HEADER HYDROLASE 12-JUL-13 4BXJ TITLE CRYSTAL STRUCTURE OF AMPDH3 FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMPDH3; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.1.28; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 28 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CARRASCO-LOPEZ,J.A.HERMOSO REVDAT 3 20-DEC-23 4BXJ 1 REMARK ATOM REVDAT 2 25-DEC-13 4BXJ 1 REMARK SHEET SITE CRYST1 REVDAT 2 2 1 ATOM MASTER REVDAT 1 09-OCT-13 4BXJ 0 JRNL AUTH M.LEE,C.ARTOLA-RECOLONS,C.CARRASCO-LOPEZ, JRNL AUTH 2 S.MARTINEZ-CABALLERO,D.HESEK,E.SPINK,E.LASTOCHKIN,W.ZHANG, JRNL AUTH 3 L.M.HELLMAN,B.BOGGESS,J.A.HERMOSO,S.MOBASHERY JRNL TITL CELL-WALL REMODELING BY THE ZINC-PROTEASE AMPDH3 FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA. JRNL REF J.AM.CHEM.SOC. V. 135 12604 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23931161 JRNL DOI 10.1021/JA407445X REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 32593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6374 - 5.9183 0.99 2291 190 0.1659 0.2051 REMARK 3 2 5.9183 - 4.6988 0.98 2157 168 0.1492 0.2059 REMARK 3 3 4.6988 - 4.1052 0.98 2123 164 0.1291 0.1608 REMARK 3 4 4.1052 - 3.7300 0.97 2077 175 0.1434 0.1915 REMARK 3 5 3.7300 - 3.4627 0.97 2059 169 0.1775 0.2332 REMARK 3 6 3.4627 - 3.2586 0.95 2027 157 0.2168 0.2400 REMARK 3 7 3.2586 - 3.0954 0.93 1986 151 0.2290 0.2814 REMARK 3 8 3.0954 - 2.9607 0.89 1894 146 0.2566 0.3204 REMARK 3 9 2.9607 - 2.8467 0.88 1845 138 0.2992 0.3340 REMARK 3 10 2.8467 - 2.7485 0.87 1836 140 0.2918 0.3774 REMARK 3 11 2.7485 - 2.6626 0.85 1798 137 0.3336 0.3597 REMARK 3 12 2.6626 - 2.5865 0.81 1695 136 0.3434 0.3938 REMARK 3 13 2.5865 - 2.5184 0.79 1679 95 0.3526 0.4296 REMARK 3 14 2.5184 - 2.4570 0.77 1615 114 0.3872 0.4704 REMARK 3 15 2.4570 - 2.4011 0.78 1627 121 0.4171 0.4442 REMARK 3 16 2.4011 - 2.3500 0.75 1577 106 0.4547 0.5658 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4205 REMARK 3 ANGLE : 1.187 5718 REMARK 3 CHIRALITY : 0.083 597 REMARK 3 PLANARITY : 0.005 753 REMARK 3 DIHEDRAL : 14.333 1535 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36822 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4BJ4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.23750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.90250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.90250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.11875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.90250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.90250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.35625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.90250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.90250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.11875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.90250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.90250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 123.35625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.23750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 328.95000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2029 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 109 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 1256 O HOH A 2148 1.91 REMARK 500 O THR B 3 O HOH A 2050 1.94 REMARK 500 O HOH A 2067 O HOH A 2130 1.96 REMARK 500 OG SER B 56 O HOH B 2017 2.00 REMARK 500 O GLY A 84 O HOH A 2066 2.01 REMARK 500 O