYS B 313 TRP B 322 1 10 HELIX 16 16 LEU B 360 HIS B 364 1 5 HELIX 17 17 GLU B 382 ASN B 401 1 20 HELIX 18 18 ILE B 428 LEU B 432 1 5 HELIX 19 19 ILE B 442 ALA B 461 1 20 HELIX 20 20 THR B 485 ILE B 495 1 11 HELIX 21 21 VAL B 506 ILE B 513 1 8 HELIX 22 22 THR B 515 VAL B 554 1 40 HELIX 23 23 ARG B 572 PHE B 583 1 12 HELIX 24 24 THR B 596 ASP B 607 1 12 HELIX 25 25 TYR B 629 LEU B 643 1 15 SHEET 1 AA 5 TRP A 264 PRO A 269 0 SHEET 2 AA 5 SER A 285 ASN A 292 -1 O LYS A 289 N PHE A 268 SHEET 3 AA 5 HIS A 298 GLU A 305 -1 O PHE A 299 N ALA A 290 SHEET 4 AA 5 SER A 346 ASP A 352 -1 O LEU A 347 N ILE A 304 SHEET 5 AA 5 VAL A 333 THR A 339 -1 N HIS A 334 O VAL A 350 SHEET 1 AB 3 GLU A 358 THR A 359 0 SHEET 2 AB 3 ILE A 414 GLU A 417 -1 O TRP A 416 N GLU A 358 SHEET 3 AB 3 ARG A 420 LEU A 423 -1 O ARG A 420 N GLU A 417 SHEET 1 AC 2 GLN A 613 THR A 617 0 SHEET 2 AC 2 VAL A 624 SER A 628 -1 O PHE A 625 N LEU A 616 SHEET 1 BA 5 TRP B 264 PRO B 269 0 SHEET 2 BA 5 SER B 285 ASN B 292 -1 O LYS B 289 N PHE B 268 SHEET 3 BA 5 HIS B 298 GLU B 305 -1 O PHE B 299 N ALA B 290 SHEET 4 BA 5 SER B 346 ASP B 352 -1 O LEU B 347 N ILE B 304 SHEET 5 BA 5 VAL B 333 THR B 339 -1 N HIS B 334 O VAL B 350 SHEET 1 BB 3 GLU B 358 THR B 359 0 SHEET 2 BB 3 ILE B 414 GLU B 417 -1 O TRP B 416 N GLU B 358 SHEET 3 BB 3 ARG B 420 LEU B 423 -1 O ARG B 420 N GLU B 417 SHEET 1 BC 2 GLN B 613 THR B 617 0 SHEET 2 BC 2 VAL B 624 SER B 628 -1 O PHE B 625 N LEU B 616 SITE 1 AC1 15 LEU A 270 ASP A 271 THR A 272 THR A 275 SITE 2 AC1 15 ARG A 276 MET A 287 ARG A 302 VAL A 331 SITE 3 AC1 15 ASP A 352 HIS A 354 SER A 357 GLU A 358 SITE 4 AC1 15 THR A 359 SER A 412 LYS A 413 SITE 1 AC2 14 ASP B 271 ARG B 276 ASN B 277 SER B 285 SITE 2 AC2 14 MET B 287 ARG B 302 VAL B 331 ASP B 352 SITE 3 AC2 14 PHE B 353 HIS B 354 SER B 357 THR B 359 SITE 4 AC2 14 LYS B 413 ILE B 415 CRYST1 89.521 89.521 228.789 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011171 0.006449 0.000000 0.00000 SCALE2 0.000000 0.012899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004371 0.00000 MTRIX1 1 -0.998000 0.014000 0.057000 -61.72517 1 MTRIX2 1 0.037000 0.904000 0.426000 16.72507 1 MTRIX3 1 -0.046000 0.428000 -0.903000 -60.32031 1