data_4BYS # _entry.id 4BYS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4BYS PDBE EBI-57753 WWPDB D_1290057753 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2014-12-10 _pdbx_database_PDB_obs_spr.pdb_id 4V8Y _pdbx_database_PDB_obs_spr.replace_pdb_id 4BYS _pdbx_database_PDB_obs_spr.details ;THIS ENTRY WITH OTHER SPLIT ENTRIES HAVE BEEN CONSOLIDATED INTO A COMBINED FILE FOR COMPLETE REPRESENTATION. NO COORDINATES HAVE BEEN CHANGED. ; # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4BYL split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYN split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYO split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYP split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYQ split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYR split 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYS split . EMDB EMD-2421 'associated EM volume' 'MOLECULAR ARCHITECTURE OF THE 80S-EIF5B-MET-ITRNAMET' PDB 4BYT unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYU unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYV unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYW unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' PDB 4BYX unspecified 'CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TRANSLATION INITIATION COMPLEX' # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4BYS _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-07-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fernandez, I.S.' 1 'Bai, X.C.' 2 'Hussain, T.' 3 'Kelley, A.C.' 4 'Lorsch, J.R.' 5 'Ramakrishnan, V.' 6 'Scheres, S.H.W.' 7 # _citation.id primary _citation.title 'Molecular Architecture of a Eukaryotic Translational Initiation Complex.' _citation.journal_abbrev Science _citation.journal_volume 342 _citation.page_first 40585 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24200810 _citation.pdbx_database_id_DOI 10.1126/SCIENCE.1240585 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Fernandez, I.S.' 1 primary 'Bai, X.C.' 2 primary 'Hussain, T.' 3 primary 'Kelley, A.C.' 4 primary 'Lorsch, J.R.' 5 primary 'Ramakrishnan, V.' 6 primary 'Scheres, S.H.' 7 # _cell.entry_id 4BYS _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BYS _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'EUKARYOTIC RIBOSOMAL P_E TRNA' _entity.formula_weight 24485.539 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA _entity_poly.pdbx_seq_one_letter_code_can GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA _entity_poly.pdbx_strand_id W _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 C n 1 18 G n 1 19 G n 1 20 U n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 A n 1 27 G n 1 28 G n 1 29 G n 1 30 G n 1 31 A n 1 32 U n 1 33 U n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 A n 1 39 U n 1 40 C n 1 41 C n 1 42 C n 1 43 C n 1 44 G n 1 45 U n 1 46 G n 1 47 U n 1 48 C n 1 49 C n 1 50 U n 1 51 U n 1 52 G n 1 53 G n 1 54 U n 1 55 U n 1 56 C n 1 57 G n 1 58 A n 1 59 U n 1 60 U n 1 61 C n 1 62 C n 1 63 G n 1 64 A n 1 65 G n 1 66 U n 1 67 C n 1 68 C n 1 69 G n 1 70 G n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;BAKER'S YEAST ; _entity_src_nat.pdbx_organism_scientific 'SACCHAROMYCES CEREVISIAE' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4BYS _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 4BYS _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4BYS _struct_ref_seq.pdbx_strand_id W _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4BYS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 4BYS _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4BYS _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 4.30 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1576 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1576 _refine_hist.d_res_high 4.30 _refine_hist.d_res_low . # _struct.entry_id 4BYS _struct.title 'Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex' _struct.pdbx_descriptor 74-MER _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BYS _struct_keywords.pdbx_keywords RIBOSOME _struct_keywords.text 'RIBOSOME, RIBOSOME INITIATION COMPLEX, INITIATOR FACTOR EIF5B' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? W G 1 W C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? W G 1 W C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? W G 1 