HEADER RIBOSOME 20-JUL-13 4BYX OBSLTE 10-DEC-14 4BYX 4V8Z TITLE CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET EUKARYOTIC TITLE 2 TRANSLATION INITIATION COMPLEX SPLIT 4BYT 4BYU 4BYV 4BYW 4BYX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE COMPND 3 TRANSLATION INITIATION FACTOR IF-2; COMPND 4 CHAIN: V; COMPND 5 SYNONYM: EIF-5B, TRANSLATION INITIATION FACTOR IF-2,; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: EUKARYOTIC RIBOSOMAL PI TRNA; COMPND 9 CHAIN: W; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-R(*AP*UP*GP)-3'; COMPND 12 CHAIN: X SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, METHANOTHERMOBACTER SOURCE 3 THERMAUTOTROPHICUS; SOURCE 4 ORGANISM_TAXID: 4932, 145262; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 10 ORGANISM_TAXID: 4932; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932 KEYWDS RIBOSOME, SINGLE PARTICLE ANALYSIS EXPDTA ELECTRON MICROSCOPY AUTHOR I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH,V.RAMAKRISHNAN, AUTHOR 2 S.H.W.SCHERES REVDAT 3 10-DEC-14 4BYX 1 OBSLTE REVDAT 2 27-NOV-13 4BYX 1 JRNL REVDAT 1 20-NOV-13 4BYX 0 JRNL AUTH I.S.FERNANDEZ,X.C.BAI,T.HUSSAIN,A.C.KELLEY,J.R.LORSCH, JRNL AUTH 2 V.RAMAKRISHNAN,S.H.SCHERES JRNL TITL MOLECULAR ARCHITECTURE OF A EUKARYOTIC TRANSLATIONAL JRNL TITL 2 INITIATION COMPLEX. JRNL REF SCIENCE V. 342 40585 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 24200810 JRNL DOI 10.1126/SCIENCE.1240585 REMARK 2 REMARK 2 RESOLUTION. 6.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND3, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : MDFF REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 1.77 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 6.6 REMARK 3 NUMBER OF PARTICLES : 5143 REMARK 3 CTF CORRECTION METHOD : EACH PARTICLE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: CROSS-CORRELATION REMARK 3 BETWEEN CRYO-EM MAP AND CRYSTAL STRUCTURE REMARK 3 REMARK 3 OTHER DETAILS: USE A NEWLY DEVELOPED STATISTICAL MOVIE PROCESSING REMARK 3 APPROACH TO COMPENSATE FOR BEAM-INDUCED MOVEMENT. SUBMISSION REMARK 3 BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2422. (DEPOSITION ID: REMARK 3 11817). REMARK 4 REMARK 4 4BYX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY WITH OTHER SPLIT ENTRIES HAVE BEEN CONSOLIDATED INTO A REMARK 5 COMBINED FILE FOR COMPLETE REPRESENTATION. NO COORDINATES HAVE BEEN REMARK 5 CHANGED. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-13. REMARK 100 THE PDBE ID CODE IS EBI-57758. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : NULL REMARK 245 NAME OF SAMPLE : 80S-EIF5B-MET-ITRNAMET REMARK 245 EUKARYOTIC TRANSLATION REMARK 245 INITIATION COMPLEX WITH TRNA IN REMARK 245 THE PI-SITE AND DENSITY FOR ALL REMARK 245 FOUR DOMAINS OF EIF5B REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.3 REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : VITRIFICATION 1 -- CRYOGEN- REMARK 245 ETHANE, HUMIDITY- 100, REMARK 245 TEMPERATURE- 90, INSTRUMENT- FEI REMARK 245 VITROBOT MARK II, METHOD- BLOT REMARK 245 2.5 SECONDS BEFORE PLUNGING, REMARK 245 SAMPLE BUFFER : 3MM HEPES-KOH, 6.6 MM TRIS- REMARK 245 ACETATE PH 7.2, 3 MM NH4CL, 6.6 REMARK 245 MM NH4- ACETATE, 48 MM K- REMARK 245 ACETATE, 4 MM MG-ACETATE, 2. 