data_4BYR # _entry.id 4BYR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4BYR PDBE EBI-57752 WWPDB D_1290057752 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2014-12-10 _pdbx_database_PDB_obs_spr.pdb_id 4V8Y _pdbx_database_PDB_obs_spr.replace_pdb_id 4BYR _pdbx_database_PDB_obs_spr.details ;THIS ENTRY WITH OTHER SPLIT ENTRIES HAVE BEEN CONSOLIDATED INTO A COMBINED FILE FOR COMPLETE REPRESENTATION. NO COORDINATES HAVE BEEN CHANGED. ; # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4BYL split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYN split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYO split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYP split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYQ split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYR split . PDB 4BYS split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' EMDB EMD-2421 'associated EM volume' 'MOLECULAR ARCHITECTURE OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYT unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYU unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYV unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYW unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYX unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4BYR _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-07-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fernandez, I.S.' 1 'Bai, X.C.' 2 'Hussain, T.' 3 'Kelley, A.C.' 4 'Lorsch, J.R.' 5 'Ramakrishnan, V.' 6 'Scheres, S.H.W.' 7 # _citation.id primary _citation.title 'Molecular Architecture of a Eukaryotic Translational Initiation Complex.' _citation.journal_abbrev Science _citation.journal_volume 342 _citation.page_first 40585 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24200810 _citation.pdbx_database_id_DOI 10.1126/SCIENCE.1240585 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fernandez, I.S.' 1 primary 'Bai, X.C.' 2 primary 'Hussain, T.' 3 primary 'Kelley, A.C.' 4 primary 'Lorsch, J.R.' 5 primary 'Ramakrishnan, V.' 6 primary 'Scheres, S.H.' 7 # _cell.entry_id 4BYR _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BYR _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'EUKARYOTIC TRANSLATION INITIATION FACTOR 5B' 37777.656 1 ? ? 'DOMAIN 1 AND 2, RESIDUES 401-739' ? 2 non-polymer syn 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 521.208 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EIF-5B, TRANSLATION INITIATION FACTOR IF-2, INITIATION FACTOR EIF5B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;KDLRSPICCILG(HSO)VDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVID TPG(HSO)ESFSNLRSRGSSLCNIAILVIDIM(HSO)GLEQQTIESIKLLRDRKAPFVVALNKIDRLYDWKAIPNNSFRD SFAKQSRAVQEEFQSRYSKIQLELAEQGLNSELYFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLS (HSO)VEATILEVKVVEGFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPLRELRLKSEYV(HSO)(HSO) KEVKAALGVKIAANDLEKAVSGSRLLVVGPEDDEDELMDDVMD ; _entity_poly.pdbx_seq_one_letter_code_can ;KDLRSPICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIGATYFPIDAIKAKTKVMAEYEKQTFDVPGLLVIDTPGH ESFSNLRSRGSSLCNIAILVIDIMHGLEQQTIESIKLLRDRKAPFVVALNKIDRLYDWKAIPNNSFRDSFAKQSRAVQEE FQSRYSKIQLELAEQGLNSELYFQNKNMSKYVSIVPTSAVTGEGVPDLLWLLLELTQKRMSKQLMYLSHVEATILEVKVV EGFGTTIDVILSNGYLREGDRIVLCGMNGPIVTNIRALLTPQPLRELRLKSEYVHHKEVKAALGVKIAANDLEKAVSGSR LLVVGPEDDEDELMDDVMD ; _entity_poly.pdbx_strand_id P _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ASP n 1 3 LEU n 1 4 ARG n 1 5 SER n 1 6 PRO n 1 7 ILE n 1 8 CYS n 1 9 CYS n 1 10 ILE n 1 11 LEU n 1 12 GLY n 1 13 HSO n 1 14 VAL n 1 15 ASP n 1 16 THR n 1 17 GLY n 1 18 LYS n 1 19 THR n 1 20 LYS n 1 21 LEU n 1 22 LEU n 1 23 ASP n 1 24 LYS n 1 25 ILE n 1 26 ARG n 1 27 GLN n 1 28 THR n 1 29 ASN n 1 30 VAL n 1 31 GLN n 1 32 GLY n 1 33 GLY n 1 34 GLU n 1 35 ALA n 1 36 GLY n 1 37 GLY n 1 38 ILE n 1 39 THR n 1 40 GLN n 1 41 GLN n 1 42 ILE n 1 43 GLY n 1 44 ALA n 1 45 THR n 1 46 TYR n 1 47 PHE n 1 48 PRO n 1 49 ILE n 1 50 ASP n 1 51 ALA n 1 52 ILE n 1 53 LYS n 1 54 ALA n 1 55 LYS n 1 56 THR n 1 57 LYS n 1 58 VAL n 1 59 MET n 1 60 ALA n 1 61 GLU n 1 62 TYR n 1 63 GLU n 1 64 LYS n 1 65 GLN n 1 66 THR n 1 67 PHE n 1 68 ASP n 1 69 VAL n 1 70 PRO n 1 71 GLY n 1 72 LEU n 1 73 LEU n 1 74 VAL n 1 75 ILE n 1 76 ASP n 1 77 THR n 1 78 PRO n 1 79 GLY n 1 80 HSO n 1 81 GLU n 1 82 SER n 1 83 PHE n 1 84 SER n 1 85 ASN n 1 86 LEU n 1 87 ARG n 1 88 SER n 1 89 ARG n 1 90 GLY n 1 91 SER n 1 92 SER n 1 93 LEU n 1 94 CYS n 1 95 ASN n 1 96 ILE n 1 97 ALA n 1 98 ILE n 1 99 LEU n 1 100 VAL n 1 101 ILE n 1 102 ASP n 1 103 ILE n 1 104 MET n 1 105 HSO n 1 106 GLY n 1 107 LEU n 1 108 GLU n 1 109 GLN n 1 110 GLN n 1 111 THR n 1 112 ILE n 1 113 GLU n 1 114 SER n 