W C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? W C 2 W G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? W C 2 W G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? W C 2 W G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 70 N1 ? ? W C 3 W G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 70 O6 ? ? W C 3 W G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 70 N2 ? ? W C 3 W G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 69 N1 ? ? W C 4 W G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 69 O6 ? ? W C 4 W G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 69 N2 ? ? W C 4 W G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 68 N3 ? ? W G 5 W C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 68 O2 ? ? W G 5 W C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 68 N4 ? ? W G 5 W C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 67 N3 ? ? W G 6 W C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 67 O2 ? ? W G 6 W C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 67 N4 ? ? W G 6 W C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 66 N3 ? ? W A 7 W U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 66 O4 ? ? W A 7 W U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? W U 8 W A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog22 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? W U 8 W A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 25 N3 ? ? W G 10 W C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 25 O2 ? ? W G 10 W C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 25 N4 ? ? W G 10 W C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? W C 11 W G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? W C 11 W G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? W C 11 W G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? W C 13 W G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? W C 13 W G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? W C 13 W G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 21 N3 ? ? W A 14 W A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 48 O2 ? ? W G 15 W C 48 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog34 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 56 N3 ? ? W G 19 W C 56 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog35 hydrog ? ? A U 20 N3 ? ? ? 1_555 A U 59 O4 ? ? W U 20 W U 59 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? hydrog36 hydrog ? ? A U 20 N3 ? ? ? 1_555 A U 60 O4 ? ? W U 20 W U 60 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? hydrog37 hydrog ? ? A G 22 N7 ? ? ? 1_555 A G 46 N1 ? ? W G 22 W G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog38 hydrog ? ? A G 22 O6 ? ? ? 1_555 A G 46 N2 ? ? W G 22 W G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog39 hydrog ? ? A A 26 N1 ? ? ? 1_555 A G 44 N1 ? ? W A 26 W G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog40 hydrog ? ? A A 26 N6 ? ? ? 1_555 A G 44 O6 ? ? W A 26 W G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog41 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 43 N4 ? ? W G 27 W C 43 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog42 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 42 N3 ? ? W G 28 W C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 42 O2 ? ? W G 28 W C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 42 N4 ? ? W G 28 W C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 41 N3 ? ? W G 29 W C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 41 O2 ? ? W G 29 W C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 41 N4 ? ? W G 29 W C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 40 N3 ? ? W G 30 W C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 40 O2 ? ? W G 30 W C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 40 N4 ? ? W G 30 W C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A A 31 N1 ? ? ? 1_555 A U 39 N3 ? ? W A 31 W U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A A 31 N6 ? ? ? 1_555 A U 39 O4 ? ? W A 31 W U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 65 N2 ? ? W C 49 W G 65 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog54 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 64 N1 ? ? W U 50 W A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 64 N6 ? ? W U 50 W A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? A U 51 N3 ? ? ? 