HOH A 2006 O HOH B 2020 2.04 REMARK 500 O HOH A 2052 O HOH B 2006 2.05 REMARK 500 O HOH B 2063 O HOH B 2067 2.08 REMARK 500 OE2 GLU A 241 O HOH A 2140 2.09 REMARK 500 OD2 ASP A 137 O HOH A 2019 2.13 REMARK 500 O HOH A 2107 O HOH A 2111 2.15 REMARK 500 OD2 ASP B 156 O HOH B 2013 2.17 REMARK 500 O HOH A 2045 O HOH A 2109 2.19 REMARK 500 O HOH A 2014 O HOH A 2032 2.19 REMARK 500 OE1 GLU B 73 NH2 ARG B 134 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2003 O HOH B 2008 7557 1.56 REMARK 500 O HOH A 2088 O HOH B 2045 7557 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 -74.23 -112.12 REMARK 500 LYS A 63 -70.84 -138.93 REMARK 500 HIS A 79 -33.43 -133.35 REMARK 500 LEU A 103 54.62 -91.86 REMARK 500 ASP A 107 -76.50 -76.13 REMARK 500 ALA A 150 67.90 -118.41 REMARK 500 ASN A 233 111.46 -161.76 REMARK 500 TYR A 253 75.60 -118.77 REMARK 500 THR B 12 -76.87 -110.08 REMARK 500 HIS B 53 58.63 -98.07 REMARK 500 LYS B 63 -82.44 -125.40 REMARK 500 TRP B 85 137.27 -177.20 REMARK 500 LEU B 103 40.78 -80.40 REMARK 500 ASP B 106 -3.44 -157.56 REMARK 500 ASP B 107 66.02 66.87 REMARK 500 ASP B 214 155.21 -46.63 REMARK 500 ASP B 239 -168.28 -100.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2085 DISTANCE = 6.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1258 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BXD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMPDH3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX REMARK 900 WITH TETRASACCHARIDE PENTAPEPTIDE REMARK 900 RELATED ID: 4BXE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMPDH3 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX REMARK 900 WITH ANHYDROMURAMIC PENTAPEPTIDE DBREF 4BXJ A 1 255 UNP Q9I5D1 Q9I5D1_PSEAE 1 255 DBREF 4BXJ B 1 255 UNP Q9I5D1 Q9I5D1_PSEAE 1 255 SEQRES 1 A 255 MET LEU THR ILE ASP TYR ASN SER TYR ARG THR THR THR SEQRES 2 A 255 PRO TYR GLY LYS ARG VAL ARG PHE LEU VAL LEU HIS TYR SEQRES 3 A 255 THR ALA LEU ASP PHE ALA ALA SER VAL LYS ALA LEU THR SEQRES 4 A 255 THR GLY ALA ALA SER ALA HIS TYR LEU ILE PRO ALA PRO SEQRES 5 A 255 HIS ASP PRO SER TYR LYS ALA ALA GLY PHE LYS GLY GLN SEQRES 6 A 255 ARG ILE PHE ASN LEU VAL ALA GLU GLU ASP ARG ALA TRP SEQRES 7 A 255 HIS ALA GLY VAL SER GLY TRP ALA ARG ARG ASP ASN LEU SEQRES 8 A 255 ASN ASP THR SER ILE GLY ILE GLU ILE VAL ASN LEU ALA SEQRES 9 A 255 ARG ASP ASP ASP GLY VAL PHE THR PHE PRO ASP TYR GLU SEQRES 10 A 255 ARG SER GLN ILE ASN ALA LEU LYS GLN LEU ALA LYS ASN SEQRES 11 A 255 ILE LEU GLN ARG TYR PRO ASP MET THR PRO LYS ASN VAL SEQRES 12 A 255 VAL GLY HIS SER ASP ILE ALA VAL GLY ARG LYS SER ASP SEQRES 13 A 255 PRO GLY PRO LYS LEU PRO TRP LYS GLU LEU TYR GLU ALA SEQRES 14 A 255 GLY ILE GLY ALA TRP TYR ASP ASP ALA THR ARG ASP ARG SEQRES 15 A 255 TYR ARG GLU GLY PHE GLU ARG ASP GLY LEU PRO PRO ARG SEQRES 16 A 255 ALA ASP LEU LEU GLU ALA PHE ARG LEU TYR GLY TYR ALA SEQRES 17 A 255 LEU PRO ALA THR VAL ASP ASP ALA TYR PHE ALA SER LEU SEQRES 18 A 255 LEU ARG ALA PHE GLN MET HIS PHE ARG PRO GLU ASN TYR SEQRES 19 A 255 ASP GLY ALA LEU ASP VAL GLU THR ALA ALA ILE LEU TYR SEQRES 20 A 255 ALA LEU ASN GLU LYS TYR PRO ALA SEQRES 1 B 255 MET LEU THR ILE ASP TYR ASN SER TYR ARG THR THR THR SEQRES 2 B 255 PRO TYR GLY LYS ARG VAL ARG PHE LEU VAL LEU HIS TYR SEQRES 3 B 255 THR ALA LEU ASP PHE ALA ALA SER VAL LYS ALA LEU THR SEQRES 4 B 255 THR GLY ALA ALA SER ALA HIS TYR LEU ILE PRO ALA PRO SEQRES 5 B 255 HIS ASP PRO SER TYR LYS ALA ALA GLY PHE