HEADER TRANSPORT PROTEIN 24-JUL-13 4BZA TITLE CRYSTAL STRUCTURE OF TAMA POTRA DOMAINS 1-3 FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLOCATION AND ASSEMBLY MODULE TAMA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: POTRA DOMAINS 1-3, RESIDUES 22-275; COMPND 5 SYNONYM: AUTOTRANSPORTER ASSEMBLY FACTOR TAMA, TAMA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PRIL PL1SL2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET29A KEYWDS TRANSPORT PROTEIN, POLYPEPTIDE TRANSPORT-ASSOCIATED, AUTOTRANSPORTER KEYWDS 2 BIOGENESIS, OUTER MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,F.GRUSS,F.ZAEHRINGER,B.M.BURMANN,S.HILLER,T.MAIER REVDAT 4 08-MAY-24 4BZA 1 REMARK REVDAT 3 20-NOV-13 4BZA 1 JRNL REVDAT 2 02-OCT-13 4BZA 1 JRNL REVDAT 1 25-SEP-13 4BZA 0 JRNL AUTH F.GRUSS,F.ZAEHRINGER,R.P.JAKOB,B.M.BURMANN,S.HILLER,T.MAIER JRNL TITL THE STRUCTURAL BASIS OF AUTOTRANSPORTER TRANSLOCATION BY JRNL TITL 2 TAMA JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 1318 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 24056943 JRNL DOI 10.1038/NSMB.2689 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9857 - 4.7271 1.00 2839 142 0.1738 0.1837 REMARK 3 2 4.7271 - 3.7527 1.00 2697 130 0.1435 0.1602 REMARK 3 3 3.7527 - 3.2786 1.00 2631 153 0.1682 0.2062 REMARK 3 4 3.2786 - 2.9789 1.00 2623 148 0.1687 0.1932 REMARK 3 5 2.9789 - 2.7654 1.00 2563 165 0.1733 0.2241 REMARK 3 6 2.7654 - 2.6024 1.00 2586 140 0.1729 0.2148 REMARK 3 7 2.6024 - 2.4721 1.00 2623 130 0.1641 0.2041 REMARK 3 8 2.4721 - 2.3645 1.00 2582 116 0.1585 0.1994 REMARK 3 9 2.3645 - 2.2735 1.00 2566 154 0.1679 0.2084 REMARK 3 10 2.2735 - 2.1950 1.00 2563 144 0.1726 0.2270 REMARK 3 11 2.1950 - 2.1264 1.00 2564 133 0.1899 0.1971 REMARK 3 12 2.1264 - 2.0656 1.00 2588 134 0.2017 0.2535 REMARK 3 13 2.0656 - 2.0112 1.00 2553 135 0.2438 0.3028 REMARK 3 14 2.0112 - 1.9622 1.00 2555 143 0.2441 0.2795 REMARK 3 15 1.9622 - 1.9175 1.00 2543 128 0.2631 0.2916 REMARK 3 16 1.9175 - 1.8767 1.00 2563 128 0.2778 0.3172 REMARK 3 17 1.8767 - 1.8392 0.98 2484 125 0.2979 0.2876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2037 REMARK 3 ANGLE : 1.464 2762 REMARK 3 CHIRALITY : 0.071 306 REMARK 3 PLANARITY : 0.008 365 REMARK 3 DIHEDRAL : 14.700 769 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 25 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1465 59.5417 -1.0894 REMARK 3 T TENSOR REMARK 3 T11: 1.5152 T22: 0.6782 REMARK 3 T33: 1.3416 T12: 0.2060 REMARK 3 T13: 0.4308 T23: -0.1194 REMARK 3 L TENSOR REMARK 3 L11: 4.4675 L22: 4.2482 REMARK 3 L33: 3.8340 L12: -2.7334 REMARK 3 L13: -0.5369 L23: 2.5063 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: -0.8068 S13: 2.0224 REMARK 3 S21: 1.1838 S22: 0.3392 S23: 1.0150 REMARK 3 S31: -1.8158 S32: -0.2122 S33: -0.0999 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 105 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3925 28.4906 -3.3204 REMARK 3 T TENSOR REMARK 3 T11: 0.2199 T22: 0.4127 REMARK 3 T33: 0.3353 T12: 0.0772 REMARK 3 T13: 0.0718 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.8229 L22: 8.2766 REMARK 3 L33: 5.3029 L12: 2.5264 REMARK 3 L13: -1.4619 L23: -4.6997 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.2877 S13: 0.2042 REMARK 3 S21: 0.2290 S22: -0.0214 S23: 0.4600 REMARK 3 S31: -0.1506 S32: -0.4126 S33: -0.0677 