1_555 A G 63 O6 ? ? W U 51 W G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog57 hydrog ? ? A U 51 O2 ? ? ? 1_555 A G 63 N1 ? ? W U 51 W G 63 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog58 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 62 N3 ? ? W G 52 W C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 62 O2 ? ? W G 52 W C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 62 N4 ? ? W G 52 W C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? W G 53 W C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? W G 53 W C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? W G 53 W C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A U 54 N3 ? ? ? 1_555 A A 58 N7 ? ? W U 54 W A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog65 hydrog ? ? A U 54 O2 ? ? ? 1_555 A A 58 N6 ? ? W U 54 W A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4BYS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BYS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G W . n A 1 2 C 2 2 2 C C W . n A 1 3 C 3 3 3 C C W . n A 1 4 C 4 4 4 C C W . n A 1 5 G 5 5 5 G G W . n A 1 6 G 6 6 6 G G W . n A 1 7 A 7 7 7 A A W . n A 1 8 U 8 8 8 U U W . n A 1 9 A 9 9 9 A A W . n A 1 10 G 10 10 10 G G W . n A 1 11 C 11 11 11 C C W . n A 1 12 U 12 12 12 U U W . n A 1 13 C 13 13 13 C C W . n A 1 14 A 14 14 14 A A W . n A 1 15 G 15 15 15 G G W . n A 1 16 U 16 16 ? ? ? W . n A 1 17 C 17 17 ? ? ? W . n A 1 18 G 18 18 18 G G W . n A 1 19 G 19 19 19 G G W . n A 1 20 U 20 20 20 U U W . n A 1 21 A 21 21 21 A A W . n A 1 22 G 22 22 22 G G W . n A 1 23 A 23 23 23 A A W . n A 1 24 G 24 24 24 G G W . n A 1 25 C 25 25 25 C C W . n A 1 26 A 26 26 26 A A W . n A 1 27 G 27 27 27 G G W . n A 1 28 G 28 28 28 G G W . n A 1 29 G 29 29 29 G G W . n A 1 30 G 30 30 30 G G W . n A 1 31 A 31 31 31 A A W . n A 1 32 U 32 32 32 U U W . n A 1 33 U 33 33 33 U U W . n A 1 34 G 34 34 34 G G W . n A 1 35 A 35 35 35 A A W . n A 1 36 A 36 36 36 A A W . n A 1 37 A 37 37 37 A A W . n A 1 38 A 38 38 38 A A W . n A 1 39 U 39 39 39 U U W . n A 1 40 C 40 40 40 C C W . n A 1 41 C 41 41 41 C C W . n A 1 42 C 42 42 42 C C W . n A 1 43 C 43 43 43 C C W . n A 1 44 G 44 44 44 G G W . n A 1 45 U 45 45 45 U U W . n A 1 46 G 46 46 46 G G W . n A 1 47 U 47 47 47 U U W . n A 1 48 C 48 48 48 C C W . n A 1 49 C 49 49 49 C C W . n A 1 50 U 50 50 50 U U W . n A 1 51 U 51 51 51 U U W . n A 1 52 G 52 52 52 G G W . n A 1 53 G 53 53 53 G G W . n A 1 54 U 54 54 54 U U W . n A 1 55 U 55 55 55 U U W . n A 1 56 C 56 56 56 C C W . n A 1 57 G 57 57 57 G G W . n A 1 58 A 58 58 58 A A W . n A 1 59 U 59 59 59 U U W . n A 1 60 U 60 60 60 U U W . n A 1 61 C 61 61 61 C C W . n A 1 62 C 62 62 62 C C W . n A 1 63 G 63 63 63 G G W . n A 1 64 A 64 64 64 A A W . n A 1 65 G 65 65 65 G G W . n A 1 66 U 66 66 66 U U W . n A 1 67 C 67 67 67 C C W . n A 1 68 C 68 68 68 C C W . n A 1 69 G 69 69 69 G G W . n A 1 70 G 70 70 70 G G W . n A 1 71 G 71 71 71 G G W . n A 1 72 C 72 72 72 C C W . n A 1 73 A 73 73 73 A A W . n A 1 74 C 74 74 74 C C W . n A 1 75 C 75 75 75 C C W . n A 1 76 A 76 76 76 A A W . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-20 2 'Structure model' 1 1 2013-11-27 3 'Structure model' 1 2 2014-12-10 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4BYS _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.target_criteria ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.method MDFF _em_3d_fitting.details ? # _em_3d_reconstruction.entry_id 4BYS _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size 1.77 _em_3d_reconstruction.resolution 4.3 _em_3d_reconstruction.magnification_calibration 'CROSS- -CORRELATION BETWEEN CRYO-EM MAP AND CRYSTAL STRUCTURE' _em_3d_reconstruction.details ;USE A NEWLY DEVELOPED STATISTICAL MOVIE PROCESSING APPROACH TO COMPENSATE FOR BEAM-INDUCED MOVEMENT. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2421. (DEPOSITION ID: 11807). ; _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.symmetry_type ? # _em_buffer.id 1 _em_buffer.name '3MM HEPES-KOH, 6.6 MM TRIS-ACETATE PH 7.2, 3 MM NH4CL, 6.6 MM NH4- ACETATE, 48 MM K-ACETATE, 4 MM MG-ACETATE, 2. 