4 REMARK 245 MM DTT REMARK 245 PH : 7.2 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 15-JAN-13 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1012 REMARK 245 TEMPERATURE (KELVIN) : 85 REMARK 245 MICROSCOPE MODEL : OTHER REMARK 245 DETECTOR TYPE : FEI FALCON (BACKTHINNED) REMARK 245 MINIMUM DEFOCUS (NM) : 1900 REMARK 245 MAXIMUM DEFOCUS (NM) : 3900 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 16 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : 79096 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, W, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU V 341 REMARK 465 THR V 342 REMARK 465 GLY V 343 REMARK 465 LEU V 344 REMARK 465 LEU V 345 REMARK 465 ASP V 346 REMARK 465 SER V 347 REMARK 465 VAL V 348 REMARK 465 ASP V 349 REMARK 465 THR V 350 REMARK 465 GLU V 560 REMARK 465 GLN V 561 REMARK 465 LEU V 562 REMARK 465 SER V 563 REMARK 465 GLY V 564 REMARK 465 ASP V 565 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP V 340 CA C O CB CG OD1 OD2 REMARK 470 LYS V 559 CA C O CB CG CD CE NZ REMARK 470 G W 1 P OP1 OP2 REMARK 470 A X 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C THR V 16 C3B GCP V 1587 1.68 REMARK 500 C THR V 16 PB GCP V 1587 2.13 REMARK 500 O THR V 16 C3B GCP V 1587 1.73 REMARK 500 O THR V 16 PB GCP V 1587 1.69 REMARK 500 O THR V 16 O1B GCP V 1587 1.60 REMARK 500 CG2 THR V 16 C5' GCP V 1587 1.68 REMARK 500 HB THR V 16 O3A GCP V 1587 1.54 REMARK 500 HG23 THR V 16 C5' GCP V 1587 0.76 REMARK 500 HG23 THR V 16 O5' GCP V 1587 1.26 REMARK 500 N GLY V 17 PG GCP V 1587 2.05 REMARK 500 N GLY V 17 O1G GCP V 1587 2.10 REMARK 500 N GLY V 17 C3B GCP V 1587 1.57 REMARK 500 CA GLY V 17 PG GCP V 1587 0.90 REMARK 500 CA GLY V 17 O1G GCP V 1587 0.92 REMARK 500 CA GLY V 17 C3B GCP V 1587 1.64 REMARK 500 CA GLY V 17 O3G GCP V 1587 2.17 REMARK 500 C GLY V 17 PG GCP V 1587 1.38 REMARK 500 C GLY V 17 O1G GCP V 1587 2.00 REMARK 500 C GLY V 17 C3B GCP V 1587 1.58 REMARK 500 C GLY V 17 O3G GCP V 1587 1.16 REMARK 500 O GLY V 17 PG GCP V 1587 1.98 REMARK 500 O GLY V 17 O3G GCP V 1587 0.74 REMARK 500 HA2 GLY V 17 PG GCP V 1587 0.73 REMARK 500 HA2 GLY V 17 O1G GCP V 1587 1.47 REMARK 500 HA2 GLY V 17 O2G GCP V 1587 1.22 REMARK 500 HA3 GLY V 17 O1G GCP V 1587 0.41 REMARK 500 N LYS V 18 C3B GCP V 1587 1.44 REMARK 500 N LYS V 18 PB GCP V 1587 2.03 REMARK 500 N LYS V 18 O3G GCP V 1587 2.11 REMARK 500 N LYS V 18 O2B GCP V 1587 1.98 REMARK 500 CA LYS V 18 O2B GCP V 1587 1.38 REMARK 500 C LYS V 18 PB GCP V 1587 1.83 REMARK 500 C LYS V 18 O2B GCP V 1587 1.23 REMARK 500 C LYS V 18 O3A GCP V 1587 1.75 REMARK 500 C LYS V 18 PA GCP V 1587 1.87 REMARK 500 C LYS V 18 O2A GCP V 1587 2.07 REMARK 500 O LYS V 18 PB GCP V 1587 2.09 REMARK 500 O LYS V 18 O3A GCP V 1587 1.10 REMARK 500 O LYS V 18 PA GCP V 1587 0.82 REMARK 500 O LYS V 18 O2A GCP V 1587 1.86 REMARK 500 O LYS V 18 O1A GCP V 1587 1.44 REMARK 500 H LYS V 18 C3B