HEADER TRANSFERASE 31-JUL-13 4C06 TITLE CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE TITLE 2 PRMT6 WITH MGCL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6,; COMPND 5 EC: 2.1.1.-, 2.1.1.125 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090 KEYWDS TRANSFERASE, ARGININE METHYLTRANSFERASE, S-ADENOSYL-L-METHIONINE EXPDTA X-RAY DIFFRACTION AUTHOR L.BONNEFOND,V.CURA,N.TROFFER-CHARLIER,J.MAILLIOT,J.M.WURTZ, AUTHOR 2 J.CAVARELLI REVDAT 5 13-NOV-24 4C06 1 REMARK REVDAT 4 20-DEC-23 4C06 1 REMARK LINK REVDAT 3 12-AUG-15 4C06 1 JRNL REVDAT 2 01-JUL-15 4C06 1 JRNL REVDAT 1 30-JUL-14 4C06 0 JRNL AUTH L.BONNEFOND,J.STOJKO,J.MAILLIOT,N.TROFFER-CHARLIER,V.CURA, JRNL AUTH 2 J.M.WURTZ,S.CIANFERANI,J.CAVARELLI JRNL TITL FUNCTIONAL INSIGHTS FROM HIGH RESOLUTION STRUCTURES OF MOUSE JRNL TITL 2 PROTEIN ARGININE METHYLTRANSFERASE 6. JRNL REF J.STRUCT.BIOL. V. 191 175 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 26094878 JRNL DOI 10.1016/J.JSB.2015.06.017 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 48036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9363 - 4.1139 1.00 2766 144 0.1335 0.1615 REMARK 3 2 4.1139 - 3.2658 1.00 2753 144 0.1307 0.1774 REMARK 3 3 3.2658 - 2.8531 1.00 2733 144 0.1481 0.1876 REMARK 3 4 2.8531 - 2.5922 1.00 2729 144 0.1502 0.1820 REMARK 3 5 2.5922 - 2.4065 1.00 2721 143 0.1415 0.1812 REMARK 3 6 2.4065 - 2.2646 1.00 2741 143 0.1431 0.1808 REMARK 3 7 2.2646 - 2.1512 1.00 2719 144 0.1476 0.1929 REMARK 3 8 2.1512 - 2.0576 1.00 2710 143 0.1522 0.2060 REMARK 3 9 2.0576 - 1.9783 1.00 2756 145 0.1628 0.2033 REMARK 3 10 1.9783 - 1.9101 1.00 2671 141 0.1695 0.2153 REMARK 3 11 1.9101 - 1.8504 1.00 2763 144 0.1969 0.2387 REMARK 3 12 1.8504 - 1.7975 1.00 2726 144 0.2088 0.2404 REMARK 3 13 1.7975 - 1.7501 1.00 2717 144 0.2188 0.2786 REMARK 3 14 1.7501 - 1.7074 1.00 2696 140 0.2322 0.2855 REMARK 3 15 1.7074 - 1.6686 0.97 2658 146 0.2557 0.2807 REMARK 3 16 1.6686 - 1.6331 0.92 2527 125 0.2764 0.3045 REMARK 3 17 1.6331 - 1.6004 0.83 2247 125 0.2962 0.2973 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2675 REMARK 3 ANGLE : 1.279 3639 REMARK 3 CHIRALITY : 0.054 402 REMARK 3 PLANARITY : 0.007 470 REMARK 3 DIHEDRAL : 14.285 993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 48:54) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8280 -18.6206 -1.3077 REMARK 3 T TENSOR REMARK 3 T11: 0.8147 T22: 0.6360 REMARK 3 T33: 0.4040 T12: 0.0031 REMARK 3 T13: -0.0898 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 6.8109 L22: 7.2146 REMARK 3 L33: 9.0424 L12: -2.2755 REMARK 3 L13: -3.8997 L23: 7.4651 REMARK 3 S TENSOR REMARK 3 S11: 0.7469 S12: -0.4965 S13: -0.0334 REMARK 3 S21: 0.2053 S22: -0.5321 S23: -0.2111 REMARK 3 S31: -1.5012 S32: -0.0747 S33: -0.1042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 55:147) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1974 -17.8113 6.