4 MM DTT' _em_buffer.specimen_id ? _em_buffer.pH ? _em_buffer.details ? # _em_image_scans.entry_id 4BYS _em_image_scans.id 1 _em_image_scans.number_digital_images 1012 _em_image_scans.citation_id ? _em_image_scans.image_recording_id 1 _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 4BYS _em_imaging.id 1 _em_imaging.date 2013-01-15 _em_imaging.temperature 85 _em_imaging.microscope_model OTHER _em_imaging.nominal_defocus_min 1900 _em_imaging.nominal_defocus_max 3900 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 59000 _em_imaging.calibrated_magnification 79096 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.specimen_id 1 _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.specimen_id 1 _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4BYS _em_vitrification.id 1 _em_vitrification.details ;VITRIFICATION 1 -- CRYOGEN- ETHANE, HUMIDITY- 100, TEMPERATURE- 90, INSTRUMENT- FEI VITROBOT MARK II, METHOD- BLOT 2.5 SECONDS BEFORE PLUNGING, ; _em_vitrification.specimen_id 1 _em_vitrification.citation_id ? _em_vitrification.cryogen_name ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4BYS _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.id 1 _em_experiment.entity_assembly_id 1 _em_experiment.aggregation_state ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 W A 14 ? ? N7 W A 14 ? ? 1.348 1.388 -0.040 0.006 N 2 1 C5 W G 15 ? ? N7 W G 15 ? ? 1.349 1.388 -0.039 0.006 N 3 1 "O3'" W G 19 ? ? P W U 20 ? ? 1.532 1.607 -0.075 0.012 Y 4 1 "O3'" W C 43 ? ? P W G 44 ? ? 1.533 1.607 -0.074 0.012 Y 5 1 "C2'" W G 44 ? ? "C1'" W G 44 ? ? 1.463 1.526 -0.063 0.008 N 6 1 "C2'" W G 46 ? ? "C1'" W G 46 ? ? 1.478 1.526 -0.048 0.008 N 7 1 P W C 56 ? ? "O5'" W C 56 ? ? 1.524 1.593 -0.069 0.010 N 8 1 C5 W G 57 ? ? N7 W G 57 ? ? 1.346 1.388 -0.042 0.006 N 9 1 N3 W C 72 ? ? C4 W C 72 ? ? 1.379 1.335 0.044 0.007 N 10 1 "C4'" W A 73 ? ? "C3'" W A 73 ? ? 1.594 1.527 0.067 0.011 N 11 1 "C5'" W C 74 ? ? "C4'" W C 74 ? ? 1.586 1.509 0.077 0.012 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" W G 1 ? ? "C1'" W G 1 ? ? N9 W G 1 ? ? 113.81 108.50 5.31 0.70 N 2 1 N1 W G 1 ? ? C6 W G 1 ? ? O6 W G 1 ? ? 124.79 119.90 4.89 0.60 N 3 1 C5 W G 1 ? ? C6 W G 1 ? ? O6 W G 1 ? ? 124.06 128.60 -4.54 0.60 N 4 1 "C3'" W G 1 ? ? "O3'" W G 1 ? ? P W C 2 ? ? 111.78 119.70 -7.92 1.20 Y 5 1 "O4'" W C 2 ? ? "C1'" W C 2 ? ? N1 W C 2 ? ? 114.13 108.50 5.63 0.70 N 6 1 N3 W C 2 ? ? C4 W C 2 ? ? N4 W C 2 ? ? 122.45 118.00 4.45 0.70 N 7 1 "O4'" W C 3 ? ? "C1'" W C 3 ? ? N1 W C 3 ? ? 113.90 108.50 5.40 0.70 N 8 1 "O4'" W C 4 ? ? "C1'" W C 4 ? ? N1 W C 4 ? ? 113.62 108.50 5.12 0.70 N 9 1 "C5'" W G 5 ? ? "C4'" W G 5 ? ? "O4'" W G 5 ? ? 115.37 109.80 5.57 0.90 N 10 1 N1 W G 5 ? ? C6 W G 5 ? ? O6 W G 5 ? ? 125.35 119.90 5.45 0.60 N 11 1 C5 W G 5 ? ? C6 W G 5 ? ? O6 W G 5 ? ? 123.74 128.60 -4.86 0.60 N 12 1 N1 W G 6 ? ? C6 W G 6 ? ? O6 W G 6 ? ? 125.91 119.90 6.01 0.60 N 13 1 C5 W G 6 ? ? C6 W G 6 ? ? O6 W G 6 ? ? 123.24 128.60 -5.36 0.60 N 14 1 "O4'" W A 7 ? ? "C1'" W A 7 ? ? N9 W A 7 ? ? 112.96 108.50 4.46 0.70 N 15 1 C4 W A 7 ? ? C5 W A 7 ? ? C6 W A 7 ? ? 120.43 117.00 3.43 0.50 N 16 1 N1 W A 7 ? ? C6 W A 7 ? ? N6 W A 7 ? ? 125.32 118.60 6.72 0.60 N 17 1 C5 W A 7 ? ? C6 W A 7 ? ? N6 W A 7 ? ? 118.81 123.70 -4.89 0.80 N 18 1 "C3'" W U 8 ? ? "O3'" W U 8 ? ? P W A 9 ? ? 129.71 119.70 10.01 1.20 Y 19 1 N1 W A 9 ? ? C6 W A 9 ? ? N6 W A 9 ? ? 125.52 118.60 6.92 0.60 N 20 1 N1 W G 10 ? ? C6 W G 10 ? ? O6 W G 10 ? ? 124.18 119.90 4.28 0.60 N 21 1 C5 W G 10 ? ? C6 W G 10 ? ? O6 W G 10 ? ? 124.39 128.60 -4.21 0.60 N 22 1 "O4'" W C 11 ? ? "C1'" W C 11 ? ? N1 W C 11 ? ? 113.92 108.50 5.42 0.70 N 23 1 "O4'" W U 12 ? ? "C1'" W U 12 ? ? N1 W U 12 ? ? 113.92 108.50 5.42 0.70 N 24 1 "O4'" W C 13 ? ? "C1'" W C 13 ? ? N1 W C 13 ? ? 112.83 108.50 4.33 0.70 N 25 1 C4 W A 14 ? ? C5 W A 14 ? ? C6 W A 14 ? ? 120.45 117.00 3.45 0.50 N 26 1 N1 W A 14 ? ? C6 W A 14 ? ? N6 W A 14 ? ? 126.13 118.60 7.53 0.60 N 27 1 C5 W A 14 ? ? C6 W A 14 ? ? N6 W A 14 ? ? 118.16 123.70 -5.54 0.80 N 28 1 N1 W G 15 ? ? C6 W G 15 ? ? O6 W G 15 ? ? 124.35 119.90 4.45 0.60 N 29 1 N1 W G 18 ? ? C6 W G 18 ? ? O6 W G 18 ? ? 124.04 119.90 4.14 0.60 N 30 1 C5 W G 18 ? ? C6 W G 18 ? ? O6 W G 18 ? ? 124.97 128.60 -3.63 0.60 N 31 1 "C3'" W G 18 ? ? "O3'" W G 18 ? ? P W G 19 ? ? 135.08 119.70 15.38 1.20 Y 32 1 "O5'" W G 19 ? ? "C5'" W G 19 ? ? "C4'" W G 19 ? ? 103.16 109.40 -6.24 0.80 N 33 1 N1 W G 19 ? ? C6 W G 19 ? ? O6 W G 19 ? ? 124.57 119.90 4.67 0.60 N 34 1 C5 W G 19 ? ? C6 W G 19 ? ? O6 W G 19 ? ? 