1 115 ILE n 1 116 LYS n 1 117 LEU n 1 118 LEU n 1 119 ARG n 1 120 ASP n 1 121 ARG n 1 122 LYS n 1 123 ALA n 1 124 PRO n 1 125 PHE n 1 126 VAL n 1 127 VAL n 1 128 ALA n 1 129 LEU n 1 130 ASN n 1 131 LYS n 1 132 ILE n 1 133 ASP n 1 134 ARG n 1 135 LEU n 1 136 TYR n 1 137 ASP n 1 138 TRP n 1 139 LYS n 1 140 ALA n 1 141 ILE n 1 142 PRO n 1 143 ASN n 1 144 ASN n 1 145 SER n 1 146 PHE n 1 147 ARG n 1 148 ASP n 1 149 SER n 1 150 PHE n 1 151 ALA n 1 152 LYS n 1 153 GLN n 1 154 SER n 1 155 ARG n 1 156 ALA n 1 157 VAL n 1 158 GLN n 1 159 GLU n 1 160 GLU n 1 161 PHE n 1 162 GLN n 1 163 SER n 1 164 ARG n 1 165 TYR n 1 166 SER n 1 167 LYS n 1 168 ILE n 1 169 GLN n 1 170 LEU n 1 171 GLU n 1 172 LEU n 1 173 ALA n 1 174 GLU n 1 175 GLN n 1 176 GLY n 1 177 LEU n 1 178 ASN n 1 179 SER n 1 180 GLU n 1 181 LEU n 1 182 TYR n 1 183 PHE n 1 184 GLN n 1 185 ASN n 1 186 LYS n 1 187 ASN n 1 188 MET n 1 189 SER n 1 190 LYS n 1 191 TYR n 1 192 VAL n 1 193 SER n 1 194 ILE n 1 195 VAL n 1 196 PRO n 1 197 THR n 1 198 SER n 1 199 ALA n 1 200 VAL n 1 201 THR n 1 202 GLY n 1 203 GLU n 1 204 GLY n 1 205 VAL n 1 206 PRO n 1 207 ASP n 1 208 LEU n 1 209 LEU n 1 210 TRP n 1 211 LEU n 1 212 LEU n 1 213 LEU n 1 214 GLU n 1 215 LEU n 1 216 THR n 1 217 GLN n 1 218 LYS n 1 219 ARG n 1 220 MET n 1 221 SER n 1 222 LYS n 1 223 GLN n 1 224 LEU n 1 225 MET n 1 226 TYR n 1 227 LEU n 1 228 SER n 1 229 HSO n 1 230 VAL n 1 231 GLU n 1 232 ALA n 1 233 THR n 1 234 ILE n 1 235 LEU n 1 236 GLU n 1 237 VAL n 1 238 LYS n 1 239 VAL n 1 240 VAL n 1 241 GLU n 1 242 GLY n 1 243 PHE n 1 244 GLY n 1 245 THR n 1 246 THR n 1 247 ILE n 1 248 ASP n 1 249 VAL n 1 250 ILE n 1 251 LEU n 1 252 SER n 1 253 ASN n 1 254 GLY n 1 255 TYR n 1 256 LEU n 1 257 ARG n 1 258 GLU n 1 259 GLY n 1 260 ASP n 1 261 ARG n 1 262 ILE n 1 263 VAL n 1 264 LEU n 1 265 CYS n 1 266 GLY n 1 267 MET n 1 268 ASN n 1 269 GLY n 1 270 PRO n 1 271 ILE n 1 272 VAL n 1 273 THR n 1 274 ASN n 1 275 ILE n 1 276 ARG n 1 277 ALA n 1 278 LEU n 1 279 LEU n 1 280 THR n 1 281 PRO n 1 282 GLN n 1 283 PRO n 1 284 LEU n 1 285 ARG n 1 286 GLU n 1 287 LEU n 1 288 ARG n 1 289 LEU n 1 290 LYS n 1 291 SER n 1 292 GLU n 1 293 TYR n 1 294 VAL n 1 295 HSO n 1 296 HSO n 1 297 LYS n 1 298 GLU n 1 299 VAL n 1 300 LYS n 1 301 ALA n 1 302 ALA n 1 303 LEU n 1 304 GLY n 1 305 VAL n 1 306 LYS n 1 307 ILE n 1 308 ALA n 1 309 ALA n 1 310 ASN n 1 311 ASP n 1 312 LEU n 1 313 GLU n 1 314 LYS n 1 315 ALA n 1 316 VAL n 1 317 SER n 1 318 GLY n 1 319 SER n 1 320 ARG n 1 321 LEU n 1 322 LEU n 1 323 VAL n 1 324 VAL n 1 325 GLY n 1 326 PRO n 1 327 GLU n 1 328 ASP n 1 329 ASP n 1 330 GLU n 1 331 ASP n 1 332 GLU n 1 333 LEU n 1 334 MET n 1 335 ASP n 1 336 ASP n 1 337 VAL n 1 338 MET n 1 339 ASP n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;BAKER'S YEAST ; _entity_src_nat.pdbx_organism_scientific 'SACCHAROMYCES CEREVISIAE' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IF2P_YEAST _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P39730 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4BYR _struct_ref_seq.pdbx_strand_id P _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 339 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P39730 _struct_ref_seq.db_align_beg 401 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 739 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 339 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GCP non-polymer . 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' ? 'C11 H18 N5 O13 P3' 521.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HSO 'L-peptide linking' n L-histidinol ? 'C6 H12 N3 O 1' 142.179 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4BYR _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4BYR _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 4.30 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2655 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2687 _refine_hist.d_res_high 4.30 _refine_hist.d_res_low . # _struct.entry_id 4BYR _struct.title 'Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex' _struct.pdbx_descriptor 'EUKARYOTIC TRANSLATION INITIATION FACTOR 5B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BYR _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'RIBOSOME, RIBOSOME INITIATION COMPLEX, SINGLE PARTICLE ANALYSIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 20 ? GLN A 31 ? LYS P 20 GLN P 31 1 ? 12 HELX_P HELX_P2 2 PRO A 48 ? LYS A 55 ? PRO P 48 LYS P 55 1 ? 8 HELX_P HELX_P3 3 GLN A 110 ? LYS A 122 ? GLN P 110 LYS P 122 1 ? 13 HELX_P HELX_P4 4 SER A 145 ? GLN A 153 ? SER P 145 GLN P 153 1 ? 9 HELX_P HELX_P5 5 SER A 154 ? LEU A 177 ? SER P 154 LEU P 177 1 ? 24 HELX_P HELX_P6 6 GLY A 204 ? MET A 220 ? GLY P 204 MET P 220 1 ? 