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.1459 T22: 0.1368 REMARK 3 T33: 0.1962 T12: 0.0019 REMARK 3 T13: 0.0095 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.2335 L22: 1.7944 REMARK 3 L33: 3.4969 L12: -0.4335 REMARK 3 L13: 1.6915 L23: 0.3082 REMARK 3 S TENSOR REMARK 3 S11: 0.2026 S12: 0.0893 S13: -0.3946 REMARK 3 S21: 0.0197 S22: -0.0373 S23: 0.0945 REMARK 3 S31: 0.3095 S32: -0.0469 S33: -0.1057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 148:201) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1286 -4.5546 3.4409 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.1591 REMARK 3 T33: 0.1571 T12: 0.0379 REMARK 3 T13: 0.0087 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.3506 L22: 4.5261 REMARK 3 L33: 2.0670 L12: 2.4473 REMARK 3 L13: 1.3555 L23: 2.2331 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: 0.0986 S13: -0.0759 REMARK 3 S21: -0.1546 S22: -0.1256 S23: 0.1847 REMARK 3 S31: -0.0270 S32: -0.1164 S33: 0.1062 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 202:240) REMARK 3 ORIGIN FOR THE GROUP (A): 44.3763 18.5179 11.3326 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2657 REMARK 3 T33: 0.2232 T12: 0.0344 REMARK 3 T13: 0.0130 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 6.4539 L22: 0.9088 REMARK 3 L33: 1.3610 L12: 2.4521 REMARK 3 L13: 2.9804 L23: 1.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: 0.1068 S13: 0.1356 REMARK 3 S21: 0.1254 S22: 0.0093 S23: 0.0198 REMARK 3 S31: 0.0568 S32: 0.0612 S33: -0.0873 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 241:258) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4833 11.7790 15.6497 REMARK 3 T TENSOR REMARK 3 T11: 0.1642 T22: 0.0629 REMARK 3 T33: 0.0862 T12: -0.0478 REMARK 3 T13: 0.0641 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 4.3752 L22: 5.8917 REMARK 3 L33: 7.5840 L12: -0.6955 REMARK 3 L13: 0.9256 L23: 1.3743 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: -0.4287 S13: 0.0833 REMARK 3 S21: 0.3737 S22: -0.0275 S23: 0.1403 REMARK 3 S31: -0.1530 S32: 0.0141 S33: 0.0090 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 259:342) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8559 11.0474 11.3556 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1436 REMARK 3 T33: 0.1294 T12: 0.0178 REMARK 3 T13: 0.0373 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.5769 L22: 2.5339 REMARK 3 L33: 1.2026 L12: 0.5692 REMARK 3 L13: -0.2094 L23: 0.1011 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.0009 S13: 0.1568 REMARK 3 S21: 0.0677 S22: -0.0099 S23: 0.1305 REMARK 3 S31: -0.1140 S32: -0.0341 S33: -0.0378 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 343:377) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0953 15.9930 0.0471 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.1615 REMARK 3 T33: 0.1315 T12: 0.0113 REMARK 3 T13: 0.0501 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 2.8313 L22: 6.0915 REMARK 3 L33: 5.7874 L12: 1.2677 REMARK 3 L13: 0.5637 L23: 1.6892 REMARK 3 S TENSOR REMARK 3 S11: 0.1468 S12: 0.2158 S13: 0.0918 REMARK 3 S21: -0.2716 S22: -0.0658 S23: -0.0999 REMARK 3 S31: -0.1532 S32: -0.0882 S33: -0.0856 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48039 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Y1W REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.87900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.87900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.47250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.87900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.73625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.87900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.20875 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.87900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.87900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.47250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.87900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 