HEADER HYDROLASE 19-JUL-13 4BYG TITLE ATPASE CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER EFFLUX ATPASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, CATION TRANSPORT PROTEINS, HEPATOLENTICULAR DEGENERATION, KEYWDS 2 MENKES KINKY HAIR SYNDROME, SARCOPLASMIC RETICULUM CALCIUM- KEYWDS 3 TRANSPORTING ATPASES EXPDTA X-RAY DIFFRACTION AUTHOR D.MATTLE,N.D.DRACHMANN,X.Y.LIU,B.P.PEDERSEN,J.P.MORTH,J.WANG, AUTHOR 2 P.GOURDON,P.NISSEN REVDAT 4 20-DEC-23 4BYG 1 REMARK LINK REVDAT 3 06-FEB-19 4BYG 1 REMARK REVDAT 2 30-JAN-19 4BYG 1 REMARK REVDAT 1 06-AUG-14 4BYG 0 JRNL AUTH D.MATTLE,N.D.DRACHMANN,X.Y.LIU,B.P.PEDERSEN,J.P.MORTH, JRNL AUTH 2 J.WANG,P.GOURDON,P.NISSEN JRNL TITL DEPHOSPHORYLATION OF PIB-TYPE CU(I)-ATPASES AS STUDIED BY JRNL TITL 2 METALLOFLUORIDE COMPLEXES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 22876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9843 - 5.6114 1.00 3227 172 0.1988 0.2458 REMARK 3 2 5.6114 - 4.4934 1.00 3110 160 0.2040 0.2792 REMARK 3 3 4.4934 - 3.9372 1.00 3056 176 0.2007 0.2630 REMARK 3 4 3.9372 - 3.5826 1.00 3027 171 0.2370 0.2960 REMARK 3 5 3.5826 - 3.3288 1.00 3007 164 0.2817 0.3093 REMARK 3 6 3.3288 - 3.1345 0.96 2878 148 0.3091 0.3825 REMARK 3 7 3.1345 - 2.9788 0.73 2177 125 0.3531 0.3567 REMARK 3 8 2.9788 - 2.8500 0.40 1212 66 0.3919 0.4244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.00 REMARK 3 B_SOL : 0.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5070 REMARK 3 ANGLE : 0.915 6871 REMARK 3 CHIRALITY : 0.058 824 REMARK 3 PLANARITY : 0.003 864 REMARK 3 DIHEDRAL : 16.027 1861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 74 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1187 8.6744 -80.1080 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.0597 REMARK 3 T33: 0.2843 T12: -0.1288 REMARK 3 T13: 0.1518 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.2961 L22: 3.8362 REMARK 3 L33: 1.6228 L12: -0.9247 REMARK 3 L13: -0.9796 L23: -0.2230 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: 0.0407 S13: -0.0076 REMARK 3 S21: -0.2062 S22: 0.0219 S23: -0.1495 REMARK 3 S31: -0.2088 S32: -0.0702 S33: -0.0408 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 188 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6132 2.0230 -43.3076 REMARK 3 T TENSOR REMARK 3 T11: 0.5897 T22: 0.5651 REMARK 3 T33: 0.3609 T12: -0.0285 REMARK 3 T13: 0.0769 T23: -0.0636 REMARK 3 L TENSOR REMARK 3 L11: 0.5033 L22: 0.5862 REMARK 3 L33: 0.9864 L12: 0.0167 REMARK 3 L13: -0.2539 L23: -0.2630 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: -0.5740 S13: 0.1566 REMARK 3 S21: 0.3506 S22: 0.0078 S23: -0.1685 REMARK 3 S31: -0.3477 S32: 0.4352 S33: -0.0848 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 426 THROUGH 580 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6280 -14.9418 -14.5503 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.8624 REMARK 3 T33: 0.4449 T12: 0.1398 REMARK 3 T13: 0.0634 T23: 0.1941 REMARK 3 L TENSOR REMARK 3 L11: 1.4815 L22: 0.6155 REMARK 