HEADER HYDROLASE 08-JUL-13 4BX3 TITLE CRYSTAL STRUCTURE OF MURINE CHRONOPHIN (PYRIDOXAL PHOSPHATE TITLE 2 PHOSPHATASE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAL PHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PLP PHOSPHATASE, CHRONOPHIN, PLPP; COMPND 5 EC: 3.1.3.74, 3.1.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS HYDROLASE, PDXP, HAD PHOSPHATASE, HAD-LIKE HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KNOBLOCH,A.GOHLA,H.SCHINDELIN REVDAT 3 20-DEC-23 4BX3 1 REMARK LINK ATOM REVDAT 2 12-FEB-14 4BX3 1 JRNL REVDAT 1 25-DEC-13 4BX3 0 JRNL AUTH C.KESTLER,G.KNOBLOCH,I.TESSMER,E.JEANCLOS,H.SCHINDELIN, JRNL AUTH 2 A.GOHLA JRNL TITL CHRONOPHIN DIMERIZATION IS REQUIRED FOR PROPER POSITIONING JRNL TITL 2 OF ITS SUBSTRATE SPECIFICITY LOOP. JRNL REF J.BIOL.CHEM. V. 289 3094 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24338687 JRNL DOI 10.1074/JBC.M113.536482 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6686 - 5.2827 1.00 2799 166 0.1713 0.1885 REMARK 3 2 5.2827 - 4.1941 1.00 2734 135 0.1387 0.1717 REMARK 3 3 4.1941 - 3.6642 1.00 2722 139 0.1438 0.1706 REMARK 3 4 3.6642 - 3.3293 1.00 2698 148 0.1636 0.2078 REMARK 3 5 3.3293 - 3.0907 1.00 2690 142 0.1694 0.2060 REMARK 3 6 3.0907 - 2.9085 1.00 2678 151 0.1839 0.2476 REMARK 3 7 2.9085 - 2.7629 1.00 2701 141 0.1982 0.2502 REMARK 3 8 2.7629 - 2.6426 1.00 2679 138 0.2002 0.2448 REMARK 3 9 2.6426 - 2.5409 1.00 2661 139 0.1953 0.2894 REMARK 3 10 2.5409 - 2.4532 1.00 2683 141 0.2090 0.2527 REMARK 3 11 2.4532 - 2.3765 1.00 2688 132 0.2084 0.2286 REMARK 3 12 2.3765 - 2.3086 1.00 2696 136 0.2147 0.2613 REMARK 3 13 2.3086 - 2.2478 1.00 2694 142 0.2321 0.2589 REMARK 3 14 2.2478 - 2.1930 0.99 2622 146 0.2398 0.2771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 22.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.62340 REMARK 3 B22 (A**2) : -0.17680 REMARK 3 B33 (A**2) : 0.11060 REMARK 3 B12 (A**2) : -0.00390 REMARK 3 B13 (A**2) : 0.08880 REMARK 3 B23 (A**2) : 0.61240 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4550 REMARK 3 ANGLE : 1.640 6168 REMARK 3 CHIRALITY : 0.094 688 REMARK 3 PLANARITY : 0.010 829 REMARK 3 DIHEDRAL : 15.910 1713 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 44.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2OYC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH 8, 0.2M NACL, 1M REMARK 280 SODIUM TARTRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.55000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 83.55000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 83.55000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 83.55000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 83.55000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 83.55000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 83.55000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 83.55000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 83.55000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 83.55000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 83.55000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 83.55000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 83.55000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 83.55000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 83.55000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 83.