17 HELX_P HELX_P7 7 SER A 221 ? LEU A 224 ? SER P 221 LEU P 224 5 ? 4 HELX_P HELX_P8 8 GLY A 325 ? ASP A 339 ? GLY P 325 ASP P 339 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 12 C ? ? ? 1_555 A HSO 13 N ? ? P GLY 12 P HSO 13 1_555 ? ? ? ? ? ? ? 1.360 ? covale2 covale ? ? A HSO 13 C ? ? ? 1_555 A VAL 14 N ? ? P HSO 13 P VAL 14 1_555 ? ? ? ? ? ? ? 1.339 ? covale3 covale ? ? A GLY 79 C ? ? ? 1_555 A HSO 80 N ? ? P GLY 79 P HSO 80 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A HSO 80 C ? ? ? 1_555 A GLU 81 N ? ? P HSO 80 P GLU 81 1_555 ? ? ? ? ? ? ? 1.352 ? covale5 covale ? ? A MET 104 C ? ? ? 1_555 A HSO 105 N ? ? P MET 104 P HSO 105 1_555 ? ? ? ? ? ? ? 1.349 ? covale6 covale ? ? A HSO 105 C ? ? ? 1_555 A GLY 106 N ? ? P HSO 105 P GLY 106 1_555 ? ? ? ? ? ? ? 1.344 ? covale7 covale ? ? A SER 228 C ? ? ? 1_555 A HSO 229 N ? ? P SER 228 P HSO 229 1_555 ? ? ? ? ? ? ? 1.337 ? covale8 covale ? ? A HSO 229 C ? ? ? 1_555 A VAL 230 N ? ? P HSO 229 P VAL 230 1_555 ? ? ? ? ? ? ? 1.348 ? covale9 covale ? ? A VAL 294 C ? ? ? 1_555 A HSO 295 N ? ? P VAL 294 P HSO 295 1_555 ? ? ? ? ? ? ? 1.338 ? covale10 covale ? ? A HSO 295 C ? ? ? 1_555 A HSO 296 N ? ? P HSO 295 P HSO 296 1_555 ? ? ? ? ? ? ? 1.346 ? covale11 covale ? ? A HSO 296 C ? ? ? 1_555 A LYS 297 N ? ? P HSO 296 P LYS 297 1_555 ? ? ? ? ? ? ? 1.347 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 72 A . ? LEU 72 P LEU 73 A ? LEU 73 P 1 -8.87 2 HSO 80 A . ? HSO 80 P GLU 81 A ? GLU 81 P 1 3.96 3 GLU 81 A . ? GLU 81 P SER 82 A ? SER 82 P 1 1.09 4 PHE 83 A . ? PHE 83 P SER 84 A ? SER 84 P 1 1.36 5 LEU 93 A . ? LEU 93 P CYS 94 A ? CYS 94 P 1 -1.39 6 THR 280 A . ? THR 280 P PRO 281 A ? PRO 281 P 1 7.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details PA ? 7 ? PB ? 7 ? PC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense PA 1 2 ? anti-parallel PA 2 3 ? parallel PA 3 4 ? parallel PA 4 5 ? parallel PA 5 6 ? parallel PA 6 7 ? parallel PB 1 2 ? anti-parallel PB 2 3 ? anti-parallel PB 3 4 ? anti-parallel PB 4 5 ? anti-parallel PB 5 6 ? anti-parallel PB 6 7 ? anti-parallel PC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id PA 1 ALA A 44 ? TYR A 46 ? ALA P 44 TYR P 46 PA 2 LEU A 73 ? ASP A 76 ? LEU P 73 ASP P 76 PA 3 CYS A 8 ? LEU A 11 ? CYS P 8 LEU P 11 PA 4 ILE A 96 ? LEU A 99 ? ILE P 96 LEU P 99 PA 5 VAL A 126 ? LEU A 129 ? VAL P 126 LEU P 129 PA 6 VAL A 192 ? PRO A 196 ? VAL P 192 PRO P 196 PA 7 SER A 179 ? LEU A 181 ? SER P 179 LEU P 181 PB 1 GLU A 231 ? VAL A 239 ? GLU P 231 VAL P 239 PB 2 THR A 245 ? ASN A 253 ? THR P 245 ASN P 253 PB 3 LEU A 303 ? ALA A 309 ? LEU P 303 ALA P 309 PB 4 PRO A 270 ? LEU A 279 ? PRO P 270 LEU P 279 PB 5 ARG A 261 ? CYS A 265 ? ARG P 261 CYS P 265 PB 6 ARG A 320 ? VAL A 323 ? ARG P 320 VAL P 323 PB 7 GLU A 231 ? VAL A 239 ? GLU P 231 VAL P 239 PC 1 TYR A 255 ? ARG A 257 ? TYR P 255 ARG P 257 PC 2 GLU A 298 ? LYS A 300 ? GLU P 298 LYS P 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id PA 1 2 N THR A 45 ? N THR P 45 O VAL A 74 ? O VAL P 74 PA 2 3 N ILE A 75 ? N ILE P 75 O CYS A 8 ? O CYS P 8 PA 3 4 N CYS A 9 ? N CYS P 9 O ILE A 96 ? O ILE P 96 PA 4 5 N LEU A 99 ? N LEU P 99 O VAL A 126 ? O VAL P 126 PA 5 6 N VAL A 127 ? N VAL P 127 O SER A 193 ? O SER P 193 PA 6 7 N ILE A 194 ? N ILE P 194 O GLU A 180 ? O GLU P 180 PB 1 2 N LYS A 238 ? N LYS P 238 O THR A 246 ? O THR P 246 PB 2 3 N LEU A 251 ? N LEU P 251 O LEU A 303 ? O LEU P 303 PB 3 4 O ALA A 308 ? O ALA P 308 N ARG A 276 ? N ARG P 276 PB 4 5 N THR A 273 ? N THR P 273 O ILE A 262 ? O ILE P 262 PB 5 6 N VAL A 263 ? N VAL P 263 O LEU A 322 ? O LEU P 322 PB 6 7 N LEU A 321 ? N LEU P 321 O ALA A 232 ? O ALA P 232 PC 1 2 N LEU A 256 ? N LEU P 256 O VAL A 299 ? O VAL P 299 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'BINDING SITE FOR RESIDUE GCP P 1340' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 THR A 16 ? THR P 16 . ? 1_555 ? 2 AC1 12 GLY A 17 ? GLY P 17 . ? 1_555 ? 3 AC1 12 LYS A 18 ? LYS P 18 . ? 1_555 ? 4 AC1 12 THR A 19 ? THR P 19 . ? 1_555 ? 5 AC1 12 LYS A 20 ? LYS P 20 . ? 1_555 ? 6 AC1 12 ASP A 23 ? ASP P 23 . ? 1_555 ? 7 AC1 12 PRO A 78 ? PRO P 78 . ? 1_555 ? 8 AC1 12 GLY A 79 ? GLY P 79 . ? 1_555 ? 9 AC1 12 LYS A 131 ? LYS P 131 . ? 1_555 ? 10 AC1 12 SER A 198 ? SER P 198 . ? 1_555 ? 11 AC1 12 ALA A 199 ? ALA P 199 . ? 1_555 ? 12 AC1 12 VAL A 200 ? VAL P 200 . ? 