GCP V 1587 1.38 REMARK 500 HA LYS V 18 O2B GCP V 1587 1.34 REMARK 500 N THR V 19 O2B GCP V 1587 1.56 REMARK 500 N THR V 19 O2A GCP V 1587 2.15 REMARK 500 CA THR V 19 O2A GCP V 1587 2.07 REMARK 500 C THR V 19 O2A GCP V 1587 1.84 REMARK 500 N LYS V 20 O2A GCP V 1587 2.15 REMARK 500 CG LYS V 20 C8 GCP V 1587 1.88 REMARK 500 CG LYS V 20 C2' GCP V 1587 1.80 REMARK 500 REMARK 500 THIS ENTRY HAS 270 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU V 63 N GLU V 63 CA 1.381 REMARK 500 TRP V 210 CD2 TRP V 210 CE2 0.396 REMARK 500 TRP V 210 CD2 TRP V 210 CE3 0.521 REMARK 500 TRP V 210 CE2 TRP V 210 CZ2 0.543 REMARK 500 TRP V 210 CE3 TRP V 210 CZ3 0.448 REMARK 500 TRP V 210 CZ2 TRP V 210 CH2 0.454 REMARK 500 TRP V 210 CZ3 TRP V 210 CH2 0.386 REMARK 500 C W 3 C2' C W 3 C1' -0.052 REMARK 500 G W 5 C2 G W 5 N3 0.054 REMARK 500 G W 6 N7 G W 6 C5 -0.037 REMARK 500 A W 7 O3' U W 8 P -0.079 REMARK 500 C W 11 P C W 11 O5' -0.062 REMARK 500 U W 12 C2' U W 12 C1' -0.075 REMARK 500 A W 14 N7 A W 14 C5 -0.046 REMARK 500 G W 15 C2' G W 15 C1' -0.051 REMARK 500 G W 15 N9 G W 15 C4 -0.059 REMARK 500 U W 16 P U W 16 O5' -0.067 REMARK 500 G W 19 C6 G W 19 N1 0.049 REMARK 500 G W 19 P G W 19 O5' -0.103 REMARK 500 A W 21 C2' A W 21 C1' -0.059 REMARK 500 C W 25 C2' C W 25 C1' -0.063 REMARK 500 A W 26 C2' A W 26 C1' -0.061 REMARK 500 G W 28 C2' G W 28 C1' -0.064 REMARK 500 A W 37 C2' A W 37 C1' -0.071 REMARK 500 A W 37 N7 A W 37 C5 -0.038 REMARK 500 A W 38 C8 A W 38 N7 -0.042 REMARK 500 A W 38 N7 A W 38 C5 -0.060 REMARK 500 C W 40 C2' C W 40 C1' -0.052 REMARK 500 C W 42 C2' C W 42 C1' -0.057 REMARK 500 C W 42 O3' C W 43 P -0.086 REMARK 500 C W 49 C2' C W 49 C1' -0.049 REMARK 500 G W 53 C2' G W 53 C1' -0.053 REMARK 500 A W 58 N7 A W 58 C5 -0.038 REMARK 500 U W 59 C2' U W 59 C1' -0.067 REMARK 500 A W 64 N7 A W 64 C5 -0.046 REMARK 500 G W 65 C2' G W 65 C1' -0.049 REMARK 500 C W 67 C1' C W 67 N1 0.095 REMARK 500 C W 67 C3' C W 67 O3' 0.087 REMARK 500 C W 72 C4' C W 72 C3' 0.076 REMARK 500 A X 1 C2' A X 1 C1' -0.054 REMARK 500 G X 3 P G X 3 O5' -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR V 16 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 LYS V 18 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 GLU V 63 CB - CA - C ANGL. DEV. = -22.4 DEGREES REMARK 500 GLU V 63 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 GLU V 63 N - CA - CB ANGL. DEV. = 19.5 DEGREES REMARK 500 GLU V 63 C - N - CA ANGL. DEV. = 21.2 DEGREES REMARK 500 SER V 82 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 PHE V 83 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR V 136 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 TRP V 210 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP V 210 CG - CD1 - NE1 ANGL. DEV. = 7.3 DEGREES REMARK 500 TRP V 210 NE1 - CE2 - CZ2 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLY V 244 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 MET V 373 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 VAL V 385 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 SER V 386 