data_4BZU # _entry.id 4BZU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4BZU PDBE EBI-57847 WWPDB D_1290057847 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4BZT unspecified 'SOLUTION STRUCTURE OF MLN 944-DNA COMPLEXES' PDB 4BZV unspecified 'THE SOLUTION STRUCTURE OF THE MLN 944-D(TACGCGTA)2 COMPLEX' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BZU _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-07-30 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Serobian, A.' 1 'Thomas, D.S.' 2 'Ball, G.E.' 3 'Denny, W.A.' 4 'Wakelin, L.P.G.' 5 # _citation.id primary _citation.title 'The Solution Structure of Bis(Phenazine-1-Carboxamide)-DNA Complexes: Mln 944 Binding Corrected and Extended.' _citation.journal_abbrev Biopolymers _citation.journal_volume 101 _citation.page_first 1099 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24898663 _citation.pdbx_database_id_DOI 10.1002/BIP.22513 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Serobian, A.' 1 primary 'Thomas, D.S.' 2 primary 'Ball, G.E.' 3 primary 'Denny, W.A.' 4 primary 'Wakelin, L.P.G.' 5 # _cell.entry_id 4BZU _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BZU _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DNA 2425.629 2 ? ? ? 'THE DNA CONFORMATION IS IN THE FORM OF B-DNA.' 2 non-polymer syn '1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM' 590.718 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DT)(DG)(DC)(DA)(DT)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TATGCATA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DA n 1 7 DT n 1 8 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC CONSTRUCT' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4BZU _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 4BZU _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4BZU A 1 ? 8 ? 4BZU 1 ? 8 ? 1 8 2 1 4BZU B 1 ? 8 ? 4BZU 9 ? 16 ? 9 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 XR2 non-polymer . '1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM' ? 'C34 H38 N8 O2 4' 590.718 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 3 1 TOCSY 1 4 1 '31P HSQC' 1 5 1 '15N HSQC' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 288.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1.0 _pdbx_nmr_exptl_sample_conditions.pH 5.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 80 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10% WATER/90% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 # _pdbx_nmr_refine.entry_id 4BZU _pdbx_nmr_refine.method 'AMBER - MOLECULAR DYNAMICS' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 4BZU _pdbx_nmr_details.text NONE # _pdbx_nmr_ensemble.entry_id 4BZU _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'DISTANCE RESTRAINTS' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement AMBER ? D.A.CASE,ET.AL. 1 'structure solution' TOPSPIN 3.1 ? 2 # _exptl.entry_id 4BZU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 4BZU _struct.title 'The Solution Structure of the MLN 944-d(TATGCATA)2 Complex' _struct.pdbx_descriptor ;5'-D(*TP*AP*TP*GP*CP*AP*TP*A)-3', 1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BZU _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'BIS(PHENAZINE-1-CARBOXAMIDES), MLN 944, DNA, INTERCALATION, DRUG DESIGN, ANTICANCER DRUG.' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 2 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 2 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 3 B DA 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 6 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 6 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 7 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 7 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE XR2 A 17' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DT A 3 ? DT A 3 . ? 1_555 ? 2 AC1 8 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC1 8 DC A 5 ? DC A 5 . ? 1_555 ? 4 AC1 8 DA A 6 ? DA A 6 . ? 1_555 ? 5 AC1 8 DT B 3 ? DT B 11 . ? 1_555 ? 6 AC1 8 DG B 4 ? DG B 12 . ? 1_555 ? 7 AC1 8 DC B 5 ? DC B 13 . ? 1_555 ? 8 AC1 8 DA B 6 ? DA B 14 . ? 1_555 ? # _database_PDB_matrix.entry_id 4BZU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BZU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n B 1 1 DT 1 9 9 DT DT B . n B 1 2 DA 2 10 10 DA DA B . n B 1 3 DT 3 11 11 DT DT B . n B 1 4 DG 4 12 12 DG DG B . n B 1 5 DC 5 13 13 DC DC B . n B 1 6 DA 6 14 14 DA DA B . n B 1 7 DT 7 15 15 DT DT B . n B 1 8 DA 8 16 16 DA DA B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id XR2 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 17 _pdbx_nonpoly_scheme.auth_seq_num 17 _pdbx_nonpoly_scheme.pdb_mon_id XR2 _pdbx_nonpoly_scheme.auth_mon_id XR2 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-21 2 'Structure model' 1 1 2013-08-28 3 'Structure model' 1 2 2013-09-04 4 'Structure model' 1 3 2014-09-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Database references' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.79 117.00 -3.21 0.50 N 2 1 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 120.92 117.70 3.22 0.50 N 3 1 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.09 118.60 -4.51 0.60 N 4 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.49 108.30 3.19 0.30 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 112.21 108.30 3.91 0.30 N 6 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.66 121.90 -4.24 0.70 N 7 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.49 108.30 4.19 0.30 N 8 1 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.83 117.00 -3.17 0.50 N 9 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.50 117.70 3.80 0.50 N 10 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.54 118.60 -4.06 0.60 N 11 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.17 108.30 2.87 0.30 N 12 1 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.86 117.00 -3.14 0.50 N 13 1 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.17 117.70 3.47 0.50 N 14 1 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.89 118.60 -4.71 0.60 N 15 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 111.75 108.30 3.45 0.30 N 16 1 C4 B DA 10 ? ? C5 B DA 10 ? ? C6 B DA 10 ? ? 113.25 117.00 -3.75 0.50 N 17 1 C5 B DA 10 ? ? C6 B DA 10 ? ? N1 B DA 10 ? ? 121.05 117.70 3.35 0.50 N 18 1 N1 B DA 10 ? ? C6 B DA 10 ? ? N6 B DA 10 ? ? 113.38 118.60 -5.22 0.60 N 19 1 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 119.18 122.90 -3.72 0.60 N 20 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.31 108.30 3.01 0.30 N 21 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.69 108.30 2.39 0.30 N 22 1 C4 B DA 14 ? ? C5 B DA 14 ? ? C6 B DA 14 ? ? 113.82 117.00 -3.18 0.50 N 23 1 C5 B DA 14 ? ? C6 B DA 14 ? ? N1 B DA 14 ? ? 121.51 117.70 3.81 0.50 N 24 1 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 114.37 118.60 -4.23 0.60 N 25 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 110.13 108.30 1.83 0.30 N 26 1 C4 B DA 16 ? ? C5 B DA 16 ? ? C6 B DA 16 ? ? 113.71 117.00 -3.29 0.50 N 27 1 C5 B DA 16 ? ? C6 B DA 16 ? ? N1 B DA 16 ? ? 121.73 117.70 4.03 0.50 N 28 1 N1 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 114.44 118.60 -4.16 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 1 ? ? 0.082 'SIDE CHAIN' 2 1 DA A 8 ? ? 0.064 'SIDE CHAIN' 3 1 DT B 9 ? ? 0.065 'SIDE CHAIN' 4 1 DA B 10 ? ? 0.073 'SIDE CHAIN' 5 1 DT B 15 ? ? 0.084 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4BZU 'double helix' 4BZU 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 8 1_555 -0.384 0.149 -0.431 20.580 -2.072 -8.538 1 A_DT1:DA16_B A 1 ? B 16 ? 20 1 1 A DA 2 1_555 B DT 7 1_555 0.147 -0.025 0.121 8.768 -11.777 0.322 2 A_DA2:DT15_B A 2 ? B 15 ? 20 1 1 A DT 3 1_555 B DA 6 1_555 -0.287 0.042 0.010 6.401 -11.104 -5.283 3 A_DT3:DA14_B A 3 ? B 14 ? 20 1 1 A DG 4 1_555 B DC 5 1_555 0.034 -0.060 0.122 -0.957 -8.007 -0.237 4 A_DG4:DC13_B A 4 ? B 13 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 0.203 -0.026 0.218 -4.085 -9.501 1.068 5 A_DC5:DG12_B A 5 ? B 12 ? 19 1 1 A DA 6 1_555 B DT 3 1_555 0.159 0.053 0.177 -3.027 0.373 -5.246 6 A_DA6:DT11_B A 6 ? B 11 ? 20 1 1 A DT 7 1_555 B DA 2 1_555 -0.145 -0.055 0.260 5.664 -7.233 2.924 7 A_DT7:DA10_B A 7 ? B 10 ? 20 1 1 A DA 8 1_555 B DT 1 1_555 0.002 -0.020 -0.007 19.716 -9.077 1.545 8 A_DA8:DT9_B A 8 ? B 9 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 8 1_555 A DA 2 1_555 B DT 7 1_555 -0.311 1.188 4.359 -0.091 29.161 30.027 -2.980 0.423 3.992 45.118 0.140 41.621 1 AA_DT1DA2:DT15DA16_BB A 1 ? B 16 ? A 2 ? B 15 ? 1 A DA 2 1_555 B DT 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.641 -0.698 3.434 -1.436 -4.167 32.562 -0.472 0.871 3.518 -7.389 2.546 32.851 2 AA_DA2DT3:DA14DT15_BB A 2 ? B 15 ? A 3 ? B 14 ? 1 A DT 3 1_555 B DA 6 1_555 A DG 4 1_555 B DC 5 1_555 -0.328 0.377 6.955 -4.285 -3.303 11.724 9.575 -8.785 6.332 -15.157 19.662 12.908 3 AA_DT3DG4:DC13DA14_BB A 3 ? B 14 ? A 4 ? B 13 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 0.394 0.764 3.333 -1.525 -3.339 38.599 1.562 -0.782 3.241 -5.037 2.300 38.767 4 AA_DG4DC5:DG12DC13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A DC 5 1_555 B DG 4 1_555 A DA 6 1_555 B DT 3 1_555 1.060 0.809 6.830 -1.674 -5.284 14.176 11.701 -6.741 5.970 -20.421 6.468 15.216 5 AA_DC5DA6:DT11DG12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A DA 6 1_555 B DT 3 1_555 A DT 7 1_555 B DA 2 1_555 0.566 -0.338 3.227 -1.561 -1.145 22.229 -0.453 -2.038 3.193 -2.964 4.040 22.312 6 AA_DA6DT7:DA10DT11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A DT 7 1_555 B DA 2 1_555 A DA 8 1_555 B DT 1 1_555 0.533 0.902 3.275 4.569 2.129 45.209 0.976 -0.280 3.348 2.759 -5.922 45.475 7 AA_DT7DA8:DT9DA10_BB A 7 ? B 10 ? A 8 ? B 9 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '1-METHYL-9-[12-(9-METHYLPHENAZIN-10-IUM-1-YL)-12-OXO-2,11-DIAZA-5,8-DIAZONIADODEC-1-ANOYL]PHENAZIN-10-IUM' _pdbx_entity_nonpoly.comp_id XR2 #