123.35 128.60 -5.25 0.60 N 35 1 "C3'" W G 19 ? ? "O3'" W G 19 ? ? P W U 20 ? ? 137.68 119.70 17.98 1.20 Y 36 1 "O4'" W U 20 ? ? "C1'" W U 20 ? ? N1 W U 20 ? ? 115.49 108.50 6.99 0.70 N 37 1 C2 W U 20 ? ? N1 W U 20 ? ? "C1'" W U 20 ? ? 127.06 117.70 9.36 1.20 N 38 1 "O4'" W A 21 ? ? "C1'" W A 21 ? ? N9 W A 21 ? ? 113.27 108.50 4.77 0.70 N 39 1 N1 W A 21 ? ? C6 W A 21 ? ? N6 W A 21 ? ? 126.03 118.60 7.43 0.60 N 40 1 "C3'" W A 21 ? ? "O3'" W A 21 ? ? P W G 22 ? ? 130.16 119.70 10.46 1.20 Y 41 1 N1 W G 22 ? ? C6 W G 22 ? ? O6 W G 22 ? ? 124.07 119.90 4.17 0.60 N 42 1 "O4'" W A 23 ? ? "C1'" W A 23 ? ? N9 W A 23 ? ? 112.89 108.50 4.39 0.70 N 43 1 N1 W A 23 ? ? C6 W A 23 ? ? N6 W A 23 ? ? 125.68 118.60 7.08 0.60 N 44 1 C5 W A 23 ? ? C6 W A 23 ? ? N6 W A 23 ? ? 118.82 123.70 -4.88 0.80 N 45 1 N1 W G 24 ? ? C6 W G 24 ? ? O6 W G 24 ? ? 126.57 119.90 6.67 0.60 N 46 1 C5 W G 24 ? ? C6 W G 24 ? ? O6 W G 24 ? ? 122.82 128.60 -5.78 0.60 N 47 1 "O4'" W C 25 ? ? "C1'" W C 25 ? ? N1 W C 25 ? ? 113.93 108.50 5.43 0.70 N 48 1 C4 W A 26 ? ? C5 W A 26 ? ? C6 W A 26 ? ? 120.11 117.00 3.11 0.50 N 49 1 N1 W A 26 ? ? C6 W A 26 ? ? N6 W A 26 ? ? 125.94 118.60 7.34 0.60 N 50 1 C5 W A 26 ? ? C6 W A 26 ? ? N6 W A 26 ? ? 118.56 123.70 -5.14 0.80 N 51 1 "C5'" W G 27 ? ? "C4'" W G 27 ? ? "C3'" W G 27 ? ? 106.03 115.20 -9.17 1.40 N 52 1 "C5'" W G 27 ? ? "C4'" W G 27 ? ? "O4'" W G 27 ? ? 116.42 109.80 6.62 0.90 N 53 1 N1 W G 27 ? ? C6 W G 27 ? ? O6 W G 27 ? ? 126.52 119.90 6.62 0.60 N 54 1 C5 W G 27 ? ? C6 W G 27 ? ? O6 W G 27 ? ? 122.99 128.60 -5.61 0.60 N 55 1 N1 W G 28 ? ? C6 W G 28 ? ? O6 W G 28 ? ? 126.50 119.90 6.60 0.60 N 56 1 C5 W G 28 ? ? C6 W G 28 ? ? O6 W G 28 ? ? 123.01 128.60 -5.59 0.60 N 57 1 N1 W G 29 ? ? C6 W G 29 ? ? O6 W G 29 ? ? 126.48 119.90 6.58 0.60 N 58 1 C5 W G 29 ? ? C6 W G 29 ? ? O6 W G 29 ? ? 122.53 128.60 -6.07 0.60 N 59 1 N1 W G 30 ? ? C6 W G 30 ? ? O6 W G 30 ? ? 125.97 119.90 6.07 0.60 N 60 1 C5 W G 30 ? ? C6 W G 30 ? ? O6 W G 30 ? ? 122.56 128.60 -6.04 0.60 N 61 1 "O4'" W A 31 ? ? "C1'" W A 31 ? ? N9 W A 31 ? ? 113.31 108.50 4.81 0.70 N 62 1 N1 W A 31 ? ? C6 W A 31 ? ? N6 W A 31 ? ? 126.75 118.60 8.15 0.60 N 63 1 C5 W A 31 ? ? C6 W A 31 ? ? N6 W A 31 ? ? 117.87 123.70 -5.83 0.80 N 64 1 "O4'" W U 32 ? ? "C1'" W U 32 ? ? N1 W U 32 ? ? 113.64 108.50 5.14 0.70 N 65 1 C6 W U 33 ? ? N1 W U 33 ? ? "C1'" W U 33 ? ? 111.33 121.20 -9.87 1.40 N 66 1 C2 W U 33 ? ? N1 W U 33 ? ? "C1'" W U 33 ? ? 128.12 117.70 10.42 1.20 N 67 1 N1 W G 34 ? ? C6 W G 34 ? ? O6 W G 34 ? ? 123.95 119.90 4.05 0.60 N 68 1 C4 W A 35 ? ? C5 W A 35 ? ? C6 W A 35 ? ? 120.36 117.00 3.36 0.50 N 69 1 N1 W A 35 ? ? C6 W A 35 ? ? N6 W A 35 ? ? 126.16 118.60 7.56 0.60 N 70 1 C5 W A 35 ? ? C6 W A 35 ? ? N6 W A 35 ? ? 118.83 123.70 -4.87 0.80 N 71 1 C4 W A 36 ? ? C5 W A 36 ? ? C6 W A 36 ? ? 120.31 117.00 3.31 0.50 N 72 1 N1 W A 36 ? ? C6 W A 36 ? ? N6 W A 36 ? ? 126.22 118.60 7.62 0.60 N 73 1 C4 W A 37 ? ? C5 W A 37 ? ? C6 W A 37 ? ? 120.11 117.00 3.11 0.50 N 74 1 C5 W A 37 ? ? C6 W A 37 ? ? N1 W A 37 ? ? 114.68 117.70 -3.02 0.50 N 75 1 N1 W A 37 ? ? C6 W A 37 ? ? N6 W A 37 ? ? 125.48 118.60 6.88 0.60 N 76 1 "C5'" W A 38 ? ? "C4'" W A 38 ? ? "O4'" W A 38 ? ? 115.51 109.80 5.71 0.90 N 77 1 C4 W A 38 ? ? C5 W A 38 ? ? C6 W A 38 ? ? 120.49 117.00 3.49 0.50 N 78 1 N1 W A 38 ? ? C6 W A 38 ? ? N6 W A 38 ? ? 126.91 118.60 8.31 0.60 N 79 1 C5 W A 38 ? ? C6 W A 38 ? ? N6 W A 38 ? ? 118.16 123.70 -5.54 0.80 N 80 1 "O4'" W U 39 ? ? "C1'" W U 39 ? ? N1 W U 39 ? ? 112.71 108.50 4.21 0.70 N 81 1 "O4'" W C 40 ? ? "C1'" W C 40 ? ? N1 W C 40 ? ? 113.56 108.50 5.06 0.70 N 82 1 N3 W C 40 ? ? C4 W C 40 ? ? N4 W C 40 ? ? 122.80 118.00 4.80 0.70 N 83 1 "O4'" W C 41 ? ? "C1'" W C 41 ? ? N1 W C 41 ? ? 113.00 108.50 4.50 0.70 N 84 1 N3 W C 41 ? ? C4 W C 41 ? ? N4 W C 41 ? ? 122.93 118.00 4.93 0.70 N 85 1 "O4'" W C 42 ? ? "C1'" W C 42 ? ? N1 W C 42 ? ? 114.96 108.50 6.46 0.70 N 86 1 N3 W C 42 ? ? C4 W C 42 ? ? N4 W C 42 ? ? 122.75 118.00 4.75 0.70 N 87 1 "O4'" W C 43 ? ? "C1'" W C 43 ? ? N1 W C 43 ? ? 115.57 108.50 7.07 0.70 N 88 1 C6 W C 43 ? ? N1 W C 43 ? ? C2 W C 43 ? ? 117.89 120.30 -2.41 0.40 N 89 1 C6 W C 43 ? ? N1 W C 43 ? ? "C1'" W C 43 ? ? 113.00 120.80 -7.80 1.20 N 90 1 C2 W C 43 ? ? N1 W C 43 ? ? "C1'" W C 43 ? ? 126.64 118.80 7.84 1.10 N 91 1 "C3'" W C 43 ? ? "O3'" W C 43 ? ? P W G 44 ? ? 135.05 119.70 15.35 1.20 Y 92 1 "O4'" W G 44 ? ? "C1'" W G 44 ? ? N9 W G 44 ? ? 