HEADER TRANSFERASE 30-JUL-13 4BZX TITLE STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS APS KINASE CYSC IN COMPLEX TITLE 2 WITH AMPPNP AND APS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL ENZYME CYSN/CYSC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 440-612; COMPND 5 SYNONYM: APS KINASE, ATP ADENOSINE-5-PHOSPHOSULFATE 3- COMPND 6 PHOSPHOTRANSFERASE, CYSC; COMPND 7 EC: 2.7.1.25; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28APLUS KEYWDS TRANSFERASE, SULFUR ASSIMILATION EXPDTA X-RAY DIFFRACTION AUTHOR O.POYRAZ,B.LOHKAMP,R.SCHNELL,G.SCHNEIDER REVDAT 3 20-DEC-23 4BZX 1 REMARK LINK REVDAT 2 08-APR-15 4BZX 1 JRNL REVDAT 1 13-AUG-14 4BZX 0 JRNL AUTH O.POYRAZ,K.BRUNNER,B.LOHKAMP,H.AXELSSON,L.G.J.HAMMARSTROM, JRNL AUTH 2 R.SCHNELL,G.SCHNEIDER JRNL TITL CRYSTAL STRUCTURES OF THE KINASE DOMAIN OF THE JRNL TITL 2 SULFATE-ACTIVATING COMPLEX IN MYCOBACTERIUM TUBERCULOSIS. JRNL REF PLOS ONE V. 10 21494 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 25807013 JRNL DOI 10.1371/JOURNAL.PONE.0121494 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 36095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1930 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 203 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3041 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2899 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4141 ; 2.032 ; 2.046 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6691 ; 1.294 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 5.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;34.736 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;12.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;12.843 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3347 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 673 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1427 ; 2.018 ; 2.017 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1426 ; 2.015 ; 2.015 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1793 ; 2.743 ; 3.011 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1794 ; 2.745 ; 3.013 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1614 ; 3.183 ; 2.588 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1612 ; 3.181 ; 2.586 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2333 ; 4.589 ; 3.714 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12788 ; 6.426 ;20.479 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12701 ; 6.392 ;20.331 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 440 612 B 440 612 10569 0.10 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 440 A 612 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8351 -2.9199 -14.8877 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0044 REMARK 3 T33: 0.0753 T12: -0.0063 REMARK 3 T13: 0.0036 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.7186 L22: 1.4528 REMARK 3 L33: 4.4490 L12: 0.0040 REMARK 3 L13: 0.1948 L23: -1.2868 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: -0.0272 S13: 0.0154 REMARK 3 S21: 0.0059 S22: 0.0357 S23: 0.1441 REMARK 3 S31: -0.0564 S32: -0.0394 S33: -0.0823 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 440 B 612 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3108 3.2916 -17.