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 ALA V 396 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP V 400 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 TYR V 435 CA - CB - CG ANGL. DEV. = 19.1 DEGREES REMARK 500 TYR V 435 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR V 435 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ILE V 469 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 PHE V 474 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 GLN V 476 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 LYS V 478 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 TYR V 495 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR V 495 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ALA V 534 N - CA - CB ANGL. DEV. = 10.2 DEGREES REMARK 500 G W 1 N1 - C6 - O6 ANGL. DEV. = 4.5 DEGREES REMARK 500 G W 1 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 C W 2 N3 - C4 - C5 ANGL. DEV. = -2.7 DEGREES REMARK 500 C W 2 N3 - C4 - N4 ANGL. DEV. = 4.5 DEGREES REMARK 500 C W 2 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 C W 3 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 C W 4 C6 - N1 - C2 ANGL. DEV. = -2.4 DEGREES REMARK 500 G W 5 C5 - C6 - O6 ANGL. DEV. = -10.2 DEGREES REMARK 500 G W 5 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES REMARK 500 G W 5 N1 - C6 - O6 ANGL. DEV. = 8.3 DEGREES REMARK 500 G W 5 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 G W 6 C5 - C6 - N1 ANGL. DEV. = -3.0 DEGREES REMARK 500 G W 6 C5 - C6 - O6 ANGL. DEV. = -4.5 DEGREES REMARK 500 G W 6 C6 - C5 - N7 ANGL. DEV. = -4.1 DEGREES REMARK 500 G W 6 N1 - C6 - O6 ANGL. DEV. = 7.0 DEGREES REMARK 500 A W 7 C4 - C5 - C6 ANGL. DEV. = 3.1 DEGREES REMARK 500 A W 7 N1 - C6 - N6 ANGL. DEV. = 5.7 DEGREES REMARK 500 U W 8 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 U W 8 C3' - O3' - P ANGL. DEV. = 19.8 DEGREES REMARK 500 A W 9 C4 - C5 - C6 ANGL. DEV. = 3.1 DEGREES REMARK 500 A W 9 N1 - C6 - N6 ANGL. DEV. = 6.3 DEGREES REMARK 500 G W 10 C5 - C6 - O6 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 221 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HSO V 13 162.56 86.38 REMARK 500 THR V 16 77.97 -176.26 REMARK 500 GLN V 31 72.13 -111.61 REMARK 500 GLN V 41 -145.61 -74.05 REMARK 500 PRO V 48 152.29 -44.98 REMARK 500 THR V 56 140.14 166.02 REMARK 500 ALA V 60 -32.71 157.26 REMARK 500 GLU V 61 -4.48 -169.15 REMARK 500 THR V 66 10.33 -160.29 REMARK 500 LEU V 73 55.60 90.27 REMARK 500 THR V 77 -32.47 -149.49 REMARK 500 SER V 82 -122.40 28.58 REMARK 500 PHE V 83 70.69 94.50 REMARK 500 SER V 88 -103.23 67.59 REMARK 500 CYS V 94 -175.25 47.38 REMARK 500 ASN V 95 -151.84 53.95 REMARK 500 HSO V 105 -34.40 -140.39 REMARK 500 GLN V 109 -79.47 -57.80 REMARK 500 LYS V 131 142.81 70.71 REMARK 500 ILE V 132 22.59 -148.17 REMARK 500 ARG V 134 46.71 -96.19 REMARK 500 TYR V 136 137.25 -31.65 REMARK 500 ASP V 137 -14.07 66.66 REMARK 500 TRP V 138 166.23 -42.02 REMARK 500 SER V 154 172.95 -52.88 REMARK 500 ASN V 185 132.53 -33.93 REMARK 500 ASN V 187 132.80 46.06 REMARK 500 LYS V 