3 L33: 1.9805 L12: -0.0184 REMARK 3 L13: -1.6320 L23: 0.3495 REMARK 3 S TENSOR REMARK 3 S11: 0.2987 S12: -0.1028 S13: 0.1256 REMARK 3 S21: -0.3167 S22: -0.1763 S23: -0.0361 REMARK 3 S31: -0.2657 S32: -0.1568 S33: -0.0446 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 581 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2439 -11.2746 -52.2280 REMARK 3 T TENSOR REMARK 3 T11: 0.3253 T22: 0.3024 REMARK 3 T33: 0.3096 T12: 0.0580 REMARK 3 T13: 0.1060 T23: 0.0900 REMARK 3 L TENSOR REMARK 3 L11: 0.7826 L22: 0.4384 REMARK 3 L33: 4.1336 L12: -0.0270 REMARK 3 L13: -0.6013 L23: -0.6902 REMARK 3 S TENSOR REMARK 3 S11: -0.1796 S12: -0.3097 S13: -0.1699 REMARK 3 S21: -0.0813 S22: 0.0295 S23: -0.1704 REMARK 3 S31: 0.2533 S32: 0.0286 S33: 0.0581 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 71.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 37.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 1.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3RFU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6 % (W/V) PEG6K, 10 % (V/V) GLYCEROL, REMARK 280 140 MM NACL, 3 % V/V T-BUOH, 5 MM BME, PH 6.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 164.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 164.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 ASP A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 HIS A 9 REMARK 465 THR A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 GLY A 15 REMARK 465 HIS A 16 REMARK 465 ALA A 17 REMARK 465 CYS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 GLU A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLN A 28 REMARK 465 GLN A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 SER A 32 REMARK 465 LYS A 33 REMARK 465 MET A 34 REMARK 465 GLU A 35 REMARK 465 GLY A 36 REMARK 465 PRO A 37 REMARK 465 ILE A 38 REMARK 465 VAL A 39 REMARK 465 TYR A 40 REMARK 465 THR A 41 REMARK 465 CYS A 42 REMARK 465 PRO A 43 REMARK 465 MET A 44 REMARK 465 HIS A 45 REMARK 465 PRO A 46 REMARK 465 GLU A 47 REMARK 465 ILE A 48 REMARK 465 ARG A 49 REMARK 465 GLN A 50 REMARK 465 SER A 51 REMARK 465 ALA A 52 REMARK 465 PRO A 53 REMARK 465 GLY A 54 REMARK 465 HIS A 55 REMARK 465 CYS A 56 REMARK 465 PRO A 57 REMARK 465 LEU A 58 REMARK 465 CYS A 59 REMARK 465 GLY A 60 REMARK 465 MET A 61 REMARK 465 ALA A 62 REMARK 465 LEU A 63 REMARK 465 GLU A 64 REMARK 465 PRO A 65 REMARK 465 GLU A 66 REMARK 465 THR A 67 REMARK 465 VAL A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 SER A 71 REMARK 465 GLU A 72 REMARK 465 VAL A 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 426 AL ALF A 995 1.72 REMARK 500 OD1 ASP A 426 F1 ALF A 995 2.07 REMARK 500 OD2 ASP A 426 F2 ALF A 995 2.09 REMARK 500 O THR A 277 O HOH A 2014 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 363 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 106 -73.39 -124.00 REMARK 500 PHE A 108 81.46 28.61 REMARK 500 THR A 143 -62.75 -109.19 REMARK 500 SER A 179 -162.07 -77.50 REMARK 500 ALA A 192 -72.50 -60.19 REMARK 500 GLU A 232 -133.28 36.62 REMARK 500 SER A 235 33.50 -89.66 REMARK 500 GLU A 237 146.17 -170.26 REMARK 500 ALA A 245 -156.64 -128.10 REMARK 500 THR A 277 -52.92 62.30 REMARK 500 GLU A 286 -134.81 -88.47 REMARK 500 THR A 299 84.84 49.92 REMARK 500 HIS A 308 163.34 60.55 REMARK 500 SER A 311 34.97 -66.89 REMARK 500 ASP A 312 -1.92 -165.35 REMARK 500 LEU A 367 -55.26 86.89 REMARK 500 LYS A 409 -73.62 -96.05 REMARK 500 ASN A 421 -9.87 -144.45 REMARK 500 LYS A 427 -62.47 -101.56 REMARK 500 THR A 430 -69.07 -127.80 REMARK 500 PHE A 446 130.81 -173.75 REMARK 500 GLU A 463 73.92 -100.40 REMARK 500 ALA A 486 119.78 -162.50 REMARK 500 ALA A 489 101.67 -56.35 REMARK 500 ASN A 519 89.10 -161.91 REMARK 500 GLU A 552 -164.91 -124.33 REMARK 500 ASP A 624 -3.37 -148.68 REMARK 500 HIS A 658 -6.77 66.87 REMARK 500 LEU A 661 32.36 -92.86 REMARK 500 SER A 721 -70.74 -54.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 734 THR A 735 148.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P A 1000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 996 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 426 OD2 REMARK 620 2 THR A 428 O 76.1 REMARK 620 3 ASP A 624 OD1 78.2 72.3 REMARK 620 4 HOH A2015 O 167.0 100.7 113.2 REMARK 620 5 HOH A2021 O 75.6 149.0 89.7 109.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ALF A 995 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MG A 996 MG REMARK 620 2 ALF A 995 F1 152.7 REMARK 620 3 ALF A 995 F2 27.1 179.4 REMARK 620 4 ALF A 995 F3 64.7 89.5 90.5 REMARK 620 5 ALF A 995 F4 115.6 90.4 89.6 178.7 REMARK 620 6 HOH A2014 O 99.4 85.3 95.3 82.8 95.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 995 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 1000 DBREF 4BYG A 1 736 UNP Q5ZWR1 Q5ZWR1_LEGPH 1 736 SEQRES 1 A 736 MET LYS HIS ASP HIS HIS GLN GLY HIS THR HIS SER GLY SEQRES 2 A 736 LYS GLY HIS ALA CYS HIS HIS GLU HIS ASN SER PRO LYS SEQRES 3 A 736 THR GLN GLN ALA SER SER LYS MET GLU GLY PRO ILE VAL SEQRES 4 A 736 TYR THR CYS PRO MET HIS PRO GLU ILE ARG GLN SER ALA SEQRES 5 A 736 PRO GLY HIS CYS PRO LEU CYS GLY MET ALA LEU GLU PRO SEQRES 6 A 736 GLU THR VAL THR VAL SER GLU VAL VAL SER PRO GLU TYR SEQRES 7 A 736 LEU ASP MET ARG ARG ARG PHE TRP ILE ALA LEU MET LEU SEQRES 8 A 736 THR ILE PRO VAL VAL ILE LEU GLU MET GLY GLY HIS GLY SEQRES 9 A 736 LEU LYS HIS PHE ILE SER GLY ASN GLY SER SER TRP ILE SEQRES 10 A 736 GLN LEU LEU LEU ALA THR PRO VAL VAL LEU TRP GLY GLY SEQRES 11 A 736 TRP PRO PHE PHE LYS ARG GLY TRP GLN SER LEU LYS THR SEQRES 12 A 736 GLY GLN LEU ASN MET PHE THR LEU ILE ALA MET GLY ILE SEQRES 13 A 736 GLY VAL ALA TRP ILE TYR SER MET VAL ALA VAL LEU TRP SEQRES 14 A 736 PRO GLY VAL PHE PRO HIS ALA PHE ARG SER GLN GLU GLY SEQRES 15 A 736 VAL VAL ALA VAL TYR PHE GLU ALA ALA ALA VAL ILE THR SEQRES 16 A 736 THR LEU VAL LEU LEU GLY GLN VAL LEU GLU LEU LYS ALA SEQRES 17 A 736 ARG GLU GLN THR GLY SER ALA ILE ARG ALA LEU LEU LYS SEQRES 18 A 736 LEU VAL PRO GLU SER ALA HIS ARG ILE LYS GLU ASP GLY SEQRES 19 A 736 SER GLU