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2076 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 291 REMARK 465 ASP A 292 REMARK 465 GLY B 0 REMARK 465 ASP B 292 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 107 O HOH B 2032 2.10 REMARK 500 OE2 GLU B 116 O HOH B 2038 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH22 ARG B 3 O GLY B 256 12555 1.56 REMARK 500 NH2 ARG A 128 O GLY A 270 6555 2.14 REMARK 500 OD2 ASP A 14 NH1 ARG B 62 20545 2.15 REMARK 500 O ARG A 49 NH2 ARG B 81 22545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 MET A 214 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 CYS A 217 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 -72.21 -157.81 REMARK 500 CYS A 26 -68.86 -100.64 REMARK 500 VAL A 29 -53.54 -120.33 REMARK 500 ASP A 105 -38.23 93.44 REMARK 500 ALA A 106 43.64 -79.30 REMARK 500 GLU A 135 -118.16 -41.38 REMARK 500 ASP A 136 110.07 160.26 REMARK 500 CYS B 26 -67.28 -102.13 REMARK 500 VAL B 29 -57.02 -122.11 REMARK 500 ALA B 106 57.55 -67.16 REMARK 500 ASP B 182 3.12 -69.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD2 REMARK 620 2 ASP A 27 O 96.3 REMARK 620 3 ASP A 234 OD1 86.4 95.4 REMARK 620 4 HOH A2010 O 86.6 95.6 167.5 REMARK 620 5 HOH A2011 O 76.7 173.0 85.0 83.4 REMARK 620 6 HOH A2012 O 174.2 89.4 93.7 92.2 97.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 25 OD2 REMARK 620 2 ASP B 27 O 90.9 REMARK 620 3 ASP B 234 OD1 90.0 87.5 REMARK 620 4 HOH B2004 O 80.7 101.8 166.9 REMARK 620 5 HOH B2005 O 65.1 152.2 79.0 88.6 REMARK 620 6 HOH B2006 O 168.3 99.3 96.1 91.5 106.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1292 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BX0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MONOMERIC VARIANT OF MURINE CHRONOPHIN REMARK 900 (PYRIDOXAL PHOSPHATE PHOSPHATASE) REMARK 900 RELATED ID: 4BX2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MURINE CHRONOPHIN (PYRIDOXAL PHOSPHATE REMARK 900 PHOSPHATASE) IN COMPLEX WITH BERYLLIUM TRIFLUORIDE DBREF 4BX3 A 1 292 UNP P60487 PLPP_MOUSE 1 292 DBREF 4BX3 B 1 292 UNP P60487 PLPP_MOUSE 1 292 SEQADV 4BX3 GLY A 0 UNP P60487 EXPRESSION TAG SEQADV 4BX3 PRO A 101 UNP P60487 SER 101 CONFLICT SEQADV 4BX3 GLY B 0 UNP P60487 EXPRESSION TAG SEQADV 4BX3 PRO B 101 UNP P60487 SER 101 CONFLICT SEQRES 1 A 293 GLY MET ALA ARG CYS GLU ARG LEU ARG GLY ALA ALA LEU SEQRES 2 A 293 ARG ASP VAL LEU GLY GLN ALA GLN GLY VAL LEU PHE ASP SEQRES 3 A 293 CYS ASP GLY VAL LEU TRP ASN GLY GLU ARG ILE VAL PRO SEQRES 4 A 293 GLY ALA PRO GLU LEU LEU GLN ARG LEU ALA ARG ALA GLY SEQRES 5 A 293 LYS ASN THR LEU PHE VAL SER ASN ASN SER ARG ARG ALA SEQRES 6 A 293 ARG PRO GLU LEU ALA LEU ARG PHE ALA ARG LEU GLY PHE SEQRES 7 A 293 ALA GLY LEU ARG ALA GLU GLN LEU PHE SER SER ALA LEU SEQRES 8 A 293 CYS ALA ALA ARG LEU LEU ARG GLN ARG LEU PRO GLY PRO SEQRES 9 A 293 PRO ASP ALA SER GLY ALA VAL PHE VAL LEU GLY GLY GLU SEQRES 10 A 293 GLY LEU ARG ALA GLU LEU ARG ALA ALA GLY LEU ARG LEU SEQRES 11 A 