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.0490 REMARK 3 T33: 0.1109 T12: -0.0035 REMARK 3 T13: 0.0138 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.7169 L22: 0.9922 REMARK 3 L33: 3.1298 L12: 0.5602 REMARK 3 L13: 0.2704 L23: 0.5250 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: 0.0558 S13: 0.0310 REMARK 3 S21: -0.0534 S22: 0.0372 S23: -0.1199 REMARK 3 S31: -0.2508 S32: -0.1661 S33: -0.0825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4BZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BZP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE, PH 5.3 20% PEG4, 10% 2- REMARK 280 PROPANOL, 1.9 MM APS, 2.3 MM AMPPNP, 1.8 MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.91000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.91000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 442 O HOH A 2001 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' ANP A 1614 O2' ANP B 1614 3644 1.93 REMARK 500 O2' ANP A 1614 O3' ANP B 1614 3644 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 494 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG A 497 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 497 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 497 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 592 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 579 -66.85 -108.16 REMARK 500 ASN A 588 60.28 -152.97 REMARK 500 ILE B 579 -63.15 -109.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1624 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 457 OG REMARK 620 2 ANP A1614 O2G 173.2 REMARK 620 3 ANP A1614 O2B 89.0 97.7 REMARK 620 4 HOH A2013 O 91.3 88.5 87.8 REMARK 620 5 HOH A2014 O 80.6 98.6 98.9 169.4 REMARK 620 6 HOH A2015 O 83.4 89.8 169.2 84.7 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1622 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 457 OG REMARK 620 2 ANP B1614 O2B 76.5 REMARK 620 3 ANP B1614 O3G 164.1 100.6 REMARK 620 4 HOH B2008 O 80.8 92.9 115.1 REMARK 620 5 HOH B2009 O 77.1 73.7 87.0 156.3 REMARK 620 6 HOH B2010 O 79.5 151.3 98.1 98.6 85.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX A 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1621 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1622 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1623 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1624 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX B 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 1614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1617 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1618 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1619 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1620 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1621 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1622 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BZP RELATED DB: PDB REMARK 900 STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS APS KINASE CYSC IN REMARK 900 COMPLEX WITH ADP REMARK 900 RELATED ID: 4BZQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS APS KINASE CYSC IN REMARK 900 COMPLEX WITH ADP AND APS DBREF 4BZX A 440 612 UNP Q10600 CYSNC_MYCTU 440 612 DBREF 4BZX B 440 612 UNP Q10600 CYSNC_MYCTU 440 612 SEQRES 1 A 173 PRO PRO ARG GLY LYS THR VAL TRP PHE THR GLY LEU SER SEQRES 2 A 173 GLY SER GLY LYS SER SER VAL ALA MET LEU VAL GLU ARG SEQRES 3 A 173 