GLU GLU VAL SER LEU ASP ASN VAL ALA VAL GLY SEQRES 20 A 736 ASP LEU LEU ARG VAL ARG PRO GLY GLU LYS ILE PRO VAL SEQRES 21 A 736 ASP GLY GLU VAL GLN GLU GLY ARG SER PHE VAL ASP GLU SEQRES 22 A 736 SER MET VAL THR GLY GLU PRO ILE PRO VAL ALA LYS GLU SEQRES 23 A 736 ALA SER ALA LYS VAL ILE GLY ALA THR ILE ASN GLN THR SEQRES 24 A 736 GLY SER PHE VAL MET LYS ALA LEU HIS VAL GLY SER ASP SEQRES 25 A 736 THR MET LEU ALA ARG ILE VAL GLN MET VAL SER ASP ALA SEQRES 26 A 736 GLN ARG SER ARG ALA PRO ILE GLN ARG LEU ALA ASP THR SEQRES 27 A 736 VAL SER GLY TRP PHE VAL PRO ALA VAL ILE LEU VAL ALA SEQRES 28 A 736 VAL LEU SER PHE ILE VAL TRP ALA LEU LEU GLY PRO GLN SEQRES 29 A 736 PRO ALA LEU SER TYR GLY LEU ILE ALA ALA VAL SER VAL SEQRES 30 A 736 LEU ILE ILE ALA CYS PRO CYS ALA LEU GLY LEU ALA THR SEQRES 31 A 736 PRO MET SER ILE MET VAL GLY VAL GLY LYS GLY ALA GLN SEQRES 32 A 736 SER GLY VAL LEU ILE LYS ASN ALA GLU ALA LEU GLU ARG SEQRES 33 A 736 MET GLU LYS VAL ASN THR LEU VAL VAL ASP LYS THR GLY SEQRES 34 A 736 THR LEU THR GLU GLY HIS PRO LYS LEU THR ARG ILE VAL SEQRES 35 A 736 THR ASP ASP PHE VAL GLU ASP ASN ALA LEU ALA LEU ALA SEQRES 36 A 736 ALA ALA LEU GLU HIS GLN SER GLU HIS PRO LEU ALA ASN SEQRES 37 A 736 ALA ILE VAL HIS ALA ALA LYS GLU LYS GLY LEU SER LEU SEQRES 38 A 736 GLY SER VAL GLU ALA PHE GLU ALA PRO THR GLY LYS GLY SEQRES 39 A 736 VAL VAL GLY GLN VAL ASP GLY HIS HIS VAL ALA ILE GLY SEQRES 40 A 736 ASN ALA ARG LEU MET GLN GLU HIS GLY GLY ASP ASN ALA SEQRES 41 A 736 PRO LEU PHE GLU LYS ALA ASP GLU LEU ARG GLY LYS GLY SEQRES 42 A 736 ALA SER VAL MET PHE MET ALA VAL ASP GLY LYS THR VAL SEQRES 43 A 736 ALA LEU LEU VAL VAL GLU ASP PRO ILE LYS SER SER THR SEQRES 44 A 736 PRO GLU THR ILE LEU GLU LEU GLN GLN SER GLY ILE GLU SEQRES 45 A 736 ILE VAL MET LEU THR GLY ASP SER LYS ARG THR ALA GLU SEQRES 46 A 736 ALA VAL ALA GLY THR LEU GLY ILE LYS LYS VAL VAL ALA SEQRES 47 A 736 GLU ILE MET PRO GLU ASP LYS SER ARG ILE VAL SER GLU SEQRES 48 A 736 LEU LYS ASP LYS GLY LEU ILE VAL ALA MET ALA GLY ASP SEQRES 49 A 736 GLY VAL ASN ASP ALA PRO ALA LEU ALA LYS ALA ASP ILE SEQRES 50 A 736 GLY ILE ALA MET GLY THR GLY THR ASP VAL ALA ILE GLU SEQRES 51 A 736 SER ALA GLY VAL THR LEU LEU HIS GLY ASP LEU ARG GLY SEQRES 52 A 736 ILE ALA LYS ALA ARG ARG LEU SER GLU SER THR MET SER SEQRES 53 A 736 ASN ILE ARG GLN ASN LEU PHE PHE ALA PHE ILE TYR ASN SEQRES 54 A 736 VAL LEU GLY VAL PRO LEU ALA ALA GLY VAL LEU TYR PRO SEQRES 55 A 736 LEU THR GLY LEU LEU LEU SER PRO MET ILE ALA ALA ALA SEQRES 56 A 736 ALA MET ALA LEU SER SER VAL SER VAL ILE ILE ASN ALA SEQRES 57 A 736 LEU ARG LEU LYS ARG VAL THR LEU HET ALF A 995 5 HET MG A 996 1 HET K A 997 1 HET 15P A1000 45 HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETSYN 15P PEG 1500 FORMUL 2 ALF AL F4 1- FORMUL 3 MG MG 2+ FORMUL 4 K K 1+ FORMUL 5 15P C69 H140 O35 FORMUL 6 HOH *37(H2 O) HELIX 1 1 GLU A 77 GLY A 101 1 25 HELIX 2 2 SER A 110 LEU A 127 1 18 HELIX 3 3 GLY A 130 LYS A 142 1 13 HELIX 4 4 ASN A 147 TRP A 169 1 23 HELIX 5 5 