293 ALA GLY ASP PRO GLY GLU ASP PRO ARG VAL ARG ALA VAL SEQRES 12 A 293 LEU VAL GLY TYR ASP GLU GLN PHE SER PHE SER ARG LEU SEQRES 13 A 293 THR GLU ALA CYS ALA HIS LEU ARG ASP PRO ASP CYS LEU SEQRES 14 A 293 LEU VAL ALA THR ASP ARG ASP PRO TRP HIS PRO LEU SER SEQRES 15 A 293 ASP GLY SER ARG THR PRO GLY THR GLY SER LEU ALA ALA SEQRES 16 A 293 ALA VAL GLU THR ALA SER GLY ARG GLN ALA LEU VAL VAL SEQRES 17 A 293 GLY LYS PRO SER PRO TYR MET PHE GLN CYS ILE THR GLU SEQRES 18 A 293 ASP PHE SER VAL ASP PRO ALA ARG THR LEU MET VAL GLY SEQRES 19 A 293 ASP ARG LEU GLU THR ASP ILE LEU PHE GLY HIS ARG CYS SEQRES 20 A 293 GLY MET THR THR VAL LEU THR LEU THR GLY VAL SER SER SEQRES 21 A 293 LEU GLU GLU ALA GLN ALA TYR LEU THR ALA GLY GLN ARG SEQRES 22 A 293 ASP LEU VAL PRO HIS TYR TYR VAL GLU SER ILE ALA ASP SEQRES 23 A 293 LEU MET GLU GLY LEU GLU ASP SEQRES 1 B 293 GLY MET ALA ARG CYS GLU ARG LEU ARG GLY ALA ALA LEU SEQRES 2 B 293 ARG ASP VAL LEU GLY GLN ALA GLN GLY VAL LEU PHE ASP SEQRES 3 B 293 CYS ASP GLY VAL LEU TRP ASN GLY GLU ARG ILE VAL PRO SEQRES 4 B 293 GLY ALA PRO GLU LEU LEU GLN ARG LEU ALA ARG ALA GLY SEQRES 5 B 293 LYS ASN THR LEU PHE VAL SER ASN ASN SER ARG ARG ALA SEQRES 6 B 293 ARG PRO GLU LEU ALA LEU ARG PHE ALA ARG LEU GLY PHE SEQRES 7 B 293 ALA GLY LEU ARG ALA GLU GLN LEU PHE SER SER ALA LEU SEQRES 8 B 293 CYS ALA ALA ARG LEU LEU ARG GLN ARG LEU PRO GLY PRO SEQRES 9 B 293 PRO ASP ALA SER GLY ALA VAL PHE VAL LEU GLY GLY GLU SEQRES 10 B 293 GLY LEU ARG ALA GLU LEU ARG ALA ALA GLY LEU ARG LEU SEQRES 11 B 293 ALA GLY ASP PRO GLY GLU ASP PRO ARG VAL ARG ALA VAL SEQRES 12 B 293 LEU VAL GLY TYR ASP GLU GLN PHE SER PHE SER ARG LEU SEQRES 13 B 293 THR GLU ALA CYS ALA HIS LEU ARG ASP PRO ASP CYS LEU SEQRES 14 B 293 LEU VAL ALA THR ASP ARG ASP PRO TRP HIS PRO LEU SER SEQRES 15 B 293 ASP GLY SER ARG THR PRO GLY THR GLY SER LEU ALA ALA SEQRES 16 B 293 ALA VAL GLU THR ALA SER GLY ARG GLN ALA LEU VAL VAL SEQRES 17 B 293 GLY LYS PRO SER PRO TYR MET PHE GLN CYS ILE THR GLU SEQRES 18 B 293 ASP PHE SER VAL ASP PRO ALA ARG THR LEU MET VAL GLY SEQRES 19 B 293 ASP ARG LEU GLU THR ASP ILE LEU PHE GLY HIS ARG CYS SEQRES 20 B 293 GLY MET THR THR VAL LEU THR LEU THR GLY VAL SER SER SEQRES 21 B 293 LEU GLU GLU ALA GLN ALA TYR LEU THR ALA GLY GLN ARG SEQRES 22 B 293 ASP LEU VAL PRO HIS TYR TYR VAL GLU SER ILE ALA ASP SEQRES 23 B 293 LEU MET GLU GLY LEU GLU ASP HET MG A 301 1 HET GOL A1292 14 HET MG B 302 1 HET GOL B1292 14 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *178(H2 O) HELIX 1 1 ARG A 8 ALA A 19 1 12 HELIX 2 2 GLY A 39 ALA A 50 1 12 HELIX 3 3 ALA A 64 LEU A 75 1 12 HELIX 4 4 ARG A 81 GLU A 83 5 3 HELIX 5 5 SER A 88 LEU A 100 1 13 HELIX 6 6 GLY A 115 ALA A 125 1 11 HELIX 7 7 SER A 151 ARG A 163 1 13 HELIX 8 8 GLY A 188 GLY A 201 1 14 HELIX 9 9 SER A 211 GLU A 220 1 10 HELIX 10 10 ASP A 225 ALA A 227 5 3 HELIX 11 11 THR A 238 GLY A 247 1 10 HELIX 12 12 SER A 259 ALA A 269 1 11 HELIX 13 13 GLN A 271 VAL A 275 5 5 HELIX 14 14 SER A 282 LEU A 290 5 9 HELIX 15 15 ARG B 8 ALA B 19 1 12 HELIX 16 16 GLY B 39 ALA B 50 1 12 HELIX 17 17 ALA B 64 LEU B 75 1 12 HELIX 18 18 ARG B 81 GLU B 83 5 3 HELIX 19 19 SER B 88 LEU B 100 1 13 HELIX 