89.20875 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.87900 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.73625 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.75800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2247 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 GLN A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 THR A 42 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 ASP A 47 REMARK 465 GLY A 302 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 GLU A 305 REMARK 465 ASP A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 177 O HOH A 2165 1.44 REMARK 500 HH21 ARG A 263 OE1 GLU A 269 1.48 REMARK 500 HG1 THR A 145 O HOH A 2113 1.54 REMARK 500 O HOH A 2147 O HOH A 2148 2.12 REMARK 500 NH2 ARG A 263 OE1 GLU A 269 2.12 REMARK 500 O HOH A 2050 O HOH A 2051 2.15 REMARK 500 O HOH A 2150 O HOH A 2151 2.16 REMARK 500 NH1 ARG A 177 O HOH A 2165 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 53 26.27 -145.83 REMARK 500 LEU A 164 -50.26 68.83 REMARK 500 LYS A 322 -140.70 54.18 REMARK 500 LYS A 322 -139.06 51.54 REMARK 500 ASN A 352 103.81 -160.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2022 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2036 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2135 DISTANCE = 5.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1378 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2023 O REMARK 620 2 HOH A2024 O 90.1 REMARK 620 3 HOH A2139 O 89.6 176.7 REMARK 620 4 HOH A2143 O 82.9 87.2 96.0 REMARK 620 5 HOH A2354 O 97.1 90.1 86.7 177.3 REMARK 620 6 HOH A2355 O 171.7 89.8 91.0 88.8 91.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1378 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C03 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 REDUCED REMARK 900 RELATED ID: 4C04 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH SINEFUNGIN REMARK 900 RELATED ID: 4C05 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH SAH REMARK 900 RELATED ID: 4C07 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH CACL2 AT 1.5 ANGSTROMS REMARK 900 RELATED ID: 4C08 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH CACL2 AT 1.34 ANGSTROMS DBREF 4C06 A 1 378 UNP Q6NZB1 ANM6_MOUSE 1 378 SEQADV 4C06 ARG A -3 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C06 GLY A -2 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C06 SER A -1 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C06 HIS A 0 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C06 LEU A 315 UNP Q6NZB1 PHE 315 VARIANT SEQRES 1 A 382 ARG GLY SER HIS MET SER LEU SER LYS LYS ARG LYS LEU SEQRES 2 A 382 GLU SER GLY ASP SER GLY GLY ALA GLY ALA GLY GLY GLU SEQRES 3 A 382 GLY ALA GLU GLU GLU ASN GLY GLY GLU GLN GLU ALA ALA SEQRES 4 A 382 PRO PRO ARG PRO ARG ARG THR LYS SER GLU ARG ASP GLN SEQRES 5 A 382 LEU TYR TYR GLU CYS TYR SER ASP VAL SER VAL HIS GLU SEQRES 6 A 382 GLU MET ILE ALA ASP GLN VAL ARG THR GLU ALA TYR ARG SEQRES 7 A 382 LEU GLY ILE LEU LYS ASN TRP ALA ALA LEU ARG GLY LYS SEQRES 8 A 382 THR VAL LEU ASP VAL GLY ALA GLY THR GLY ILE LEU SER SEQRES 9 A 382 ILE PHE CYS ALA GLN ALA GLY ALA ARG ARG VAL TYR ALA SEQRES 10 A 382 VAL GLU ALA SER ALA ILE TRP GLN GLN ALA ARG GLU VAL SEQRES 11 A 382 