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 157 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3762 18.0656 15.3584 REMARK 3 T TENSOR REMARK 3 T11: 0.3476 T22: 0.2874 REMARK 3 T33: 0.3238 T12: -0.0260 REMARK 3 T13: 0.0827 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.5101 L22: 1.4841 REMARK 3 L33: 6.2418 L12: 1.3755 REMARK 3 L13: -3.3337 L23: -2.7517 REMARK 3 S TENSOR REMARK 3 S11: -0.2580 S12: -0.0835 S13: -0.2251 REMARK 3 S21: -0.0474 S22: -0.1356 S23: -0.0748 REMARK 3 S31: 0.4209 S32: 0.0953 S33: 0.4134 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 263 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2275 27.3781 54.3769 REMARK 3 T TENSOR REMARK 3 T11: 1.5292 T22: 1.2522 REMARK 3 T33: 0.8085 T12: 0.2594 REMARK 3 T13: 0.3163 T23: -0.2267 REMARK 3 L TENSOR REMARK 3 L11: -0.0474 L22: -0.0330 REMARK 3 L33: -0.0281 L12: 0.0323 REMARK 3 L13: -0.0338 L23: 0.0855 REMARK 3 S TENSOR REMARK 3 S11: -0.9153 S12: -0.7627 S13: 0.2250 REMARK 3 S21: 1.3772 S22: 0.4090 S23: 0.8330 REMARK 3 S31: 0.3240 S32: 0.0821 S33: 0.5509 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.99 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 1.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX, PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: R VALUE OF 173.1 PERC. NOT ACCEPTED BY INPUT FORM, BUT DUE REMARK 200 TO CC ONE HALF 76 PERC. AND I OVER SIGMA 2 AT 12- FOLD REMARK 200 REDUNDANCY A REASONABLE RESOLUTION CUTOFF REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES PH 7.5, DI-NA TARTRATE, PEG REMARK 280 3350, NACL, GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.33000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.52500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.99500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.52500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.66500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.52500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.52500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 112.99500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.52500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.52500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.66500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.33000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2087 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 ASN A 23 REMARK 465 VAL A 24 REMARK 465 ARG A 84 REMARK 465 PRO A 85 REMARK 465 PRO A 86 REMARK 465 PRO A 87 REMARK 465 LYS A 88 REMARK 465 LYS A 89 REMARK 465 GLY A 90 REMARK 465 ARG A 91 REMARK 465 GLN A 92 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 276 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 277 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 278 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 155 O HOH A 2159 1.55 REMARK 500 O HOH A 2278 O HOH A 2280 2.06 REMARK 500 O HOH A 2116 O HOH A 2117 2.11 REMARK 500 O HOH A 2110 O HOH A 2118 2.13 REMARK 500 O HOH A 2055 O HOH A 2215 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2250 O HOH A 2296 4455 2.04 REMARK 500 O HOH A 2045 O HOH A 2045 7555 2.09 REMARK 500 O HOH A 2191 O HOH A 2191 7555 2.10 REMARK 500 O HOH A 2071 O HOH A 2263 3554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 45 -42.39 -139.39 REMARK 500 SER A 48 -92.46 -117.20 REMARK 500 GLU A 50 -162.28 171.44 REMARK 500 PRO A 53 -165.23 -69.09 REMARK 500 ASP A 54 -31.56 -135.98 REMARK 500 THR A 270 32.30 -146.