1_555 ? # _database_PDB_matrix.entry_id 4BYR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BYR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS P . n A 1 2 ASP 2 2 2 ASP ASP P . n A 1 3 LEU 3 3 3 LEU LEU P . n A 1 4 ARG 4 4 4 ARG ARG P . n A 1 5 SER 5 5 5 SER SER P . n A 1 6 PRO 6 6 6 PRO PRO P . n A 1 7 ILE 7 7 7 ILE ILE P . n A 1 8 CYS 8 8 8 CYS CYS P . n A 1 9 CYS 9 9 9 CYS CYS P . n A 1 10 ILE 10 10 10 ILE ILE P . n A 1 11 LEU 11 11 11 LEU LEU P . n A 1 12 GLY 12 12 12 GLY GLY P . n A 1 13 HSO 13 13 13 HSO HSO P . n A 1 14 VAL 14 14 14 VAL VAL P . n A 1 15 ASP 15 15 15 ASP ASP P . n A 1 16 THR 16 16 16 THR THR P . n A 1 17 GLY 17 17 17 GLY GLY P . n A 1 18 LYS 18 18 18 LYS LYS P . n A 1 19 THR 19 19 19 THR THR P . n A 1 20 LYS 20 20 20 LYS LYS P . n A 1 21 LEU 21 21 21 LEU LEU P . n A 1 22 LEU 22 22 22 LEU LEU P . n A 1 23 ASP 23 23 23 ASP ASP P . n A 1 24 LYS 24 24 24 LYS LYS P . n A 1 25 ILE 25 25 25 ILE ILE P . n A 1 26 ARG 26 26 26 ARG ARG P . n A 1 27 GLN 27 27 27 GLN GLN P . n A 1 28 THR 28 28 28 THR THR P . n A 1 29 ASN 29 29 29 ASN ASN P . n A 1 30 VAL 30 30 30 VAL VAL P . n A 1 31 GLN 31 31 31 GLN GLN P . n A 1 32 GLY 32 32 32 GLY GLY P . n A 1 33 GLY 33 33 33 GLY GLY P . n A 1 34 GLU 34 34 34 GLU GLU P . n A 1 35 ALA 35 35 35 ALA ALA P . n A 1 36 GLY 36 36 36 GLY GLY P . n A 1 37 GLY 37 37 37 GLY GLY P . n A 1 38 ILE 38 38 38 ILE ILE P . n A 1 39 THR 39 39 39 THR THR P . n A 1 40 GLN 40 40 40 GLN GLN P . n A 1 41 GLN 41 41 41 GLN GLN P . n A 1 42 ILE 42 42 42 ILE ILE P . n A 1 43 GLY 43 43 43 GLY GLY P . n A 1 44 ALA 44 44 44 ALA ALA P . n A 1 45 THR 45 45 45 THR THR P . n A 1 46 TYR 46 46 46 TYR TYR P . n A 1 47 PHE 47 47 47 PHE PHE P . n A 1 48 PRO 48 48 48 PRO PRO P . n A 1 49 ILE 49 49 49 ILE ILE P . n A 1 50 ASP 50 50 50 ASP ASP P . n A 1 51 ALA 51 51 51 ALA ALA P . n A 1 52 ILE 52 52 52 ILE ILE P . n A 1 53 LYS 53 53 53 LYS LYS P . n A 1 54 ALA 54 54 54 ALA ALA P . n A 1 55 LYS 55 55 55 LYS LYS P . n A 1 56 THR 56 56 56 THR THR P . n A 1 57 LYS 57 57 57 LYS LYS P . n A 1 58 VAL 58 58 58 VAL VAL P . n A 1 59 MET 59 59 59 MET MET P . n A 1 60 ALA 60 60 60 ALA ALA P . n A 1 61 GLU 61 61 61 GLU GLU P . n A 1 62 TYR 62 62 62 TYR TYR P . n A 1 63 GLU 63 63 63 GLU GLU P . n A 1 64 LYS 64 64 64 LYS LYS P . n A 1 65 GLN 65 65 65 GLN GLN P . n A 1 66 THR 66 66 66 THR THR P . n A 1 67 PHE 67 67 67 PHE PHE P . n A 1 68 ASP 68 68 68 ASP ASP P . n A 1 69 VAL 69 69 69 VAL VAL P . n A 1 70 PRO 70 70 70 PRO PRO P . n A 1 71 GLY 71 71 71 GLY GLY P . n A 1 72 LEU 72 72 72 LEU LEU P . n A 1 73 LEU 73 73 73 LEU LEU P . n A 1 74 VAL 74 74 74 VAL VAL P . n A 1 75 ILE 75 75 75 ILE ILE P . n A 1 76 ASP 76 76 76 ASP ASP P . n A 1 77 THR 77 77 77 THR THR P . n A 1 78 PRO 78 78 78 PRO PRO P . n A 1 79 GLY 79 79 79 GLY GLY P . n A 1 80 HSO 80 80 80 HSO HSO P . n A 1 81 GLU 81 81 81 GLU GLU P . n A 1 82 SER 82 82 82 SER SER P . n A 1 83 PHE 83 83 83 PHE PHE P . n A 1 84 SER 84 84 84 SER SER P . n A 1 85 ASN 85 85 85 ASN ASN P . n A 1 86 LEU 86 86 86 LEU LEU P . n A 1 87 ARG 87 87 87 ARG ARG P . n A 1 88 SER 88 88 88 SER SER P . n A 1 89 ARG 89 89 89 ARG ARG P . n A 1 90 GLY 90 90 90 GLY GLY P . n A 1 91 SER 91 91 91 SER SER P . n A 1 92 SER 92 92 92 SER SER P . n A 1 93 LEU 93 93 93 LEU LEU P . n A 1 94 CYS 94 94 94 CYS CYS P . n A 1 95 ASN 95 95 95 ASN ASN P . n A 1 96 ILE 96 96 96 ILE ILE P . n A 1 97 ALA 97 97 97 ALA ALA P . n A 1 98 ILE 98 98 98 ILE ILE P . n A 1 99 LEU 99 99 99 LEU LEU P . n A 1 100 VAL 100 100 100 VAL VAL P . n A 1 101 ILE 101 101 101 ILE ILE P . n A 1 102 ASP 102 102 102 ASP ASP P . n A 1 103 ILE 103 103 103 ILE ILE P . n A 1 104 MET 104 104 104 MET MET P . n A 1 105 HSO 105 105 105 HSO HSO P . n A 1 106 GLY 106 106 106 GLY GLY P . n A 1 107 LEU 107 107 107 LEU LEU P . n A 1 108 GLU 108 108 108 GLU GLU P . n A 1 109 GLN 109 109 109 GLN GLN P . n A 1 110 GLN 110 110 110 GLN GLN P . n A 1 111 THR 111 111 111 THR THR P . n A 1 112 ILE 112 112 112 ILE ILE P . n A 1 113 GLU 113 113 113 GLU GLU P . n A 1 114 SER 114 114 114 SER SER P . n A 1 115 ILE 115 115 115 ILE ILE P . n A 1 116 LYS 116 116 116 LYS LYS P . n A 1 117 LEU 117 117 117 LEU LEU P . n A 1 118 LEU 118 118 118 LEU LEU P . n A 1 119 ARG 119 119 119 ARG ARG P . n A 1 120 ASP 120 120 120 ASP ASP P . n A 1 121 ARG 121 121 121 ARG ARG P . n A 1 122 LYS 122 122 122 LYS LYS P . n A 1 123 ALA 123 123 123 ALA ALA P . n A 1 124 PRO 124 124 124 PRO PRO P . n A 1 125 PHE 125 125 125 PHE PHE P . n A 1 126 VAL 126 126 126 VAL VAL P . n A 1 127 VAL 127 127 127 VAL VAL P . n A 1 128 ALA 128 128 128 ALA ALA P . n A 1 129 LEU 129 129 129 LEU LEU P . n A 1 130 ASN 130 130 130 ASN ASN P . n A 1 131 LYS 131 131 131 LYS LYS P . n A 1 132 ILE 132 132 132 ILE ILE P . n A 1 133 ASP 133 133 133 ASP ASP P . n A 1 134 ARG 134 134 134 ARG ARG P . n A 1 135 LEU 135 135 135 LEU LEU P . n A 1 136 TYR 136 136 136 TYR TYR P . n A 1 137 ASP 137 137 137 ASP ASP P . n A 1 138 TRP 138 138 138 TRP TRP P . n A 1 139 LYS 139 139 139 LYS LYS P . n A 1 140 ALA 140 140 140 ALA ALA P . n A 1 141 ILE 141 141 141 ILE