LYS LEU LEU GLU LYS GLY ILE SER ALA TYR VAL LEU ASP SEQRES 4 A 173 GLY ASP ASN LEU ARG HIS GLY LEU ASN ALA ASP LEU GLY SEQRES 5 A 173 PHE SER MET ALA ASP ARG ALA GLU ASN LEU ARG ARG LEU SEQRES 6 A 173 SER HIS VAL ALA THR LEU LEU ALA ASP CYS GLY HIS LEU SEQRES 7 A 173 VAL LEU VAL PRO ALA ILE SER PRO LEU ALA GLU HIS ARG SEQRES 8 A 173 ALA LEU ALA ARG LYS VAL HIS ALA ASP ALA GLY ILE ASP SEQRES 9 A 173 PHE PHE GLU VAL PHE CYS ASP THR PRO LEU GLN ASP CYS SEQRES 10 A 173 GLU ARG ARG ASP PRO LYS GLY LEU TYR ALA LYS ALA ARG SEQRES 11 A 173 ALA GLY GLU ILE THR HIS PHE THR GLY ILE ASP SER PRO SEQRES 12 A 173 TYR GLN ARG PRO LYS ASN PRO ASP LEU ARG LEU THR PRO SEQRES 13 A 173 ASP ARG SER ILE ASP GLU GLN ALA GLN GLU VAL ILE ASP SEQRES 14 A 173 LEU LEU GLU SER SEQRES 1 B 173 PRO PRO ARG GLY LYS THR VAL TRP PHE THR GLY LEU SER SEQRES 2 B 173 GLY SER GLY LYS SER SER VAL ALA MET LEU VAL GLU ARG SEQRES 3 B 173 LYS LEU LEU GLU LYS GLY ILE SER ALA TYR VAL LEU ASP SEQRES 4 B 173 GLY ASP ASN LEU ARG HIS GLY LEU ASN ALA ASP LEU GLY SEQRES 5 B 173 PHE SER MET ALA ASP ARG ALA GLU ASN LEU ARG ARG LEU SEQRES 6 B 173 SER HIS VAL ALA THR LEU LEU ALA ASP CYS GLY HIS LEU SEQRES 7 B 173 VAL LEU VAL PRO ALA ILE SER PRO LEU ALA GLU HIS ARG SEQRES 8 B 173 ALA LEU ALA ARG LYS VAL HIS ALA ASP ALA GLY ILE ASP SEQRES 9 B 173 PHE PHE GLU VAL PHE CYS ASP THR PRO LEU GLN ASP CYS SEQRES 10 B 173 GLU ARG ARG ASP PRO LYS GLY LEU TYR ALA LYS ALA ARG SEQRES 11 B 173 ALA GLY GLU ILE THR HIS PHE THR GLY ILE ASP SER PRO SEQRES 12 B 173 TYR GLN ARG PRO LYS ASN PRO ASP LEU ARG LEU THR PRO SEQRES 13 B 173 ASP ARG SER ILE ASP GLU GLN ALA GLN GLU VAL ILE ASP SEQRES 14 B 173 LEU LEU GLU SER HET ADX A1613 27 HET ANP A1614 31 HET EDO A1615 4 HET EDO A1616 4 HET EDO A1617 4 HET EDO A1618 4 HET EDO A1619 4 HET EDO A1620 4 HET EDO A1621 4 HET PEG A1622 7 HET CIT A1623 13 HET MG A1624 1 HET ADX B1613 27 HET ANP B1614 31 HET EDO B1615 4 HET EDO B1616 4 HET EDO B1617 4 HET EDO B1618 4 HET EDO B1619 4 HET EDO B1620 4 HET CIT B1621 13 HET MG B1622 1 HETNAM ADX ADENOSINE-5'-PHOSPHOSULFATE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CIT CITRIC ACID HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ADX 2(C10 H14 N5 O10 P S) FORMUL 4 ANP 2(C10 H17 N6 O12 P3) FORMUL 5 EDO 13(C2 H6 O2) FORMUL 12 PEG C4 H10 O3 FORMUL 13 CIT 2(C6 H8 O7) FORMUL 14 MG 2(MG 2+) FORMUL 25 HOH *173(H2 O) HELIX 1 1 GLY A 455 LYS A 470 1 16 HELIX 2 2 ASP A 478 ARG A 483 1 6 HELIX 3 3 SER A 493 CYS A 514 1 22 HELIX 4 4 LEU A 526 GLY A 541 1 16 HELIX 5 5 PRO A 552 ASP A 560 1 9 HELIX 6 6 GLY A 563 ALA A 570 1 8 HELIX 7 7 SER A 598 SER A 612 1 15 HELIX 8 8 GLY B 455 LYS B 470 1 16 HELIX 9 9 ASP B 478 ARG B 483 1 6 HELIX 10 10 SER B 493 CYS B 514 1 22 HELIX 11 11 LEU B 526 GLY B 541 1 16 HELIX 12 12 PRO B 552 ASP B 560 1 9 HELIX 13 13 GLY B 563 ALA B 570 1 8 HELIX 14 14 SER B 598 GLU B 611 1 14 SHEET 1 AA 5 ALA A 474 VAL A 476 0 SHEET 2 AA 5 LEU A 517 PRO A 521 1 O LEU A 517 N TYR A 475 SHEET 3 AA 5 LYS A 444 THR A 449 1 O LYS A 444 N VAL A 518 SHEET 4 AA 5 ASP A 543 CYS A 549 1 O ASP A 543 N THR A 445 SHEET 5 AA 5 LEU A 591 LEU A 593 1 O LEU A 591 N PHE A 548 SHEET 1 BA 5 ALA B 474 VAL B 476 0 SHEET 2 BA 5 LEU B 517 PRO B 521 1 O LEU B 517 N TYR B 475 SHEET 3 BA 5 LYS B 444 THR B 449 1 O LYS B 444 N VAL B 518 SHEET 4 BA 5 ASP B 543 CYS B 549 1 O ASP B 543 N