190 -60.55 -93.35 REMARK 500 GLU V 203 103.67 -161.77 REMARK 500 SER V 221 -85.11 -147.91 REMARK 500 MET V 267 -10.05 -162.19 REMARK 500 THR V 280 134.88 99.49 REMARK 500 PRO V 281 -150.21 -83.03 REMARK 500 PRO V 283 -137.65 -72.61 REMARK 500 ARG V 285 118.11 79.70 REMARK 500 GLU V 286 98.57 177.81 REMARK 500 ARG V 288 7.51 -159.45 REMARK 500 LYS V 290 -178.03 51.18 REMARK 500 SER V 291 158.92 -48.63 REMARK 500 GLU V 313 -96.44 -131.97 REMARK 500 VAL V 353 119.88 71.37 REMARK 500 ASP V 358 -112.05 -104.78 REMARK 500 THR V 359 -155.66 -79.75 REMARK 500 VAL V 385 138.83 -23.54 REMARK 500 GLU V 399 142.99 66.15 REMARK 500 ASP V 400 124.64 83.63 REMARK 500 ASP V 425 65.22 62.79 REMARK 500 ASN V 432 -30.26 -154.83 REMARK 500 VAL V 433 87.63 -59.02 REMARK 500 ILE V 461 26.09 -158.81 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE V 47 PRO V 48 147.71 REMARK 500 LEU V 227 SER V 228 -121.27 REMARK 500 ILE V 550 PRO V 551 135.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG V 4 0.08 SIDE CHAIN REMARK 500 TYR V 62 0.16 SIDE CHAIN REMARK 500 TYR V 165 0.07 SIDE CHAIN REMARK 500 TRP V 210 0.13 SIDE CHAIN REMARK 500 ARG V 219 0.08 SIDE CHAIN REMARK 500 ARG V 320 0.08 SIDE CHAIN REMARK 500 TYR V 374 0.10 SIDE CHAIN REMARK 500 TYR V 403 0.13 SIDE CHAIN REMARK 500 TRP V 444 0.08 SIDE CHAIN REMARK 500 ARG V 523 0.14 SIDE CHAIN REMARK 500 TYR V 536 0.10 SIDE CHAIN REMARK 500 TYR V 547 0.06 SIDE CHAIN REMARK 500 TYR V 555 0.11 SIDE CHAIN REMARK 500 C W 4 0.13 SIDE CHAIN REMARK 500 G W 6 0.15 SIDE CHAIN REMARK 500 A W 7 0.07 SIDE CHAIN REMARK 500 U W 8 0.09 SIDE CHAIN REMARK 500 U W 12 0.06 SIDE CHAIN REMARK 500 A W 14 0.09 SIDE CHAIN REMARK 500 G W 15 0.09 SIDE CHAIN REMARK 500 U W 16 0.11 SIDE CHAIN REMARK 500 G W 18 0.07 SIDE CHAIN REMARK 500 G W 19 0.09 SIDE CHAIN REMARK 500 A W 21 0.13 SIDE CHAIN REMARK 500 A W 26 0.08 SIDE CHAIN REMARK 500 G W 28 0.09 SIDE CHAIN REMARK 500 G W 30 0.09 SIDE CHAIN REMARK 500 A W 31 0.06 SIDE CHAIN REMARK 500 U W 33 0.25 SIDE CHAIN REMARK 500 C W 40 0.09 SIDE CHAIN REMARK 500 G W 44 0.09 SIDE CHAIN REMARK 500 U W 45 0.10 SIDE CHAIN REMARK 500 U W 47 0.08 SIDE CHAIN REMARK 500 C W 48 0.10 SIDE CHAIN REMARK 500 U W 55 0.09 SIDE CHAIN REMARK 500 U W 60 0.17 SIDE CHAIN REMARK 500 G W 63 0.07 SIDE CHAIN REMARK 500 G W 65 0.07 SIDE CHAIN REMARK 500 U W 66 0.06 SIDE CHAIN REMARK 500 C W 67 0.21 SIDE CHAIN REMARK 500 C W 68 0.12 SIDE CHAIN REMARK 500 G W 70 0.16 SIDE CHAIN REMARK 500 G W 71 0.08 SIDE CHAIN REMARK 500 C W 74 0.10 SIDE CHAIN REMARK 500 C W 75 0.11 SIDE CHAIN REMARK 500 U X 2 0.08 SIDE CHAIN REMARK 500 G X 3 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP V 2 -10.34 REMARK 500 VAL V 375 10.06 REMARK 500 ILE V 395 11.72 REMARK 500 SER V 465 10.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TYR V 62 24.5 L L OUTSIDE RANGE REMARK 500 GLU V 63 18.5 L L OUTSIDE RANGE REMARK 500 CYS V 94 24.4 L L OUTSIDE RANGE REMARK 500 ASP V 137 24.8 L L OUTSIDE RANGE REMARK 500 VAL V 385 20.9 L L OUTSIDE RANGE REMARK 500 LEU V 468 23.8 L L OUTSIDE RANGE REMARK 500 LYS V 471 23.4 L L OUTSIDE RANGE REMARK 500 PHE V 474 21.8 L L OUTSIDE RANGE REMARK 500 GLU V 509 23.9 L L OUTSIDE RANGE REMARK 500 ILE V 580 23.