ILE P . n A 1 142 PRO 142 142 142 PRO PRO P . n A 1 143 ASN 143 143 143 ASN ASN P . n A 1 144 ASN 144 144 144 ASN ASN P . n A 1 145 SER 145 145 145 SER SER P . n A 1 146 PHE 146 146 146 PHE PHE P . n A 1 147 ARG 147 147 147 ARG ARG P . n A 1 148 ASP 148 148 148 ASP ASP P . n A 1 149 SER 149 149 149 SER SER P . n A 1 150 PHE 150 150 150 PHE PHE P . n A 1 151 ALA 151 151 151 ALA ALA P . n A 1 152 LYS 152 152 152 LYS LYS P . n A 1 153 GLN 153 153 153 GLN GLN P . n A 1 154 SER 154 154 154 SER SER P . n A 1 155 ARG 155 155 155 ARG ARG P . n A 1 156 ALA 156 156 156 ALA ALA P . n A 1 157 VAL 157 157 157 VAL VAL P . n A 1 158 GLN 158 158 158 GLN GLN P . n A 1 159 GLU 159 159 159 GLU GLU P . n A 1 160 GLU 160 160 160 GLU GLU P . n A 1 161 PHE 161 161 161 PHE PHE P . n A 1 162 GLN 162 162 162 GLN GLN P . n A 1 163 SER 163 163 163 SER SER P . n A 1 164 ARG 164 164 164 ARG ARG P . n A 1 165 TYR 165 165 165 TYR TYR P . n A 1 166 SER 166 166 166 SER SER P . n A 1 167 LYS 167 167 167 LYS LYS P . n A 1 168 ILE 168 168 168 ILE ILE P . n A 1 169 GLN 169 169 169 GLN GLN P . n A 1 170 LEU 170 170 170 LEU LEU P . n A 1 171 GLU 171 171 171 GLU GLU P . n A 1 172 LEU 172 172 172 LEU LEU P . n A 1 173 ALA 173 173 173 ALA ALA P . n A 1 174 GLU 174 174 174 GLU GLU P . n A 1 175 GLN 175 175 175 GLN GLN P . n A 1 176 GLY 176 176 176 GLY GLY P . n A 1 177 LEU 177 177 177 LEU LEU P . n A 1 178 ASN 178 178 178 ASN ASN P . n A 1 179 SER 179 179 179 SER SER P . n A 1 180 GLU 180 180 180 GLU GLU P . n A 1 181 LEU 181 181 181 LEU LEU P . n A 1 182 TYR 182 182 182 TYR TYR P . n A 1 183 PHE 183 183 183 PHE PHE P . n A 1 184 GLN 184 184 184 GLN GLN P . n A 1 185 ASN 185 185 185 ASN ASN P . n A 1 186 LYS 186 186 186 LYS LYS P . n A 1 187 ASN 187 187 187 ASN ASN P . n A 1 188 MET 188 188 188 MET MET P . n A 1 189 SER 189 189 189 SER SER P . n A 1 190 LYS 190 190 190 LYS LYS P . n A 1 191 TYR 191 191 191 TYR TYR P . n A 1 192 VAL 192 192 192 VAL VAL P . n A 1 193 SER 193 193 193 SER SER P . n A 1 194 ILE 194 194 194 ILE ILE P . n A 1 195 VAL 195 195 195 VAL VAL P . n A 1 196 PRO 196 196 196 PRO PRO P . n A 1 197 THR 197 197 197 THR THR P . n A 1 198 SER 198 198 198 SER SER P . n A 1 199 ALA 199 199 199 ALA ALA P . n A 1 200 VAL 200 200 200 VAL VAL P . n A 1 201 THR 201 201 201 THR THR P . n A 1 202 GLY 202 202 202 GLY GLY P . n A 1 203 GLU 203 203 203 GLU GLU P . n A 1 204 GLY 204 204 204 GLY GLY P . n A 1 205 VAL 205 205 205 VAL VAL P . n A 1 206 PRO 206 206 206 PRO PRO P . n A 1 207 ASP 207 207 207 ASP ASP P . n A 1 208 LEU 208 208 208 LEU LEU P . n A 1 209 LEU 209 209 209 LEU LEU P . n A 1 210 TRP 210 210 210 TRP TRP P . n A 1 211 LEU 211 211 211 LEU LEU P . n A 1 212 LEU 212 212 212 LEU LEU P . n A 1 213 LEU 213 213 213 LEU LEU P . n A 1 214 GLU 214 214 214 GLU GLU P . n A 1 215 LEU 215 215 215 LEU LEU P . n A 1 216 THR 216 216 216 THR THR P . n A 1 217 GLN 217 217 217 GLN GLN P . n A 1 218 LYS 218 218 218 LYS LYS P . n A 1 219 ARG 219 219 219 ARG ARG P . n A 1 220 MET 220 220 220 MET MET P . n A 1 221 SER 221 221 221 SER SER P . n A 1 222 LYS 222 222 222 LYS LYS P . n A 1 223 GLN 223 223 223 GLN GLN P . n A 1 224 LEU 224 224 224 LEU LEU P . n A 1 225 MET 225 225 225 MET MET P . n A 1 226 TYR 226 226 226 TYR TYR P . n A 1 227 LEU 227 227 227 LEU LEU P . n A 1 228 SER 228 228 228 SER SER P . n A 1 229 HSO 229 229 229 HSO HSO P . n A 1 230 VAL 230 230 230 VAL VAL P . n A 1 231 GLU 231 231 231 GLU GLU P . n A 1 232 ALA 232 232 232 ALA ALA P . n A 1 233 THR 233 233 233 THR THR P . n A 1 234 ILE 234 234 234 ILE ILE P . n A 1 235 LEU 235 235 235 LEU LEU P . n A 1 236 GLU 236 236 236 GLU GLU P . n A 1 237 VAL 237 237 237 VAL VAL P . n A 1 238 LYS 238 238 238 LYS LYS P . n A 1 239 VAL 239 239 239 VAL VAL P . n A 1 240 VAL 240 240 240 VAL VAL P . n A 1 241 GLU 241 241 241 GLU GLU P . n A 1 242 GLY 242 242 242 GLY GLY P . n A 1 243 PHE 243 243 243 PHE PHE P . n A 1 244 GLY 244 244 244 GLY GLY P . n A 1 245 THR 245 245 245 THR THR P . n A 1 246 THR 246 246 246 THR THR P . n A 1 247 ILE 247 247 247 ILE ILE P . n A 1 248 ASP 248 248 248 ASP ASP P . n A 1 249 VAL 249 249 249 VAL VAL P . n A 1 250 ILE 250 250 250 ILE ILE P . n A 1 251 LEU 251 251 251 LEU LEU P . n A 1 252 SER 252 252 252 SER SER P . n A 1 253 ASN 253 253 253 ASN ASN P . n A 1 254 GLY 254 254 254 GLY GLY P . n A 1 255 TYR 255 255 255 TYR TYR P . n A 1 256 LEU 256 256 256 LEU LEU P . n A 1 257 ARG 257 257 257 ARG ARG P . n A 1 258 GLU 258 258 258 GLU GLU P . n A 1 259 GLY 259 259 259 GLY GLY P . n A 1 260 ASP 260 260 260 ASP ASP P . n A 1 261 ARG 261 261 261 ARG ARG P . n A 1 262 ILE 262 262 262 ILE ILE P . n A 1 263 VAL 263 263 263 VAL VAL P . n A 1 264 LEU 264 264 264 LEU LEU P . n A 1 265 CYS 