115.20 108.50 6.70 0.70 N 93 1 N1 W G 44 ? ? C6 W G 44 ? ? O6 W G 44 ? ? 125.34 119.90 5.44 0.60 N 94 1 C5 W G 44 ? ? C6 W G 44 ? ? O6 W G 44 ? ? 123.79 128.60 -4.81 0.60 N 95 1 "O4'" W U 45 ? ? "C1'" W U 45 ? ? N1 W U 45 ? ? 115.58 108.50 7.08 0.70 N 96 1 C2 W U 45 ? ? N1 W U 45 ? ? "C1'" W U 45 ? ? 126.12 117.70 8.42 1.20 N 97 1 "O4'" W G 46 ? ? "C1'" W G 46 ? ? N9 W G 46 ? ? 114.32 108.50 5.82 0.70 N 98 1 N1 W G 46 ? ? C6 W G 46 ? ? O6 W G 46 ? ? 124.87 119.90 4.97 0.60 N 99 1 C5 W G 46 ? ? C6 W G 46 ? ? O6 W G 46 ? ? 124.39 128.60 -4.21 0.60 N 100 1 "C3'" W C 48 ? ? "O3'" W C 48 ? ? P W C 49 ? ? 131.04 119.70 11.34 1.20 Y 101 1 "O4'" W C 49 ? ? "C1'" W C 49 ? ? N1 W C 49 ? ? 113.27 108.50 4.77 0.70 N 102 1 "O4'" W U 51 ? ? "C1'" W U 51 ? ? N1 W U 51 ? ? 113.37 108.50 4.87 0.70 N 103 1 N1 W G 52 ? ? C6 W G 52 ? ? O6 W G 52 ? ? 126.51 119.90 6.61 0.60 N 104 1 C5 W G 52 ? ? C6 W G 52 ? ? O6 W G 52 ? ? 122.60 128.60 -6.00 0.60 N 105 1 "O5'" W G 53 ? ? "C5'" W G 53 ? ? "C4'" W G 53 ? ? 104.03 109.40 -5.37 0.80 N 106 1 N1 W G 53 ? ? C6 W G 53 ? ? O6 W G 53 ? ? 124.44 119.90 4.54 0.60 N 107 1 C5 W G 53 ? ? C6 W G 53 ? ? O6 W G 53 ? ? 124.89 128.60 -3.71 0.60 N 108 1 "O4'" W U 54 ? ? "C1'" W U 54 ? ? N1 W U 54 ? ? 113.85 108.50 5.35 0.70 N 109 1 "O4'" W U 55 ? ? "C1'" W U 55 ? ? N1 W U 55 ? ? 114.90 108.50 6.40 0.70 N 110 1 "O4'" W C 56 ? ? "C1'" W C 56 ? ? N1 W C 56 ? ? 114.14 108.50 5.64 0.70 N 111 1 N1 W G 57 ? ? C6 W G 57 ? ? O6 W G 57 ? ? 125.18 119.90 5.28 0.60 N 112 1 C5 W G 57 ? ? C6 W G 57 ? ? O6 W G 57 ? ? 124.49 128.60 -4.11 0.60 N 113 1 C4 W A 58 ? ? C5 W A 58 ? ? C6 W A 58 ? ? 120.21 117.00 3.21 0.50 N 114 1 N1 W A 58 ? ? C6 W A 58 ? ? N6 W A 58 ? ? 125.24 118.60 6.64 0.60 N 115 1 "O4'" W U 59 ? ? "C1'" W U 59 ? ? N1 W U 59 ? ? 113.60 108.50 5.10 0.70 N 116 1 "O4'" W U 60 ? ? "C1'" W U 60 ? ? N1 W U 60 ? ? 112.87 108.50 4.37 0.70 N 117 1 "O4'" W C 61 ? ? "C1'" W C 61 ? ? N1 W C 61 ? ? 113.43 108.50 4.93 0.70 N 118 1 "O4'" W C 62 ? ? "C1'" W C 62 ? ? N1 W C 62 ? ? 112.86 108.50 4.36 0.70 N 119 1 N1 W G 63 ? ? C6 W G 63 ? ? O6 W G 63 ? ? 125.41 119.90 5.51 0.60 N 120 1 C5 W G 63 ? ? C6 W G 63 ? ? O6 W G 63 ? ? 123.68 128.60 -4.92 0.60 N 121 1 "C5'" W A 64 ? ? "C4'" W A 64 ? ? "O4'" W A 64 ? ? 115.23 109.80 5.43 0.90 N 122 1 C4 W A 64 ? ? C5 W A 64 ? ? C6 W A 64 ? ? 120.79 117.00 3.79 0.50 N 123 1 N1 W A 64 ? ? C6 W A 64 ? ? N6 W A 64 ? ? 125.37 118.60 6.77 0.60 N 124 1 C5 W A 64 ? ? C6 W A 64 ? ? N6 W A 64 ? ? 118.34 123.70 -5.36 0.80 N 125 1 "O4'" W G 65 ? ? "C1'" W G 65 ? ? N9 W G 65 ? ? 113.16 108.50 4.66 0.70 N 126 1 N1 W G 65 ? ? C6 W G 65 ? ? O6 W G 65 ? ? 124.95 119.90 5.05 0.60 N 127 1 C5 W G 65 ? ? C6 W G 65 ? ? O6 W G 65 ? ? 123.92 128.60 -4.68 0.60 N 128 1 "O4'" W U 66 ? ? "C1'" W U 66 ? ? N1 W U 66 ? ? 113.25 108.50 4.75 0.70 N 129 1 "O4'" W C 67 ? ? "C1'" W C 67 ? ? N1 W C 67 ? ? 114.08 108.50 5.58 0.70 N 130 1 N3 W C 67 ? ? C4 W C 67 ? ? N4 W C 67 ? ? 122.71 118.00 4.71 0.70 N 131 1 "O4'" W C 68 ? ? "C1'" W C 68 ? ? N1 W C 68 ? ? 113.50 108.50 5.00 0.70 N 132 1 N3 W C 68 ? ? C4 W C 68 ? ? N4 W C 68 ? ? 122.43 118.00 4.43 0.70 N 133 1 N1 W G 69 ? ? C6 W G 69 ? ? O6 W G 69 ? ? 124.65 119.90 4.75 0.60 N 134 1 "C5'" W G 70 ? ? "C4'" W G 70 ? ? "C3'" W G 70 ? ? 128.34 116.00 12.34 1.60 N 135 1 N1 W G 70 ? ? C6 W G 70 ? ? O6 W G 70 ? ? 125.89 119.90 5.99 0.60 N 136 1 C5 W G 70 ? ? C6 W G 70 ? ? O6 W G 70 ? ? 123.30 128.60 -5.30 0.60 N 137 1 N1 W G 71 ? ? C6 W G 71 ? ? O6 W G 71 ? ? 124.93 119.90 5.03 0.60 N 138 1 C5 W G 71 ? ? C6 W G 71 ? ? O6 W G 71 ? ? 124.14 128.60 -4.46 0.60 N 139 1 "O4'" W C 72 ? ? "C1'" W C 72 ? ? N1 W C 72 ? ? 112.72 108.50 4.22 0.70 N 140 1 N3 W C 72 ? ? C4 W C 72 ? ? N4 W C 72 ? ? 123.19 118.00 5.19 0.70 N 141 1 "C3'" W C 72 ? ? "O3'" W C 72 ? ? P W A 73 ? ? 129.63 119.70 9.93 1.20 Y 142 1 "C5'" W A 73 ? ? "C4'" W A 73 ? ? "C3'" W A 73 ? ? 131.32 116.00 15.32 1.60 N 143 1 C4 W A 73 ? ? C5 W A 73 ? ? C6 W A 73 ? ? 120.29 117.00 3.29 0.50 N 144 1 N1 W A 73 ? ? C6 W A 73 ? ? N6 W A 73 ? ? 125.84 118.60 7.24 0.60 N 145 1 "C3'" W A 73 ? ? "O3'" W A 73 ? ? P W C 74 ? ? 127.03 119.70 7.33 1.20 Y 146 1 P W C 74 ? ? "O5'" W C 74 ? ? "C5'" W C 74 ? ? 136.13 120.90 15.23 1.60 N 147 1 "C4'" W C 74 ? ? "C3'" W C 74 ? ? "C2'" W C 74 ? ? 95.77 102.60 -6.83 1.00 N 148 1 "C3'" W C 74 ? ? "O3'" W C 74 ? ? P W C 75 ? ? 