VAL ARG LEU ASN GLY LEU GLU ASP ARG VAL HIS VAL LEU SEQRES 12 A 382 PRO GLY PRO VAL GLU THR VAL GLU LEU PRO GLU ARG VAL SEQRES 13 A 382 ASP ALA ILE VAL SER GLU TRP MET GLY TYR GLY LEU LEU SEQRES 14 A 382 HIS GLU SER MET LEU SER SER VAL LEU HIS ALA ARG THR SEQRES 15 A 382 LYS TRP LEU LYS GLU GLY GLY LEU LEU LEU PRO ALA SER SEQRES 16 A 382 ALA GLU LEU PHE VAL ALA PRO ILE SER ASP GLN MET LEU SEQRES 17 A 382 GLU TRP ARG LEU GLY PHE TRP SER GLN VAL LYS GLN HIS SEQRES 18 A 382 TYR GLY VAL ASP MET SER CYS MET GLU SER PHE ALA THR SEQRES 19 A 382 ARG CYS LEU MET GLY HIS SER GLU ILE VAL VAL GLN ASP SEQRES 20 A 382 LEU SER GLY GLU ASP VAL LEU ALA ARG PRO GLN ARG PHE SEQRES 21 A 382 ALA GLN LEU GLU LEU ALA ARG ALA GLY LEU GLU GLN GLU SEQRES 22 A 382 LEU GLU ALA GLY VAL GLY GLY ARG PHE ARG CYS SER CYS SEQRES 23 A 382 TYR GLY SER ALA PRO LEU HIS GLY PHE ALA VAL TRP PHE SEQRES 24 A 382 GLN VAL THR PHE PRO GLY GLY ASP SER GLU LYS PRO LEU SEQRES 25 A 382 VAL LEU SER THR SER PRO LEU HIS PRO ALA THR HIS TRP SEQRES 26 A 382 LYS GLN ALA LEU LEU TYR LEU ASN GLU PRO VAL PRO VAL SEQRES 27 A 382 GLU GLN ASP THR ASP ILE SER GLY GLU ILE THR LEU LEU SEQRES 28 A 382 PRO SER PRO ASP ASN PRO ARG ARG LEU ARG ILE LEU LEU SEQRES 29 A 382 ARG TYR LYS VAL GLY ASP HIS GLU GLU LYS THR LYS ASP SEQRES 30 A 382 PHE ALA MET GLU ASP HET MG A1378 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ FORMUL 3 HOH *355(H2 O) HELIX 1 1 CYS A 53 ALA A 65 1 13 HELIX 2 2 ASP A 66 LYS A 79 1 14 HELIX 3 3 ASN A 80 ARG A 85 1 6 HELIX 4 4 GLY A 97 ALA A 106 1 10 HELIX 5 5 ILE A 119 ASN A 130 1 12 HELIX 6 6 MET A 169 TRP A 180 1 12 HELIX 7 7 ASP A 201 GLY A 219 1 19 HELIX 8 8 CYS A 224 GLY A 235 1 12 HELIX 9 9 SER A 245 ASP A 248 5 4 HELIX 10 10 GLY A 265 GLY A 273 1 9 SHEET 1 AA 5 VAL A 136 PRO A 140 0 SHEET 2 AA 5 ARG A 110 GLU A 115 1 O VAL A 111 N HIS A 137 SHEET 3 AA 5 THR A 88 VAL A 92 1 O VAL A 89 N TYR A 112 SHEET 4 AA 5 VAL A 152 VAL A 156 1 N ASP A 153 O THR A 88 SHEET 5 AA 5 LEU A 181 LEU A 188 1 N LYS A 182 O VAL A 152 SHEET 1 AB 4 GLN A 254 GLU A 260 0 SHEET 2 AB 4 SER A 191 ILE A 199 -1 O ALA A 192 N LEU A 259 SHEET 3 AB 4 ALA A 286 PHE A 299 -1 N HIS A 289 O ILE A 199 SHEET 4 AB 4 LEU A 308 SER A 311 -1 O LEU A 308 N PHE A 299 SHEET 1 AC 9 GLN A 254 GLU A 260 0 SHEET 2 AC 9 SER A 191 ILE A 199 -1 O ALA A 192 N LEU A 259 SHEET 3 AC 9 ALA A 286 PHE A 299 -1 N HIS A 289 O ILE A 199 SHEET 4 AC 9 GLN A 323 VAL A 334 -1 O ALA A 324 N VAL A 293 SHEET 5 AC 9 GLU A 238 GLN A 242 -1 O VAL A 240 N LEU A 325 SHEET 6 AC 9 LYS A 370 MET A 376 1 O ALA A 375 N ILE A 239 SHEET 7 AC 9 LEU A 356 VAL A 364 -1 O LEU A 356 N MET A 376 SHEET 8 AC 9 ASP A 339 PRO A 348 -1 O SER A 341 N LYS A 363 SHEET 9 AC 9 VAL A 274 SER A 281 -1 O VAL A 274 N LEU A 346 SHEET 1 AD 2 LEU A 308 SER A 311 0 SHEET 2 AD 2 ALA A 286 PHE A 299 -1 O VAL A 297 N LEU A 310 SSBOND 1 CYS A 53 CYS A 232 1555 6655 2.05 LINK MG MG A1378 O HOH A2023 1555 1555 1.98 LINK MG MG A1378 O HOH A2024 1555 1555 2.08 LINK MG MG A1378 O HOH A2139 1555 1555 2.12 LINK MG MG A1378 O HOH A2143 1555 1555 2.14 LINK MG MG A1378 O HOH A2354 1555 1555 2.12 LINK MG MG A1378 O HOH A2355 1555 1555 1.98 CISPEP 1 LEU A 188 PRO A 189 0 -9.88 SITE 1 AC1 6 HOH A2023 HOH A2024 HOH A2139 HOH A2143 SITE 2 AC1 6 HOH A2354 HOH A2355 CRYST1 79.758 79.758 118.945 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008407 0.00000