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C00 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TAMA FROM E. COLI REMARK 999 REMARK 999 SEQUENCE REMARK 999 WITHOUT N-TERMINAL SIGNAL SEQUENCE (AA. 1-21),COMPRISES AA. REMARK 999 22-275,ADDITIONAL N-TERMINAL MET,ADDITIONAL C-TERMINAL REMARK 999 6XHIS DBREF 4BZA A 22 275 UNP P0ADE4 TAMA_ECOLI 22 275 SEQADV 4BZA MET A 21 UNP P0ADE4 EXPRESSION TAG SEQADV 4BZA HIS A 276 UNP P0ADE4 EXPRESSION TAG SEQADV 4BZA HIS A 277 UNP P0ADE4 EXPRESSION TAG SEQADV 4BZA HIS A 278 UNP P0ADE4 EXPRESSION TAG SEQADV 4BZA HIS A 279 UNP P0ADE4 EXPRESSION TAG SEQADV 4BZA HIS A 280 UNP P0ADE4 EXPRESSION TAG SEQADV 4BZA HIS A 281 UNP P0ADE4 EXPRESSION TAG SEQRES 1 A 261 MET ALA ASN VAL ARG LEU GLN VAL GLU GLY LEU SER GLY SEQRES 2 A 261 GLN LEU GLU LYS ASN VAL ARG ALA GLN LEU SER THR ILE SEQRES 3 A 261 GLU SER ASP GLU VAL THR PRO ASP ARG ARG PHE ARG ALA SEQRES 4 A 261 ARG VAL ASP ASP ALA ILE ARG GLU GLY LEU LYS ALA LEU SEQRES 5 A 261 GLY TYR TYR GLN PRO THR ILE GLU PHE ASP LEU ARG PRO SEQRES 6 A 261 PRO PRO LYS LYS GLY ARG GLN VAL LEU ILE ALA LYS VAL SEQRES 7 A 261 THR PRO GLY VAL PRO VAL LEU ILE GLY GLY THR ASP VAL SEQRES 8 A 261 VAL LEU ARG GLY GLY ALA ARG THR ASP LYS ASP TYR LEU SEQRES 9 A 261 LYS LEU LEU ASP THR ARG PRO ALA ILE GLY THR VAL LEU SEQRES 10 A 261 ASN GLN GLY ASP TYR GLU ASN PHE LYS LYS SER LEU THR SEQRES 11 A 261 SER ILE ALA LEU ARG LYS GLY TYR PHE ASP SER GLU PHE SEQRES 12 A 261 THR LYS ALA GLN LEU GLY ILE ALA LEU GLY LEU HIS LYS SEQRES 13 A 261 ALA PHE TRP ASP ILE ASP TYR ASN SER GLY GLU ARG TYR SEQRES 14 A 261 ARG PHE GLY HIS VAL THR PHE GLU GLY SER GLN ILE ARG SEQRES 15 A 261 ASP GLU TYR LEU GLN ASN LEU VAL PRO PHE LYS GLU GLY SEQRES 16 A 261 ASP GLU TYR GLU SER LYS ASP LEU ALA GLU LEU ASN ARG SEQRES 17 A 261 ARG LEU SER ALA THR GLY TRP PHE ASN SER VAL VAL VAL SEQRES 18 A 261 ALA PRO GLN PHE ASP LYS ALA ARG GLU THR LYS VAL LEU SEQRES 19 A 261 PRO LEU THR GLY VAL VAL SER PRO ARG THR GLU ASN THR SEQRES 20 A 261 ILE GLU THR GLY VAL GLY TYR SER HIS HIS HIS HIS HIS SEQRES 21 A 261 HIS HET EDO A 301 8 HET EDO A 302 8 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *290(H2 O) HELIX 1 1 GLY A 33 SER A 44 1 12 HELIX 2 2 PHE A 57 ALA A 71 1 15 HELIX 3 3 GLY A 115 THR A 119 5 5 HELIX 4 4 LYS A 121 ASP A 128 1 8 HELIX 5 5 GLN A 139 LYS A 156 1 18 HELIX 6 6 ASP A 203 ASN A 208 1 6 HELIX 7 7 SER A 220 THR A 233 1 14 HELIX 8 8 PHE A 245 ALA A 248 5 4 SHEET 1 AA 3 LEU A 26 GLU A 29 0 SHEET 2 AA 3 LEU A 94 THR A 99 1 O LEU A 94 N GLN A 27 SHEET 3 AA 3 THR A 78 ASP A 82 -1 O THR A 78 N THR A 99 SHEET 1 AB 3 LEU A 105 ARG A 114 0 SHEET 2 AB 3 LYS A 176 ASN A 184 1 O ALA A 177 N GLY A 107 SHEET 3 AB 3 GLU A 162 ALA A 171 -1 O GLU A 162 N ASN A 184 SHEET 1 AC 3 HIS A 193 GLU A 197 0 SHEET 2 AC 3 LEU A 256 PRO A 262 1 N LEU A 256 O HIS A 193 SHEET 3 AC 3 PHE A 236 PRO A 243 -1 N ASN A 237 O SER A 261 SITE 1 AC1 7 PHE A 178 ALA A 224 ASN A 227 ARG A 228 SITE 2 AC1 7 HOH A2263 HOH A2295 HOH A2296 SITE 1 AC2 6 GLU A 197 GLY A 198 SER A 199 ARG A 202 SITE 2 AC2 6 HOH A2211 HOH A2216 CRYST1 83.050 83.050 150.660 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006637 0.00000