127.36 119.70 7.66 1.20 Y 149 1 "O4'" W C 75 ? ? "C1'" W C 75 ? ? N1 W C 75 ? ? 114.95 108.50 6.45 0.70 N 150 1 N3 W C 75 ? ? C4 W C 75 ? ? C5 W C 75 ? ? 119.12 121.90 -2.78 0.40 N 151 1 N3 W C 75 ? ? C4 W C 75 ? ? N4 W C 75 ? ? 122.45 118.00 4.45 0.70 N 152 1 C4 W A 76 ? ? C5 W A 76 ? ? C6 W A 76 ? ? 120.75 117.00 3.75 0.50 N 153 1 N1 W A 76 ? ? C6 W A 76 ? ? N6 W A 76 ? ? 127.39 118.60 8.79 0.60 N 154 1 C5 W A 76 ? ? C6 W A 76 ? ? N6 W A 76 ? ? 117.72 123.70 -5.98 0.80 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G W 6 ? ? 0.081 'SIDE CHAIN' 2 1 U W 8 ? ? 0.080 'SIDE CHAIN' 3 1 A W 14 ? ? 0.094 'SIDE CHAIN' 4 1 G W 15 ? ? 0.123 'SIDE CHAIN' 5 1 G W 18 ? ? 0.092 'SIDE CHAIN' 6 1 G W 19 ? ? 0.119 'SIDE CHAIN' 7 1 A W 21 ? ? 0.064 'SIDE CHAIN' 8 1 G W 27 ? ? 0.088 'SIDE CHAIN' 9 1 G W 28 ? ? 0.081 'SIDE CHAIN' 10 1 G W 29 ? ? 0.063 'SIDE CHAIN' 11 1 U W 39 ? ? 0.079 'SIDE CHAIN' 12 1 C W 43 ? ? 0.076 'SIDE CHAIN' 13 1 G W 44 ? ? 0.188 'SIDE CHAIN' 14 1 U W 51 ? ? 0.097 'SIDE CHAIN' 15 1 U W 55 ? ? 0.118 'SIDE CHAIN' 16 1 C W 56 ? ? 0.065 'SIDE CHAIN' 17 1 A W 73 ? ? 0.073 'SIDE CHAIN' 18 1 C W 74 ? ? 0.128 'SIDE CHAIN' 19 1 C W 75 ? ? 0.119 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 W G 18 ? P ? A G 18 P 2 1 Y 1 W G 18 ? OP1 ? A G 18 OP1 3 1 Y 1 W G 18 ? OP2 ? A G 18 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 W U 16 ? A U 16 2 1 Y 1 W C 17 ? A C 17 # _em_image_processing.id 1 _em_image_processing.image_recording_id . _em_image_processing.details ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied . _em_specimen.shadowing_applied . _em_specimen.staining_applied . _em_specimen.vitrification_applied . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4BYS 'double helix' 4BYS 'a-form double helix' 4BYS 'hairpin loop' 4BYS 'mismatched base pair' 4BYS 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 -0.798 -0.097 -0.268 12.542 0.000 -6.568 1 W_G1:C72_W W 1 ? W 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 0.893 -0.316 -0.268 -7.779 0.000 4.906 2 W_C2:G71_W W 2 ? W 71 ? 19 1 1 A C 3 1_555 A G 70 1_555 0.541 -0.335 0.466 -7.628 0.000 -4.894 3 W_C3:G70_W W 3 ? W 70 ? 19 1 1 A C 4 1_555 A G 69 1_555 -0.594 -0.235 0.518 9.233 0.000 -2.684 4 W_C4:G69_W W 4 ? W 69 ? 19 1 1 A G 5 1_555 A C 68 1_555 -0.575 -0.351 -0.059 0.744 0.000 -4.622 5 W_G5:C68_W W 5 ? W 68 ? 19 1 1 A G 6 1_555 A C 67 1_555 0.486 -0.370 0.677 -7.267 0.000 -4.905 6 W_G6:C67_W W 6 ? W 67 ? 19 1 1 A A 7 1_555 A U 66 1_555 -0.481 -0.220 -0.120 5.331 0.000 -8.676 7 W_A7:U66_W W 7 ? W 66 ? 20 1 1 A C 49 1_555 A G 65 1_555 0.626 0.097 0.041 3.973 0.000 6.499 8 W_C49:G65_W W 49 ? W 65 ? ? 1 1 A U 50 1_555 A A 64 1_555 1.078 -0.262 -0.052 1.084 0.000 -10.098 9 W_U50:A64_W W 50 ? W 64 ? 20 1 1 A U 51 1_555 A G 63 1_555 1.206 -0.237 0.439 -15.361 0.000 1.079 10 W_U51:G63_W W 51 ? W 63 ? 28 1 1 A G 52 1_555 A C 62 1_555 0.575 -0.280 0.780 -2.568 0.000 -6.703 11 W_G52:C62_W W 52 ? W 62 ? 19 1 1 A G 53 1_555 A C 61 1_555 -0.395 -0.311 0.760 -2.833 0.000 -2.999 12 W_G53:C61_W W 53 ? W 61 ? 19 1 1 A U 54 1_555 A A 58 1_555 4.754 -2.850 1.223 -2.705 0.000 -97.023 13 W_U54:A58_W W 54 ? W 58 ? 24 4 1 A G 19 1_555 A C 56 1_555 -1.177 0.626 -0.923 -35.184 0.000 26.162 14 W_G19:C56_W W 19 ? W 56 ? ? 1 1 A U 39 1_555 A A 31 1_555 0.113 -0.084 0.461 25.983 0.000 -16.459 15 W_U39:A31_W W 39 ? W 31 ? 20 1 1 A C 40 1_555 A G 30 1_555 0.583 -0.501 -1.226 26.185 0.000 -8.877 16 W_C40:G30_W W 40 ? W 30 ? 19 1 1 A C 41 1_555 A G 29 1_555 0.722 -0.476 -0.185 -2.248 0.000 -5.704 17 W_C41:G29_W W 41 ? W 29 ? 19 1 1 A C 42 1_555 A G 28 1_555 -0.365 -0.311 0.071 -3.259 0.000 -3.458 18 W_C42:G28_W W 42 ? W 28 ? 19 1 1 A C 43 1_555 A G 27 1_555 -0.494 -4.584 -1.640 3.316 0.000 81.446 19 W_C43:G27_W W 43 ? W 27 ? ? ? 1 A G 44 1_555 A A 26 1_555 0.601 1.641 -0.749 -9.226 0.000 -19.095 20 W_G44:A26_W W 44 ? W 26 ? 8 1 1 A G 10 1_555 A C 25 1_555 -0.785 -0.439 -1.026 -6.318 0.000 -4.875 21 W_G10:C25_W W 10 ? W 25 ? 19 1 1 A C 11 1_555 A G 24 1_555 -0.175 -0.338 -0.774 -0.725 0.000 -3.426 22 W_C11:G24_W W 11 ? W 24 ? 19 1 1 A C 13 1_555 A G 22 1_555 0.784 -0.474 0.810 -5.395 0.000 -7.699 23 W_C13:G22_W W 13 ? W 22 ? 19 1 1 A A 14 1_555 A U 8 1_555 -3.986 -1.789 0.083 -16.889 0.000 -107.470 24 W_A14:U8_W W 14 ? W 8 ? 24 4 1 A G 15 1_555 A C 48 1_555 -0.299 2.389 -0.251 2.819 0.000 147.210 25 W_G15:C48_W W 15 ? W 48 ? ? 