20 20 GLY B 115 ALA B 125 1 11 HELIX 21 21 SER B 151 ASP B 164 1 14 HELIX 22 22 GLY B 188 GLY B 201 1 14 HELIX 23 23 PRO B 212 PHE B 222 1 11 HELIX 24 24 ASP B 225 ALA B 227 5 3 HELIX 25 25 THR B 238 CYS B 246 1 9 HELIX 26 26 SER B 259 ALA B 269 1 11 HELIX 27 27 GLN B 271 VAL B 275 5 5 HELIX 28 28 SER B 282 LEU B 290 5 9 SHEET 1 AA 7 GLU A 5 ARG A 6 0 SHEET 2 AA 7 TYR A 278 VAL A 280 1 N TYR A 279 O GLU A 5 SHEET 3 AA 7 THR A 249 THR A 253 1 O THR A 250 N TYR A 278 SHEET 4 AA 7 THR A 229 GLY A 233 1 O THR A 229 N THR A 249 SHEET 5 AA 7 GLY A 21 PHE A 24 1 O GLY A 21 N LEU A 230 SHEET 6 AA 7 ASN A 53 SER A 58 1 O ASN A 53 N VAL A 22 SHEET 7 AA 7 LEU A 85 SER A 87 1 O PHE A 86 N SER A 58 SHEET 1 AB 2 TRP A 31 ASN A 32 0 SHEET 2 AB 2 ARG A 35 ILE A 36 -1 O ARG A 35 N ASN A 32 SHEET 1 AC 4 ALA A 109 LEU A 113 0 SHEET 2 AC 4 VAL A 139 VAL A 144 1 N ARG A 140 O ALA A 109 SHEET 3 AC 4 LEU A 168 ALA A 171 1 O LEU A 168 N VAL A 142 SHEET 4 AC 4 LEU A 205 VAL A 206 1 O LEU A 205 N ALA A 171 SHEET 1 AD 2 TRP A 177 PRO A 179 0 SHEET 2 AD 2 ARG A 185 PRO A 187 -1 O THR A 186 N HIS A 178 SHEET 1 BA 7 GLU B 5 ARG B 6 0 SHEET 2 BA 7 TYR B 278 VAL B 280 1 N TYR B 279 O GLU B 5 SHEET 3 BA 7 THR B 249 THR B 253 1 O THR B 250 N TYR B 278 SHEET 4 BA 7 THR B 229 GLY B 233 1 O THR B 229 N THR B 249 SHEET 5 BA 7 GLY B 21 PHE B 24 1 O GLY B 21 N LEU B 230 SHEET 6 BA 7 ASN B 53 SER B 58 1 O ASN B 53 N VAL B 22 SHEET 7 BA 7 LEU B 85 SER B 87 1 O PHE B 86 N SER B 58 SHEET 1 BB 2 TRP B 31 ASN B 32 0 SHEET 2 BB 2 ARG B 35 ILE B 36 -1 O ARG B 35 N ASN B 32 SHEET 1 BC 5 ARG B 128 LEU B 129 0 SHEET 2 BC 5 ALA B 109 LEU B 113 1 N VAL B 110 O ARG B 128 SHEET 3 BC 5 VAL B 139 VAL B 144 1 N ARG B 140 O ALA B 109 SHEET 4 BC 5 LEU B 168 ALA B 171 1 O LEU B 168 N VAL B 142 SHEET 5 BC 5 LEU B 205 VAL B 206 1 O LEU B 205 N ALA B 171 SHEET 1 BD 2 TRP B 177 PRO B 179 0 SHEET 2 BD 2 ARG B 185 PRO B 187 -1 O THR B 186 N HIS B 178 SSBOND 1 CYS A 91 CYS A 217 1555 1555 2.14 SSBOND 2 CYS B 91 CYS B 217 1555 1555 2.09 LINK OD2 ASP A 25 MG MG A 301 1555 1555 2.17 LINK O ASP A 27 MG MG A 301 1555 1555 2.17 LINK OD1 ASP A 234 MG MG A 301 1555 1555 2.12 LINK MG MG A 301 O HOH A2010 1555 1555 2.01 LINK MG MG A 301 O HOH A2011 1555 1555 2.27 LINK MG MG A 301 O HOH A2012 1555 1555 2.08 LINK OD2 ASP B 25 MG MG B 302 1555 1555 2.22 LINK O ASP B 27 MG MG B 302 1555 1555 2.40 LINK OD1 ASP B 234 MG MG B 302 1555 1555 2.25 LINK MG MG B 302 O HOH B2004 1555 1555 2.11 LINK MG MG B 302 O HOH B2005 1555 1555 2.05 LINK MG MG B 302 O HOH B2006 1555 1555 2.29 CISPEP 1 LYS A 209 PRO A 210 0 6.49 CISPEP 2 LYS B 209 PRO B 210 0 6.32 SITE 1 AC1 6 ASP A 25 ASP A 27 ASP A 234 HOH A2010 SITE 2 AC1 6 HOH A2011 HOH A2012 SITE 1 AC2 6 ASP B 25 ASP B 27 ASP B 234 HOH B2004 SITE 2 AC2 6 HOH B2005 HOH B2006 SITE 1 AC3 3 ARG A 62 TYR A 146 HIS A 178 SITE 1 AC4 3 ARG B 174 VAL B 206 HOH B2074 CRYST1 167.100 167.100 167.100 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005984 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005984 0.00000 MTRIX1 1 0.080870 0.956800 -0.279300 63.05000 1 MTRIX2 1 0.959500 -0.150600 -0.238200 -42.02000 1 MTRIX3 1 -0.269900 -0.248800 -0.930200 100.30000 1