265 265 265 CYS CYS P . n A 1 266 GLY 266 266 266 GLY GLY P . n A 1 267 MET 267 267 267 MET MET P . n A 1 268 ASN 268 268 268 ASN ASN P . n A 1 269 GLY 269 269 269 GLY GLY P . n A 1 270 PRO 270 270 270 PRO PRO P . n A 1 271 ILE 271 271 271 ILE ILE P . n A 1 272 VAL 272 272 272 VAL VAL P . n A 1 273 THR 273 273 273 THR THR P . n A 1 274 ASN 274 274 274 ASN ASN P . n A 1 275 ILE 275 275 275 ILE ILE P . n A 1 276 ARG 276 276 276 ARG ARG P . n A 1 277 ALA 277 277 277 ALA ALA P . n A 1 278 LEU 278 278 278 LEU LEU P . n A 1 279 LEU 279 279 279 LEU LEU P . n A 1 280 THR 280 280 280 THR THR P . n A 1 281 PRO 281 281 281 PRO PRO P . n A 1 282 GLN 282 282 282 GLN GLN P . n A 1 283 PRO 283 283 283 PRO PRO P . n A 1 284 LEU 284 284 284 LEU LEU P . n A 1 285 ARG 285 285 285 ARG ARG P . n A 1 286 GLU 286 286 286 GLU GLU P . n A 1 287 LEU 287 287 287 LEU LEU P . n A 1 288 ARG 288 288 288 ARG ARG P . n A 1 289 LEU 289 289 289 LEU LEU P . n A 1 290 LYS 290 290 290 LYS LYS P . n A 1 291 SER 291 291 291 SER SER P . n A 1 292 GLU 292 292 292 GLU GLU P . n A 1 293 TYR 293 293 293 TYR TYR P . n A 1 294 VAL 294 294 294 VAL VAL P . n A 1 295 HSO 295 295 295 HSO HSO P . n A 1 296 HSO 296 296 296 HSO HSO P . n A 1 297 LYS 297 297 297 LYS LYS P . n A 1 298 GLU 298 298 298 GLU GLU P . n A 1 299 VAL 299 299 299 VAL VAL P . n A 1 300 LYS 300 300 300 LYS LYS P . n A 1 301 ALA 301 301 301 ALA ALA P . n A 1 302 ALA 302 302 302 ALA ALA P . n A 1 303 LEU 303 303 303 LEU LEU P . n A 1 304 GLY 304 304 304 GLY GLY P . n A 1 305 VAL 305 305 305 VAL VAL P . n A 1 306 LYS 306 306 306 LYS LYS P . n A 1 307 ILE 307 307 307 ILE ILE P . n A 1 308 ALA 308 308 308 ALA ALA P . n A 1 309 ALA 309 309 309 ALA ALA P . n A 1 310 ASN 310 310 310 ASN ASN P . n A 1 311 ASP 311 311 311 ASP ASP P . n A 1 312 LEU 312 312 312 LEU LEU P . n A 1 313 GLU 313 313 313 GLU GLU P . n A 1 314 LYS 314 314 314 LYS LYS P . n A 1 315 ALA 315 315 315 ALA ALA P . n A 1 316 VAL 316 316 316 VAL VAL P . n A 1 317 SER 317 317 317 SER SER P . n A 1 318 GLY 318 318 318 GLY GLY P . n A 1 319 SER 319 319 319 SER SER P . n A 1 320 ARG 320 320 320 ARG ARG P . n A 1 321 LEU 321 321 321 LEU LEU P . n A 1 322 LEU 322 322 322 LEU LEU P . n A 1 323 VAL 323 323 323 VAL VAL P . n A 1 324 VAL 324 324 324 VAL VAL P . n A 1 325 GLY 325 325 325 GLY GLY P . n A 1 326 PRO 326 326 326 PRO PRO P . n A 1 327 GLU 327 327 327 GLU GLU P . n A 1 328 ASP 328 328 328 ASP ASP P . n A 1 329 ASP 329 329 329 ASP ASP P . n A 1 330 GLU 330 330 330 GLU GLU P . n A 1 331 ASP 331 331 331 ASP ASP P . n A 1 332 GLU 332 332 332 GLU GLU P . n A 1 333 LEU 333 333 333 LEU LEU P . n A 1 334 MET 334 334 334 MET MET P . n A 1 335 ASP 335 335 335 ASP ASP P . n A 1 336 ASP 336 336 336 ASP ASP P . n A 1 337 VAL 337 337 337 VAL VAL P . n A 1 338 MET 338 338 338 MET MET P . n A 1 339 ASP 339 339 339 ASP ASP P . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GCP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1340 _pdbx_nonpoly_scheme.auth_seq_num 1340 _pdbx_nonpoly_scheme.pdb_mon_id GCP _pdbx_nonpoly_scheme.auth_mon_id GCP _pdbx_nonpoly_scheme.pdb_strand_id P _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A HSO 13 P HSO 13 ? HIS L-HISTIDINOL 2 A HSO 80 P HSO 80 ? HIS L-HISTIDINOL 3 A HSO 105 P HSO 105 ? HIS L-HISTIDINOL 4 A HSO 229 P HSO 229 ? HIS L-HISTIDINOL 5 A HSO 295 P HSO 295 ? HIS L-HISTIDINOL 6 A HSO 296 P HSO 296 ? HIS L-HISTIDINOL # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-20 2 'Structure model' 1 1 2013-11-27 3 'Structure model' 1 2 2014-12-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "PB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4BYR _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.target_criteria ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.method MDFF _em_3d_fitting.details ? # _em_3d_reconstruction.entry_id 4BYR _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 1.77 _em_3d_reconstruction.resolution 4.3 _em_3d_reconstruction.magnification_calibration 'CROSS- -CORRELATION BETWEEN CRYO-EM MAP AND CRYSTAL STRUCTURE' _em_3d_reconstruction.details ;USE A NEWLY DEVELOPED STATISTICAL MOVIE PROCESSING APPROACH TO COMPENSATE FOR BEAM-INDUCED MOVEMENT. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2421. (DEPOSITION ID: 11807). ; _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.symmetry_type ? # _em_buffer.id 1 _em_buffer.name '3MM HEPES-KOH, 6.6 MM TRIS-ACETATE PH 7.2, 3 MM NH4CL, 6.6 MM NH4- ACETATE, 48 MM K-ACETATE, 4 MM MG-ACETATE, 2. 