2 1 A U 20 1_555 A U 59 1_555 0.445 2.753 0.991 16.260 0.000 -106.752 26 W_U20:U59_W W 20 ? W 59 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 0.867 -1.266 3.451 0.999 8.869 42.983 -2.556 -1.064 3.161 11.950 -1.346 43.857 1 WW_G1C2:G71C72_WW W 1 ? W 72 ? W 2 ? W 71 ? 1 A C 2 1_555 A G 71 1_555 A C 3 1_555 A G 70 1_555 0.306 -1.823 3.033 0.060 13.684 29.954 -5.123 -0.532 2.030 24.905 -0.109 32.867 2 WW_C2C3:G70G71_WW W 2 ? W 71 ? W 3 ? W 70 ? 1 A C 3 1_555 A G 70 1_555 A C 4 1_555 A G 69 1_555 0.636 -1.997 2.615 1.654 8.865 24.036 -6.252 -1.106 1.814 20.392 -3.806 25.648 3 WW_C3C4:G69G70_WW W 3 ? W 70 ? W 4 ? W 69 ? 1 A C 4 1_555 A G 69 1_555 A G 5 1_555 A C 68 1_555 -0.109 -1.648 3.075 0.711 13.891 31.592 -4.599 0.277 2.177 24.106 -1.234 34.447 4 WW_C4G5:C68G69_WW W 4 ? W 69 ? W 5 ? W 68 ? 1 A G 5 1_555 A C 68 1_555 A G 6 1_555 A C 67 1_555 -0.517 -1.755 3.228 -7.908 4.383 34.146 -3.527 -0.286 3.028 7.306 13.183 35.289 5 WW_G5G6:C67C68_WW W 5 ? W 68 ? W 6 ? W 67 ? 1 A G 6 1_555 A C 67 1_555 A A 7 1_555 A U 66 1_555 -0.070 -1.893 3.108 9.658 4.936 31.909 -4.000 1.549 2.661 8.670 -16.966 33.656 6 WW_G6A7:U66C67_WW W 6 ? W 67 ? W 7 ? W 66 ? 1 A A 7 1_555 A U 66 1_555 A C 49 1_555 A G 65 1_555 -0.027 -1.729 3.128 1.011 10.784 43.841 -3.123 0.116 2.651 14.187 -1.330 45.095 7 WW_A7C49:G65U66_WW W 7 ? W 66 ? W 49 ? W 65 ? 1 A C 49 1_555 A G 65 1_555 A U 50 1_555 A A 64 1_555 -1.715 -2.293 3.258 -2.609 5.079 33.230 -4.752 2.549 3.006 8.801 4.521 33.703 8 WW_C49U50:A64G65_WW W 49 ? W 65 ? W 50 ? W 64 ? 1 A U 50 1_555 A A 64 1_555 A U 51 1_555 A G 63 1_555 0.482 -2.248 3.497 2.961 -4.123 33.795 -3.099 -0.297 3.764 -7.043 -5.058 34.163 9 WW_U50U51:G63A64_WW W 50 ? W 64 ? W 51 ? W 63 ? 1 A U 51 1_555 A G 63 1_555 A G 52 1_555 A C 62 1_555 0.098 -1.606 2.487 3.179 8.724 26.657 -4.694 0.308 1.876 18.232 -6.643 28.201 10 WW_U51G52:C62G63_WW W 51 ? W 63 ? W 52 ? W 62 ? 1 A G 52 1_555 A C 62 1_555 A G 53 1_555 A C 61 1_555 0.896 -2.405 2.854 4.920 7.177 27.497 -6.123 -0.915 2.288 14.641 -10.038 28.816 11 WW_G52G53:C61C62_WW W 52 ? W 62 ? W 53 ? W 61 ? 1 A G 53 1_555 A C 61 1_555 A U 54 1_555 A A 58 1_555 -1.765 -3.238 3.379 -6.029 0.825 94.991 -2.209 1.084 3.438 0.559 4.086 95.139 12 WW_G53U54:A58C61_WW W 53 ? W 61 ? W 54 ? W 58 ? 1 A U 39 1_555 A A 31 1_555 A C 40 1_555 A G 30 1_555 0.033 -2.109 3.398 -0.139 -2.216 32.253 -3.372 -0.085 3.531 -3.983 0.250 32.327 13 WW_U39C40:G30A31_WW W 39 ? W 31 ? W 40 ? W 30 ? 1 A C 40 1_555 A G 30 1_555 A C 41 1_555 A G 29 1_555 -0.576 -2.696 4.070 -5.681 13.969 33.493 -6.405 0.055 2.819 22.855 9.295 36.642 14 WW_C40C41:G29G30_WW W 40 ? W 30 ? W 41 ? W 29 ? 1 A C 41 1_555 A G 29 1_555 A C 42 1_555 A G 28 1_555 -0.364 -1.767 3.104 0.265 2.342 28.431 -4.080 0.794 2.949 4.758 -0.539 28.526 15 WW_C41C42:G28G29_WW W 41 ? W 29 ? W 42 ? W 28 ? 1 A C 42 1_555 A G 28 1_555 A C 43 1_555 A G 27 1_555 2.069 3.161 0.892 168.463 -16.656 96.554 1.634 -0.521 1.828 -8.461 -85.579 172.874 16 WW_C42C43:G27G28_WW W 42 ? W 28 ? W 43 ? W 27 ? 1 A C 43 1_555 A G 27 1_555 A G 44 1_555 A A 26 1_555 -0.362 4.376 2.889 -123.157 103.782 -39.541 -2.436 -0.446 -1.920 -55.914 -66.352 -162.180 17 WW_C43G44:A26G27_WW W 43 ? W 27 ? W 44 ? W 26 ? 1 A G 44 1_555 A A 26 1_555 A G 10 1_555 A C 25 1_555 -2.462 -2.987 3.797 19.419 19.334 55.421 -3.772 3.261 1.878 19.521 -19.607 61.341 18 WW_G44G10:C25A26_WW W 44 ? W 26 ? W 10 ? W 25 ? 1 A G 10 1_555 A C 25 1_555 A C 11 1_555 A G 24 1_555 -0.611 -1.368 3.087 -2.168 3.278 34.861 -2.728 0.711 2.981 5.450 3.605 35.075 19 WW_G10C11:G24C25_WW W 10 ? W 25 ? W 11 ? W 24 ? 1 A C 11 1_555 A G 24 1_555 A C 13 1_555 A G 22 1_555 1.453 -2.954 6.401 4.940 14.606 67.867 -3.599 -0.937 5.821 12.912 -4.368 69.392 20 WW_C11C13:G22G24_WW W 11 ? W 24 ? W 13 ? W 22 ? 1 A C 13 1_555 A G 22 1_555 A A 14 1_555 A U 8 1_555 -2.073 -0.226 3.944 13.517 -0.399 59.598 -0.201 2.784 3.447 -0.396 -13.413 60.975 21 WW_C13A14:U8G22_WW W 13 ? W 22 ? W 14 ? W 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 48 1_555 1.700 -2.392 2.870 -7.116 3.279 -76.472 1.839 1.180 3.079 -2.643 -5.735 -76.811 22 WW_A14G15:C48U8_WW W 14 ? W 8 ? W 15 ? W 48 ? 1 A G 15 1_555 A C 48 1_555 A U 20 1_555 A U 59 1_555 1.352 -2.884 3.878 30.578 7.855 -144.782 1.464 0.874 3.813 -4.110 16.000 -146.151 23 WW_G15U20:U59C48_WW W 15 ? W 48 ? W 20 ? W 59 ? #