LYS GLY GLN SEQRES 6 B 255 ARG ILE PHE ASN LEU VAL ALA GLU GLU ASP ARG ALA TRP SEQRES 7 B 255 HIS ALA GLY VAL SER GLY TRP ALA ARG ARG ASP ASN LEU SEQRES 8 B 255 ASN ASP THR SER ILE GLY ILE GLU ILE VAL ASN LEU ALA SEQRES 9 B 255 ARG ASP ASP ASP GLY VAL PHE THR PHE PRO ASP TYR GLU SEQRES 10 B 255 ARG SER GLN ILE ASN ALA LEU LYS GLN LEU ALA LYS ASN SEQRES 11 B 255 ILE LEU GLN ARG TYR PRO ASP MET THR PRO LYS ASN VAL SEQRES 12 B 255 VAL GLY HIS SER ASP ILE ALA VAL GLY ARG LYS SER ASP SEQRES 13 B 255 PRO GLY PRO LYS LEU PRO TRP LYS GLU LEU TYR GLU ALA SEQRES 14 B 255 GLY ILE GLY ALA TRP TYR ASP ASP ALA THR ARG ASP ARG SEQRES 15 B 255 TYR ARG GLU GLY PHE GLU ARG ASP GLY LEU PRO PRO ARG SEQRES 16 B 255 ALA ASP LEU LEU GLU ALA PHE ARG LEU TYR GLY TYR ALA SEQRES 17 B 255 LEU PRO ALA THR VAL ASP ASP ALA TYR PHE ALA SER LEU SEQRES 18 B 255 LEU ARG ALA PHE GLN MET HIS PHE ARG PRO GLU ASN TYR SEQRES 19 B 255 ASP GLY ALA LEU ASP VAL GLU THR ALA ALA ILE LEU TYR SEQRES 20 B 255 ALA LEU ASN GLU LYS TYR PRO ALA HET GOL A1256 6 HET GOL A1257 6 HET GOL A1258 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *236(H2 O) HELIX 1 1 ASP A 30 THR A 40 1 11 HELIX 2 2 ASP A 54 ALA A 60 1 7 HELIX 3 3 GLU A 117 GLN A 133 1 17 HELIX 4 4 THR A 139 LYS A 141 5 3 HELIX 5 5 HIS A 146 ALA A 150 1 5 HELIX 6 6 PRO A 162 ALA A 169 1 8 HELIX 7 7 ASP A 176 GLY A 191 1 16 HELIX 8 8 PRO A 194 GLY A 206 1 13 HELIX 9 9 ASP A 214 ARG A 230 1 17 HELIX 10 10 ASP A 239 TYR A 253 1 15 HELIX 11 11 ASP B 30 GLY B 41 1 12 HELIX 12 12 ASP B 54 ALA B 60 1 7 HELIX 13 13 GLU B 117 GLN B 133 1 17 HELIX 14 14 THR B 139 LYS B 141 5 3 HELIX 15 15 HIS B 146 ALA B 150 1 5 HELIX 16 16 PRO B 162 ALA B 169 1 8 HELIX 17 17 ASP B 176 GLY B 191 1 16 HELIX 18 18 PRO B 194 GLY B 206 1 13 HELIX 19 19 ASP B 214 ARG B 230 1 17 HELIX 20 20 ASP B 239 TYR B 253 1 15 SHEET 1 AA 6 ILE A 4 ASP A 5 0 SHEET 2 AA 6 ILE B 67 ASN B 69 1 O ILE B 67 N ASP A 5 SHEET 3 AA 6 TYR B 47 ILE B 49 -1 O LEU B 48 N PHE B 68 SHEET 4 AA 6 SER B 95 ILE B 100 1 O GLY B 97 N TYR B 47 SHEET 5 AA 6 PHE B 21 TYR B 26 1 O PHE B 21 N ILE B 96 SHEET 6 AA 6 VAL B 143 GLY B 145 1 O VAL B 144 N LEU B 24 SHEET 1 AB 2 TYR A 15 LYS A 17 0 SHEET 2 AB 2 ASP B 75 ALA B 77 -1 O ARG B 76 N GLY A 16 SHEET 1 AC 6 VAL A 143 GLY A 145 0 SHEET 2 AC 6 PHE A 21 TYR A 26 1 O LEU A 22 N VAL A 144 SHEET 3 AC 6 SER A 95 ILE A 100 1 O ILE A 96 N VAL A 23 SHEET 4 AC 6 TYR A 47 ILE A 49 1 O TYR A 47 N GLU A 99 SHEET 5 AC 6 ILE A 67 ASN A 69 -1 O PHE A 68 N LEU A 48 SHEET 6 AC 6 ILE B 4 ASP B 5 1 O ASP B 5 N ASN A 69 SHEET 1 AD 2 ASP A 75 ALA A 77 0 SHEET 2 AD 2 TYR B 15 LYS B 17 -1 O GLY B 16 N ARG A 76 SHEET 1 AE 2 GLY A 84 TRP A 85 0 SHEET 2 AE 2 ARG A 88 ASP A 89 -1 O ARG A 88 N TRP A 85 SHEET 1 AF 2 ARG A 105 ASP A 106 0 SHEET 2 AF 2 PHE A 111 THR A 112 -1 O THR A 112 N ARG A 105 SHEET 1 BA 2 GLY B 84 TRP B 85 0 SHEET 2 BA 2 ARG B 88 ASP B 89 -1 O ARG B 88 N TRP B 85 SHEET 1 BB 2 ARG B 105 ASP B 106 0 SHEET 2 BB 2 PHE B 111 THR B 112 -1 O THR B 112 N ARG B 105 CISPEP 1 ASP A 156 PRO A 157 0 7.51 CISPEP 2 ARG B 105 ASP B 106 0 -9.66 CISPEP 3 VAL B 151 GLY B 152 0 -9.10 CISPEP 4 ASP B 156 PRO B 157 0 5.19 CISPEP 5 GLU B 185 GLY B 186 0 19.52 SITE 1 AC1 5 ALA A 60 GLY A 61 PHE A 62 GOL A1257 SITE 2 AC1 5 HOH A2148 SITE 1 AC2 2 GOL A1256 HOH A2150 SITE 1 AC3 4 TYR A 26 ALA A 28 ASP A 106 PHE A 111 CRYST1 101.805 101.805 164.475 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006080 0.00000