THR B 445 SHEET 5 BA 5 LEU B 591 LEU B 593 1 O LEU B 591 N PHE B 548 LINK OG SER A 457 MG MG A1624 1555 1555 2.13 LINK O2G ANP A1614 MG MG A1624 1555 1555 2.07 LINK O2B ANP A1614 MG MG A1624 1555 1555 2.06 LINK MG MG A1624 O HOH A2013 1555 1555 2.12 LINK MG MG A1624 O HOH A2014 1555 1555 2.05 LINK MG MG A1624 O HOH A2015 1555 1555 2.14 LINK OG ASER B 457 MG MG B1622 1555 1555 2.39 LINK O2B ANP B1614 MG MG B1622 1555 1555 2.42 LINK O3G ANP B1614 MG MG B1622 1555 1555 1.89 LINK MG MG B1622 O HOH B2008 1555 1555 1.76 LINK MG MG B1622 O HOH B2009 1555 1555 2.37 LINK MG MG B1622 O HOH B2010 1555 1555 2.21 SITE 1 AC1 21 SER A 452 ASP A 480 ARG A 483 PHE A 492 SITE 2 AC1 21 ARG A 497 ASN A 500 LEU A 501 ALA A 522 SITE 3 AC1 21 ILE A 523 SER A 524 PRO A 525 LYS A 562 SITE 4 AC1 21 LEU A 564 HIS A 575 PHE A 576 THR A 577 SITE 5 AC1 21 ANP A1614 EDO A1621 HOH A2048 HOH A2062 SITE 6 AC1 21 HOH A2095 SITE 1 AC2 24 LEU A 451 SER A 452 GLY A 453 SER A 454 SITE 2 AC2 24 GLY A 455 LYS A 456 SER A 457 SER A 458 SITE 3 AC2 24 ILE A 523 ARG A 559 PRO A 561 LYS A 562 SITE 4 AC2 24 ARG A 597 ILE A 599 GLN A 602 ADX A1613 SITE 5 AC2 24 MG A1624 HOH A2013 HOH A2015 HOH A2048 SITE 6 AC2 24 HOH A2060 HOH A2080 ANP B1614 HOH B2013 SITE 1 AC3 6 PHE A 548 ASP A 550 THR A 551 ARG A 585 SITE 2 AC3 6 HOH A2007 HOH A2067 SITE 1 AC4 1 LEU A 468 SITE 1 AC5 6 LYS A 470 ALA A 495 GLN A 604 ILE A 607 SITE 2 AC5 6 HOH A2020 HOH A2094 SITE 1 AC6 2 ARG A 502 HIS A 506 SITE 1 AC7 7 GLY A 443 ILE A 472 SER A 473 GLY A 515 SITE 2 AC7 7 LEU A 517 HOH A2021 HOH A2096 SITE 1 AC8 6 ILE A 472 MET A 494 HIS A 575 ASP A 580 SITE 2 AC8 6 GLU A 611 HOH A2038 SITE 1 AC9 4 ASP A 480 ARG A 483 HIS A 484 ADX A1613 SITE 1 BC1 6 HIS A 506 THR A 509 VAL A 536 HOH A2097 SITE 2 BC1 6 GLY B 485 LEU B 486 SITE 1 BC2 9 ALA A 527 ARG A 530 ALA A 531 ARG A 534 SITE 2 BC2 9 GLU A 546 PRO A 586 LYS A 587 ASN A 588 SITE 3 BC2 9 PRO A 589 SITE 1 BC3 5 SER A 457 ANP A1614 HOH A2013 HOH A2014 SITE 2 BC3 5 HOH A2015 SITE 1 BC4 17 ARG B 483 PHE B 492 ARG B 497 ASN B 500 SITE 2 BC4 17 LEU B 501 ALA B 522 ILE B 523 SER B 524 SITE 3 BC4 17 PRO B 525 LYS B 562 LEU B 564 HIS B 575 SITE 4 BC4 17 PHE B 576 THR B 577 ANP B1614 HOH B2022 SITE 5 BC4 17 HOH B2074 SITE 1 BC5 21 ANP A1614 LEU B 451 SER B 452 GLY B 453 SITE 2 BC5 21 SER B 454 GLY B 455 LYS B 456 SER B 457 SITE 3 BC5 21 SER B 458 ILE B 523 ARG B 559 PRO B 561 SITE 4 BC5 21 LYS B 562 ARG B 597 ILE B 599 GLN B 602 SITE 5 BC5 21 ADX B1613 MG B1622 HOH B2008 HOH B2009 SITE 6 BC5 21 HOH B2013 SITE 1 BC6 8 THR A 594 HOH A2079 PHE B 548 PRO B 586 SITE 2 BC6 8 LYS B 587 PRO B 589 ARG B 592 EDO B1618 SITE 1 BC7 5 HIS B 506 THR B 509 VAL B 536 ASP B 539 SITE 2 BC7 5 ALA B 540 SITE 1 BC8 7 LEU B 451 PHE B 548 ASP B 550 THR B 551 SITE 2 BC8 7 ARG B 585 HOH B2003 HOH B2056 SITE 1 BC9 5 ASP A 550 ARG A 585 THR A 594 ARG B 585 SITE 2 BC9 5 EDO B1615 SITE 1 CC1 6 GLY B 491 PHE B 492 SER B 493 ASP B 496 SITE 2 CC1 6 GLU B 611 HOH B2030 SITE 1 CC2 3 GLU B 464 TYR B 475 VAL B 476 SITE 1 CC3 8 ALA B 527 ARG B 530 ARG B 534 GLU B 546 SITE 2 CC3 8 PRO B 586 LYS B 587 ASN B 588 HOH B2076 SITE 1 CC4 5 SER B 457 ANP B1614 HOH B2008 HOH B2009 SITE 2 CC4 5 HOH B2010 CRYST1 63.820 69.430 79.370 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015669 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012599 0.00000