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "VB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GCP V1587 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-2422 RELATED DB: EMDB REMARK 900 MOLECULAR ARCHITECTURE OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 RELATED ID: 4BYL RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYN RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYO RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYP RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYQ RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYR RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYS RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYT RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYU RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYV RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX REMARK 900 RELATED ID: 4BYW RELATED DB: PDB REMARK 900 CRYO-EM RECONSTRUCTION OF THE 80S-EIF5B-MET-ITRNAMET REMARK 900 EUKARYOTIC TRANSLATION INITIATION COMPLEX DBREF 4BYX V 1 339 UNP P39730 IF2P_YEAST 401 739 DBREF 4BYX V 351 586 UNP O26359 IF2P_METTH 351 586 DBREF 4BYX W 1 76 PDB 4BYX 4BYX 1 76 DBREF 4BYX X 1 3 PDB 4BYX 4BYX 1 3 SEQADV 4BYX ASP V 340 UNP P39730 LINKER SEQADV 4BYX LEU V 341 UNP P39730 LINKER SEQADV 4BYX THR V 342 UNP P39730 LINKER SEQADV 4BYX GLY V 343 UNP P39730 LINKER SEQADV 4BYX LEU V 344 UNP P39730 LINKER SEQADV 4BYX LEU V 345 UNP P39730 LINKER SEQADV 4BYX ASP V 346 UNP P39730 LINKER SEQADV 4BYX SER V 347 UNP P39730 LINKER SEQADV 4BYX VAL V 348 UNP P39730 LINKER SEQADV 4BYX ASP V 349 UNP P39730 LINKER SEQADV 4BYX THR V 350 UNP P39730 LINKER SEQRES 1 V 586 LYS ASP LEU ARG SER PRO ILE CYS CYS ILE LEU GLY HSO SEQRES 2 V 586 VAL ASP THR GLY LYS THR LYS LEU LEU ASP LYS ILE ARG SEQRES 3 V 586 GLN THR ASN VAL GLN GLY GLY GLU ALA GLY GLY ILE THR SEQRES 4 V 586 GLN GLN ILE GLY ALA THR TYR PHE PRO ILE ASP ALA ILE SEQRES 5 V 586 LYS ALA LYS THR LYS VAL MET ALA GLU TYR GLU LYS GLN SEQRES 6 V 586 THR PHE ASP VAL PRO GLY LEU LEU VAL ILE ASP THR PRO SEQRES 7 V 586 GLY HSO GLU SER PHE SER ASN LEU ARG SER ARG GLY SER SEQRES 8 V 586 SER LEU CYS ASN ILE ALA ILE LEU VAL ILE ASP ILE MET SEQRES 9 V 586 HSO GLY LEU GLU GLN GLN THR ILE GLU SER ILE LYS LEU SEQRES 10 V 586 LEU ARG ASP ARG LYS ALA PRO PHE VAL VAL ALA LEU ASN SEQRES 11 V 586 LYS ILE ASP ARG LEU TYR ASP TRP LYS ALA ILE PRO ASN SEQRES 12 V 586 ASN SER PHE ARG ASP SER PHE ALA LYS GLN SER ARG ALA SEQRES 13 V 586 VAL GLN GLU GLU PHE GLN SER ARG TYR SER LYS ILE GLN SEQRES 14 V 586 LEU GLU LEU ALA GLU GLN GLY LEU ASN SER GLU LEU TYR SEQRES 15 V 586 PHE GLN ASN LYS ASN MET SER LYS TYR VAL SER ILE VAL SEQRES 16 V 586 PRO THR SER ALA VAL THR GLY GLU GLY VAL PRO ASP LEU SEQRES 17 V 586 LEU TRP LEU LEU LEU GLU LEU THR GLN LYS ARG MET SER SEQRES 18 V 586 LYS GLN LEU MET TYR LEU SER HSO VAL GLU ALA THR ILE SEQRES 19 V 586 LEU GLU VAL LYS VAL VAL GLU GLY PHE GLY THR THR ILE