4 MM DTT' _em_buffer.specimen_id ? _em_buffer.pH ? _em_buffer.details ? # _em_image_scans.entry_id 4BYR _em_image_scans.id 1 _em_image_scans.number_digital_images 1012 _em_image_scans.citation_id ? _em_image_scans.image_recording_id 1 _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 4BYR _em_imaging.id 1 _em_imaging.date 2013-01-15 _em_imaging.temperature 85 _em_imaging.microscope_model OTHER _em_imaging.nominal_defocus_min 1900 _em_imaging.nominal_defocus_max 3900 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 59000 _em_imaging.calibrated_magnification 79096 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.specimen_id 1 _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.specimen_id 1 _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4BYR _em_vitrification.id 1 _em_vitrification.details ;VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 100, TEMPERATURE- 90, INSTRUMENT- FEI VITROBOT MARK II, METHOD- BLOT 2.5 SECONDS BEFORE PLUNGING, ; _em_vitrification.specimen_id 1 _em_vitrification.citation_id ? _em_vitrification.cryogen_name ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4BYR _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.id 1 _em_experiment.entity_assembly_id 1 _em_experiment.aggregation_state ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HA3 P GLY 17 ? ? O1G P GCP 1340 ? ? 0.41 2 1 CE P LYS 20 ? ? "C1'" P GCP 1340 ? ? 0.47 3 1 HD2 P LYS 20 ? ? N9 P GCP 1340 ? ? 0.67 4 1 HA2 P GLY 17 ? ? PG P GCP 1340 ? ? 0.73 5 1 O P GLY 17 ? ? O3G P GCP 1340 ? ? 0.74 6 1 HG23 P THR 16 ? ? "C5'" P GCP 1340 ? ? 0.76 7 1 HE3 P LYS 20 ? ? "O4'" P GCP 1340 ? ? 0.80 8 1 O P LYS 18 ? ? PA P GCP 1340 ? ? 0.82 9 1 HG21 P VAL 200 ? ? C2 P GCP 1340 ? ? 0.86 10 1 CA P GLY 17 ? ? PG P GCP 1340 ? ? 0.90 11 1 CA P GLY 17 ? ? O1G P GCP 1340 ? ? 0.92 12 1 CE P LYS 20 ? ? "O4'" P GCP 1340 ? ? 1.03 13 1 CD P LYS 20 ? ? N9 P GCP 1340 ? ? 1.04 14 1 O P LYS 18 ? ? O3A P GCP 1340 ? ? 1.10 15 1 HD2 P LYS 20 ? ? C4 P GCP 1340 ? ? 1.12 16 1 CD P LYS 20 ? ? "C1'" P GCP 1340 ? ? 1.13 17 1 HG21 P VAL 200 ? ? N2 P GCP 1340 ? ? 1.14 18 1 C P GLY 17 ? ? O3G P GCP 1340 ? ? 1.16 19 1 HE2 P LYS 20 ? ? "O4'" P GCP 1340 ? ? 1.18 20 1 HA2 P GLY 17 ? ? O2G P GCP 1340 ? ? 1.22 21 1 HE2 P LYS 20 ? ? "C1'" P GCP 1340 ? ? 1.22 22 1 C P LYS 18 ? ? O2B P GCP 1340 ? ? 1.23 23 1 HG23 P THR 16 ? ? "O5'" P GCP 1340 ? ? 1.26 24 1 HD3 P LYS 20 ? ? "O2'" P GCP 1340 ? ? 1.31 25 1 HA P LYS 18 ? ? O2B P GCP 1340 ? ? 1.34 26 1 HG21 P VAL 200 ? ? N1 P GCP 1340 ? ? 1.35 27 1 C P GLY 17 ? ? PG P GCP 1340 ? ? 1.38 28 1 H P LYS 18 ? ? C3B P GCP 1340 ? ? 1.38 29 1 CA P LYS 18 ? ? O2B P GCP 1340 ? ? 1.38 30 1 HE2 P LYS 20 ? ? "C3'" P GCP 1340 ? ? 1.40 31 1 HE2 P LYS 20 ? ? "C4'" P GCP 1340 ? ? 1.40 32 1 HG23 P VAL 200 ? ? N2 P GCP 1340 ? ? 1.44 33 1 O P LYS 18 ? ? O1A P GCP 1340 ? ? 1.44 34 1 N P LYS 18 ? ? C3B P GCP 1340 ? ? 1.44 35 1 HB1 P ALA 199 ? ? O6 P GCP 1340 ? ? 1.45 36 1 HG2 P LYS 131 ? ? C6 P GCP 1340 ? ? 1.46 37 1 HE3 P LYS 20 ? ? "C1'" P GCP 1340 ? ? 1.46 38 1 HD2 P LYS 20 ? ? C8 P GCP 1340 ? ? 1.47 39 1 HZ3 P LYS 20 ? ? N3 P GCP 1340 ? ? 1.47 40 1 HA2 P GLY 17 ? ? O1G P GCP 1340 ? ? 1.47 41 1 CD P LYS 20 ? ? "C2'" P GCP 1340 ? ? 1.48 42 1 HG22 P VAL 200 ? ? N1 P GCP 1340 ? ? 1.54 43 1 HB P THR 16 ? ? O3A P GCP 1340 ? ? 1.54 44 1 HE2 P LYS 20 ? ? "C2'" P GCP 1340 ? ? 1.55 45 1 N P THR 19 ? ? O2B P GCP 1340 ? ? 1.56 46 1 HD3 P LYS 20 ? ? "C2'" P GCP 1340 ? ? 1.56 47 1 HG2 P LYS 131 ? ? O6 P GCP 1340 ? ? 1.57 48 1 CG2 P VAL 200 ? ? N2 P GCP 1340 ? ? 1.57 49 1 HD3 P LYS 131 ? ? C4 P GCP 1340 ? ? 1.57 50 1 N P GLY 17 ? ? C3B P GCP 1340 ? ? 1.57 51 1 HG2 P LYS 20 ? ? "C2'" P GCP 1340 ? ? 1.58 52 1 C P GLY 17 ? ? C3B P GCP 1340 ? ? 1.58 53 1 O P THR 16 ? ? O1B P GCP 1340 ? ? 1.60 54 1 CE P LYS 20 ? ? N9 P GCP 1340 ? ? 1.64 55 1 CA P GLY 17 ? ? C3B P GCP 1340 ? ? 1.64 56 1 NZ P LYS 20 ? ? "C1'" P GCP 1340 ? ? 1.68 57 1 C P THR 16 ? ? C3B P GCP 1340 ? ? 1.68 58 1 CG2 P THR 16 ? ? "C5'" P GCP 1340 ? ? 1.68 59 1 O P THR 16 ? ? PB P GCP 1340 ? ? 1.69 60 1 CG2 P VAL 200 ? ? N1 P GCP 1340 ? ? 1.71 61 1 CA P ALA 199 ? ? O6 P GCP 1340 ? ? 1.73 62 1 O P THR 16 ? ? C3B P GCP 1340 ? ? 1.73 63 1 C P ALA 199 ? ? O6 P GCP 1340 ? ? 1.74 64 1 C P LYS 18 ? ? O3A P GCP 1340 ? ? 1.75 65 1 CE P LYS 20 ? ? "C2'" P GCP 1340 ? ? 1.78 66 1 CG P LYS 20 ? ? "C2'" P GCP 1340 ? ? 1.80 67 1 O P PRO 78 ? ? O2G P GCP 1340 ? ? 1.81 68 1 C P LYS 18 ? ? PB P GCP 1340 ? ? 1.83 69 1 C P THR 19 ? ? O2A P GCP 1340 ? ? 1.84 70 1 CB P ALA 199 ? ? O6 P GCP 1340 ? ? 1.85 71 1 CG2 P VAL 200 ? ? C2 P GCP 1340 ? ? 1.86 72 1 O P LYS 18 ? ? O2A P GCP 1340 ? ? 1.86 73 1 C P LYS 18 ? ? PA P GCP 1340 ? ? 1.87 74 1 CG P LYS 20 ? ? C8 P GCP 1340 ? ? 1.88 75 1 CD P LYS 20 ? ? C8 P GCP 1340 ? ? 1.93 76 1 O P GLY 17 ? ? PG P GCP 1340 ? ? 1.98 77 1 N P LYS 18 ? ? O2B P GCP 1340 ? ? 1.98 78 1 C P GLY 17 ? ? O1G P GCP 1340 ? ? 2.00 79 1 N P LYS 18 ? ? PB P GCP 1340 ? ? 