PRO A 170 PHE A 173 5 4 HELIX 6 6 PRO A 174 PHE A 177 5 4 HELIX 7 7 TYR A 187 ARG A 209 1 23 HELIX 8 8 THR A 313 ARG A 327 1 15 HELIX 9 9 ARG A 334 LEU A 361 1 28 HELIX 10 10 LEU A 367 ALA A 381 1 15 HELIX 11 11 ALA A 385 SER A 404 1 20 HELIX 12 12 GLU A 412 MET A 417 1 6 HELIX 13 13 GLU A 418 VAL A 420 5 3 HELIX 14 14 VAL A 447 HIS A 460 1 14 HELIX 15 15 HIS A 464 LYS A 477 1 14 HELIX 16 16 ARG A 510 GLU A 514 5 5 HELIX 17 17 ASN A 519 GLY A 531 1 13 HELIX 18 18 SER A 558 GLY A 570 1 13 HELIX 19 19 SER A 580 GLY A 592 1 13 HELIX 20 20 MET A 601 ASP A 614 1 14 HELIX 21 21 ASP A 628 ALA A 635 1 8 HELIX 22 22 THR A 645 ALA A 652 1 8 HELIX 23 23 HIS A 658 ASP A 660 5 3 HELIX 24 24 ILE A 664 LEU A 691 1 28 HELIX 25 25 LEU A 691 GLY A 698 1 8 HELIX 26 26 SER A 709 ARG A 730 1 22 HELIX 27 27 LEU A 731 ARG A 733 5 3 SHEET 1 AA 3 LYS A 290 VAL A 291 0 SHEET 2 AA 3 GLY A 262 GLU A 266 -1 O GLY A 262 N VAL A 291 SHEET 3 AA 3 VAL A 303 ALA A 306 -1 O VAL A 303 N GLN A 265 SHEET 1 AB 2 SER A 269 VAL A 271 0 SHEET 2 AB 2 VAL A 283 LYS A 285 -1 O VAL A 283 N VAL A 271 SHEET 1 AC 7 VAL A 406 ILE A 408 0 SHEET 2 AC 7 VAL A 654 LEU A 656 -1 O THR A 655 N LEU A 407 SHEET 3 AC 7 ILE A 637 MET A 641 1 O GLY A 638 N VAL A 654 SHEET 4 AC 7 VAL A 619 GLY A 623 1 O VAL A 619 N ILE A 637 SHEET 5 AC 7 THR A 422 VAL A 425 1 O THR A 422 N ALA A 620 SHEET 6 AC 7 GLU A 572 LEU A 576 1 O GLU A 572 N LEU A 423 SHEET 7 AC 7 LYS A 595 VAL A 597 1 O LYS A 595 N MET A 575 SHEET 1 AD 6 LYS A 437 THR A 443 0 SHEET 2 AD 6 LYS A 544 GLU A 552 -1 O LEU A 548 N VAL A 442 SHEET 3 AD 6 SER A 535 VAL A 541 -1 O SER A 535 N VAL A 551 SHEET 4 AD 6 HIS A 503 GLY A 507 -1 O ALA A 505 N ALA A 540 SHEET 5 AD 6 VAL A 495 VAL A 499 -1 O VAL A 495 N ILE A 506 SHEET 6 AD 6 VAL A 484 PHE A 487 -1 N GLU A 485 O GLN A 498 LINK OD2 ASP A 426 MG MG A 996 1555 1555 2.13 LINK O THR A 428 MG MG A 996 1555 1555 2.18 LINK OD1 ASP A 624 MG MG A 996 1555 1555 2.14 LINK AL ALF A 995 MG MG A 996 1555 1555 3.12 LINK AL ALF A 995 O HOH A2014 1555 1555 2.39 LINK MG MG A 996 O HOH A2015 1555 1555 2.16 LINK MG MG A 996 O HOH A2021 1555 1555 2.03 CISPEP 1 GLY A 102 HIS A 103 0 1.05 CISPEP 2 HIS A 103 GLY A 104 0 1.30 CISPEP 3 GLY A 129 GLY A 130 0 2.46 CISPEP 4 GLN A 364 PRO A 365 0 -7.26 CISPEP 5 VAL A 499 ASP A 500 0 -11.14 CISPEP 6 ARG A 662 GLY A 663 0 6.80 CISPEP 7 TYR A 701 PRO A 702 0 2.12 CISPEP 8 THR A 735 LEU A 736 0 21.88 SITE 1 AC1 13 ASP A 426 LYS A 427 THR A 428 THR A 577 SITE 2 AC1 13 GLY A 578 LYS A 605 ASP A 624 ASN A 627 SITE 3 AC1 13 ASP A 628 MG A 996 HOH A2014 HOH A2015 SITE 4 AC1 13 HOH A2021 SITE 1 AC2 6 ASP A 426 THR A 428 ASP A 624 ALF A 995 SITE 2 AC2 6 HOH A2015 HOH A2021 SITE 1 AC3 2 MET A 100 MET A 711 SITE 1 AC4 14 PHE A 108 SER A 110 ASN A 112 TRP A 116 SITE 2 AC4 14 LEU A 120 LEU A 168 SER A 676 GLN A 680 SITE 3 AC4 14 PHE A 683 TYR A 688 SER A 723 ILE A 726 SITE 4 AC4 14 ASN A 727 ARG A 730 CRYST1 44.120 72.910 329.650 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003034 0.00000