SEQRES 20 V 586 ASP VAL ILE LEU SER ASN GLY TYR LEU ARG GLU GLY ASP SEQRES 21 V 586 ARG ILE VAL LEU CYS GLY MET ASN GLY PRO ILE VAL THR SEQRES 22 V 586 ASN ILE ARG ALA LEU LEU THR PRO GLN PRO LEU ARG GLU SEQRES 23 V 586 LEU ARG LEU LYS SER GLU TYR VAL HSO HSO LYS GLU VAL SEQRES 24 V 586 LYS ALA ALA LEU GLY VAL LYS ILE ALA ALA ASN ASP LEU SEQRES 25 V 586 GLU LYS ALA VAL SER GLY SER ARG LEU LEU VAL VAL GLY SEQRES 26 V 586 PRO GLU ASP ASP GLU ASP GLU LEU MET ASP ASP VAL MET SEQRES 27 V 586 ASP ASP LEU THR GLY LEU LEU ASP SER VAL ASP THR ALA SEQRES 28 V 586 GLY VAL VAL VAL LYS ALA ASP THR LEU GLY SER LEU GLU SEQRES 29 V 586 ALA VAL VAL LYS ILE LEU ARG ASP MET TYR VAL PRO ILE SEQRES 30 V 586 LYS VAL ALA ASP ILE GLY ASP VAL SER ARG ARG ASP VAL SEQRES 31 V 586 VAL ASN ALA GLY ILE ALA LEU GLN GLU ASP ARG VAL TYR SEQRES 32 V 586 GLY ALA ILE ILE ALA PHE ASN VAL LYS VAL ILE PRO SER SEQRES 33 V 586 ALA ALA GLN GLU LEU LYS ASN SER ASP ILE LYS LEU PHE SEQRES 34 V 586 GLN GLY ASN VAL ILE TYR ARG LEU MET GLU GLU TYR GLU SEQRES 35 V 586 GLU TRP VAL ARG GLY ILE GLU GLU GLU LYS LYS LYS LYS SEQRES 36 V 586 TRP MET GLU ALA ILE ILE LYS PRO ALA SER ILE ARG LEU SEQRES 37 V 586 ILE PRO LYS LEU VAL PHE ARG GLN SER LYS PRO ALA ILE SEQRES 38 V 586 GLY GLY VAL GLU VAL LEU THR GLY VAL ILE ARG GLN GLY SEQRES 39 V 586 TYR PRO LEU MET ASN ASP ASP GLY GLU THR VAL GLY THR SEQRES 40 V 586 VAL GLU SER MET GLN ASP LYS GLY GLU ASN LEU LYS SER SEQRES 41 V 586 ALA SER ARG GLY GLN LYS VAL ALA MET ALA ILE LYS ASP SEQRES 42 V 586 ALA VAL TYR GLY LYS THR ILE HSO GLU GLY ASP THR LEU SEQRES 43 V 586 TYR VAL ASP ILE PRO GLU ASN HSO TYR HSO ILE LEU LYS SEQRES 44 V 586 GLU GLN LEU SER GLY ASP LEU THR ASP GLU GLU LEU ASP SEQRES 45 V 586 LEU MET ASP LYS ILE ALA GLU ILE LYS ARG LYS LYS ASN SEQRES 46 V 586 PRO SEQRES 1 W 76 G C C C G G A U A G C U C SEQRES 2 W 76 A G U C G G U A G A G C A SEQRES 3 W 76 G G G G A U U C A U A A U SEQRES 4 W 76 C C C C G U G U C C U U G SEQRES 5 W 76 G U U C G A U U C C G A G SEQRES 6 W 76 U C C G G G C A C C A SEQRES 1 X 3 A U G MODRES 4BYX HSO V 13 HIS HISTIDINOL MODRES 4BYX HSO V 80 HIS HISTIDINOL MODRES 4BYX HSO V 105 HIS HISTIDINOL MODRES 4BYX HSO V 229 HIS HISTIDINOL MODRES 4BYX HSO V 295 HIS HISTIDINOL MODRES 4BYX HSO V 296 HIS HISTIDINOL MODRES 4BYX HSO V 541 HIS HISTIDINOL MODRES 4BYX HSO V 554 HIS HISTIDINOL MODRES 4BYX HSO V 556 HIS HISTIDINOL HET HSO V 13 17 HET HSO V 80 17 HET HSO V 105 17 HET HSO V 229 17 HET HSO V 295 17 HET HSO V 296 17 HET HSO V 541 17 HET HSO V 554 17 HET HSO V 556 17 HET GCP V1587 32 HETNAM HSO HISTIDINOL HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER FORMUL 1 HSO 9(C6 H10 N3 O 1+) FORMUL 4 GCP C11 H18 N5 O13 P3 HELIX 1 1 LYS V 20 GLN V 31 1 12 HELIX 2 2 PRO V 48 LYS V 55 1 8 HELIX 3 3 GLN V 110 LYS V 122 1 13 HELIX 4 4 SER V 145 GLN V 153 1 9 HELIX 5 5 SER V 154 LEU V 177 1 24 HELIX 6 6 GLY V 204 MET V 220 1 17 HELIX 7 7 SER V 221 LEU V 224 5 4 HELIX 8 8 GLY V 325 ASP V 339 1 15 HELIX 9 9 LEU V 360 ASP V 372 1 13 HELIX 10 10 SER V 386 ILE V 395 1 10 HELIX 11 11 ILE V 414 LYS V 422 