2.03 80 1 N P GLY 17 ? ? PG P GCP 1340 ? ? 2.05 81 1 CA P THR 19 ? ? O2A P GCP 1340 ? ? 2.07 82 1 C P LYS 18 ? ? O2A P GCP 1340 ? ? 2.07 83 1 N P ALA 199 ? ? O6 P GCP 1340 ? ? 2.07 84 1 CG P LYS 20 ? ? N9 P GCP 1340 ? ? 2.07 85 1 CD P LYS 20 ? ? C4 P GCP 1340 ? ? 2.08 86 1 O P LYS 18 ? ? PB P GCP 1340 ? ? 2.09 87 1 N P GLY 17 ? ? O1G P GCP 1340 ? ? 2.10 88 1 N P LYS 18 ? ? O3G P GCP 1340 ? ? 2.11 89 1 CD P LYS 20 ? ? "O2'" P GCP 1340 ? ? 2.12 90 1 O P PRO 78 ? ? O3G P GCP 1340 ? ? 2.12 91 1 NZ P LYS 20 ? ? "O4'" P GCP 1340 ? ? 2.13 92 1 C P THR 16 ? ? PB P GCP 1340 ? ? 2.13 93 1 CE P LYS 20 ? ? "C4'" P GCP 1340 ? ? 2.14 94 1 N P VAL 200 ? ? O6 P GCP 1340 ? ? 2.14 95 1 N P LYS 20 ? ? O2A P GCP 1340 ? ? 2.15 96 1 N P THR 19 ? ? O2A P GCP 1340 ? ? 2.15 97 1 NZ P LYS 20 ? ? N3 P GCP 1340 ? ? 2.16 98 1 CA P GLY 17 ? ? O3G P GCP 1340 ? ? 2.17 99 1 C P ALA 199 ? ? C6 P GCP 1340 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N P GLU 63 ? ? CA P GLU 63 ? ? 2.840 1.459 1.381 0.020 N 2 1 CE2 P TRP 210 ? ? CZ2 P TRP 210 ? ? 1.936 1.393 0.543 0.017 N 3 1 CE2 P TRP 210 ? ? CD2 P TRP 210 ? ? 1.805 1.409 0.396 0.012 N 4 1 CD2 P TRP 210 ? ? CE3 P TRP 210 ? ? 1.920 1.399 0.521 0.015 N 5 1 CE3 P TRP 210 ? ? CZ3 P TRP 210 ? ? 1.828 1.380 0.448 0.017 N 6 1 CZ3 P TRP 210 ? ? CH2 P TRP 210 ? ? 1.782 1.396 0.386 0.016 N 7 1 CH2 P TRP 210 ? ? CZ2 P TRP 210 ? ? 1.823 1.369 0.454 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N P THR 16 ? ? CA P THR 16 ? ? C P THR 16 ? ? 93.19 111.00 -17.81 2.70 N 2 1 N P LYS 18 ? ? CA P LYS 18 ? ? C P LYS 18 ? ? 94.69 111.00 -16.31 2.70 N 3 1 C P TYR 62 ? ? N P GLU 63 ? ? CA P GLU 63 ? ? 142.87 121.70 21.17 2.50 Y 4 1 CB P GLU 63 ? ? CA P GLU 63 ? ? C P GLU 63 ? ? 87.99 110.40 -22.41 2.00 N 5 1 N P GLU 63 ? ? CA P GLU 63 ? ? CB P GLU 63 ? ? 130.08 110.60 19.48 1.80 N 6 1 N P GLU 63 ? ? CA P GLU 63 ? ? C P GLU 63 ? ? 130.55 111.00 19.55 2.70 N 7 1 C P GLU 81 ? ? N P SER 82 ? ? CA P SER 82 ? ? 137.79 121.70 16.09 2.50 Y 8 1 CB P PHE 83 ? ? CG P PHE 83 ? ? CD2 P PHE 83 ? ? 116.56 120.80 -4.24 0.70 N 9 1 CB P TYR 136 ? ? CG P TYR 136 ? ? CD1 P TYR 136 ? ? 125.89 121.00 4.89 0.60 N 10 1 CG P TRP 210 ? ? CD1 P TRP 210 ? ? NE1 P TRP 210 ? ? 117.42 110.10 7.32 1.00 N 11 1 NE1 P TRP 210 ? ? CE2 P TRP 210 ? ? CZ2 P TRP 210 ? ? 137.27 130.40 6.87 1.10 N 12 1 CE2 P TRP 210 ? ? CD2 P TRP 210 ? ? CG P TRP 210 ? ? 101.97 107.30 -5.33 0.80 N 13 1 N P GLY 244 ? ? CA P GLY 244 ? ? C P GLY 244 ? ? 129.91 113.10 16.81 2.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HSO P 13 ? ? 86.38 162.56 2 1 THR P 16 ? ? -176.26 77.97 3 1 GLN P 31 ? ? -111.61 72.13 4 1 GLN P 41 ? ? -74.05 -145.61 5 1 PRO P 48 ? ? -44.98 152.29 6 1 THR P 56 ? ? 166.02 140.14 7 1 ALA P 60 ? ? 157.26 -32.71 8 1 GLU P 61 ? ? -169.15 -4.48 9 1 THR P 66 ? ? -160.29 10.33 10 1 LEU P 73 ? ? 90.27 55.60 11 1 THR P 77 ? ? -149.49 -32.47 12 1 SER P 82 ? ? 28.58 -122.40 13 1 PHE P 83 ? ? 94.50 70.69 14 1 SER P 88 ? ? 67.59 -103.23 15 1 CYS P 94 ? ? 47.38 -175.25 16 1 ASN P 95 ? ? 53.95 -151.84 17 1 HSO P 105 ? ? -140.39 -34.40 18 1 GLN P 109 ? ? -57.80 -79.47 19 1 LYS P 131 ? ? 70.71 142.81 20 1 ILE P 132 ? ? -148.17 22.59 21 1 ARG P 134 ? ? -96.19 46.71 22 1 TYR P 136 ? ? -31.65 137.25 23 1 ASP P 137 ? ? 66.66 -14.07 24 1 TRP P 138 ? ? -42.02 166.23 25 1 SER P 154 ? ? -52.88 172.95 26 1 ASN P 185 ? ? -33.93 132.53 27 1 ASN P 187 ? ? 46.06 132.80 28 1 LYS P 190 ? ? -93.35 -60.55 29 1 GLU P 203 ? ? -161.77 103.67 30 1 SER P 221 ? ? -147.91 -85.11 31 1 MET P 267 ? ? -162.19 -10.05 32 1 THR P 280 ? ? 99.49 134.88 33 1 PRO P 281 ? ? -83.03 -150.21 34 1 PRO P 283 ? ? -72.61 -137.65 35 1 ARG P 285 ? ? 79.70 118.11 36 1 GLU P 286 ? ? 177.81 98.57 37 1 ARG P 288 ? ? -159.45 7.51 38 1 LYS P 290 ? ? 51.18 -178.03 39 1 SER P 291 ? ? -48.63 158.92 40 1 GLU P 313 ? ? -131.97 -96.44 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PHE P 47 ? ? PRO P 48 ? ? 147.71 2 1 LEU P 227 ? ? SER P 228 ? ? -121.27 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ASP _pdbx_validate_main_chain_plane.auth_asym_id P _pdbx_validate_main_chain_plane.auth_seq_id 2 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.34 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG P 4 ? ? 0.081 'SIDE CHAIN' 2 1 TYR P 62 ? ? 0.162 'SIDE CHAIN' 3 1 TYR P 165 ? ? 0.067 'SIDE CHAIN' 4 1 ARG P 219 ? ? 0.078 'SIDE CHAIN' 5 1 ARG P 320 ? ? 0.085 'SIDE CHAIN' # _em_image_processing.id 1 _em_image_processing.image_recording_id . _em_image_processing.details ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied . _em_specimen.shadowing_applied . _em_specimen.staining_applied . _em_specimen.vitrification_applied . # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _pdbx_entity_nonpoly.comp_id GCP #