1 9 HELIX 12 12 VAL V 433 GLU V 458 1 26 HELIX 13 13 GLU V 552 ILE V 557 1 6 HELIX 14 14 THR V 567 LYS V 584 1 18 SHEET 1 VA 7 ALA V 44 TYR V 46 0 SHEET 2 VA 7 LEU V 73 ASP V 76 -1 O VAL V 74 N THR V 45 SHEET 3 VA 7 CYS V 8 LEU V 11 1 O CYS V 8 N ILE V 75 SHEET 4 VA 7 ILE V 96 LEU V 99 1 O ILE V 96 N CYS V 9 SHEET 5 VA 7 VAL V 126 LEU V 129 1 O VAL V 126 N LEU V 99 SHEET 6 VA 7 VAL V 192 PRO V 196 1 O SER V 193 N VAL V 127 SHEET 7 VA 7 SER V 179 LEU V 181 1 O GLU V 180 N ILE V 194 SHEET 1 VB 8 GLU V 231 VAL V 239 0 SHEET 2 VB 8 THR V 245 ASN V 253 -1 O THR V 246 N LYS V 238 SHEET 3 VB 8 LEU V 303 ALA V 309 -1 O LEU V 303 N LEU V 251 SHEET 4 VB 8 PRO V 270 LEU V 279 -1 N ARG V 276 O ALA V 308 SHEET 5 VB 8 ARG V 261 CYS V 265 -1 O ILE V 262 N THR V 273 SHEET 6 VB 8 ARG V 320 VAL V 323 -1 O LEU V 322 N VAL V 263 SHEET 7 VB 8 GLU V 231 VAL V 239 0 SHEET 1 VC 2 TYR V 255 ARG V 257 0 SHEET 2 VC 2 GLU V 298 LYS V 300 -1 O VAL V 299 N LEU V 256 SHEET 1 VD 4 VAL V 379 ILE V 382 0 SHEET 2 VD 4 VAL V 354 ALA V 357 1 O VAL V 355 N ASP V 381 SHEET 3 VD 4 ALA V 405 ALA V 408 1 O ALA V 405 N VAL V 354 SHEET 4 VD 4 LYS V 427 GLN V 430 1 O LYS V 427 N ILE V 406 SHEET 1 VE 2 ALA V 464 ARG V 467 0 SHEET 2 VE 2 ALA V 480 GLY V 489 -1 O GLU V 485 N ARG V 467 SHEET 1 VF 2 VAL V 473 ARG V 475 0 SHEET 2 VF 2 ALA V 480 GLY V 489 -1 O ILE V 481 N ARG V 475 SHEET 1 VG 5 GLU V 516 LEU V 518 0 SHEET 2 VG 5 SER V 510 ASP V 513 -1 O MET V 511 N LEU V 518 SHEET 3 VG 5 VAL V 527 ILE V 531 -1 O ALA V 528 N GLN V 512 SHEET 4 VG 5 ALA V 480 GLY V 489 -1 O ALA V 480 N ILE V 531 SHEET 5 VG 5 VAL V 473 ARG V 475 -1 N PHE V 474 O ILE V 481 SHEET 1 VH 5 GLU V 516 LEU V 518 0 SHEET 2 VH 5 SER V 510 ASP V 513 -1 O MET V 511 N LEU V 518 SHEET 3 VH 5 VAL V 527 ILE V 531 -1 O ALA V 528 N GLN V 512 SHEET 4 VH 5 ALA V 480 GLY V 489 -1 O ALA V 480 N ILE V 531 SHEET 5 VH 5 ALA V 464 ARG V 467 -1 O SER V 465 N THR V 488 LINK C GLY V 12 N HSO V 13 1555 1555 1.36 LINK C HSO V 13 N VAL V 14 1555 1555 1.34 LINK C GLY V 79 N HSO V 80 1555 1555 1.33 LINK C HSO V 80 N GLU V 81 1555 1555 1.35 LINK C MET V 104 N HSO V 105 1555 1555 1.35 LINK C HSO V 105 N GLY V 106 1555 1555 1.34 LINK C SER V 228 N HSO V 229 1555 1555 1.34 LINK C HSO V 229 N VAL V 230 1555 1555 1.35 LINK C VAL V 294 N HSO V 295 1555 1555 1.34 LINK C HSO V 295 N HSO V 296 1555 1555 1.35 LINK C HSO V 296 N LYS V 297 1555 1555 1.35 LINK C ILE V 540 N HSO V 541 1555 1555 1.33 LINK C HSO V 541 N GLU V 542 1555 1555 1.34 LINK C ASN V 553 N HSO V 554 1555 1555 1.32 LINK C HSO V 554 N TYR V 555 1555 1555 1.34 LINK C TYR V 555 N HSO V 556 1555 1555 1.34 LINK C HSO V 556 N ILE V 557 1555 1555 1.34 CISPEP 1 LEU V 72 LEU V 73 0 -8.87 CISPEP 2 HSO V 80 GLU V 81 0 3.96 CISPEP 3 GLU V 81 SER V 82 0 1.09 CISPEP 4 PHE V 83 SER V 84 0 1.36 CISPEP 5 LEU V 93 CYS V 94 0 -1.39 CISPEP 6 THR V 280 PRO V 281 0 7.07 SITE 1 AC1 12 THR V 16 GLY V 17 LYS V 18 THR V 19 SITE 2 AC1 12 LYS V 20 ASP V 23 PRO V 78 GLY V 79 SITE 3 AC1 12 LYS V 131 SER V 198 ALA V 199 VAL V 200 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000