HEADER TRANSFERASE 31-JUL-13 4C07 TITLE CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE TITLE 2 PRMT6 WITH CACL2 AT 1.5 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 5 EC: 2.1.1.-, 2.1.1.125 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.BONNEFOND,V.CURA,N.TROFFER-CHARLIER,J.MAILLIOT,J.M.WURTZ, AUTHOR 2 J.CAVARELLI REVDAT 5 23-OCT-24 4C07 1 REMARK REVDAT 4 20-DEC-23 4C07 1 REMARK LINK ATOM REVDAT 3 12-AUG-15 4C07 1 JRNL REVDAT 2 01-JUL-15 4C07 1 JRNL REVDAT 1 30-JUL-14 4C07 0 JRNL AUTH L.BONNEFOND,J.STOJKO,J.MAILLIOT,N.TROFFER-CHARLIER,V.CURA, JRNL AUTH 2 J.M.WURTZ,S.CIANFERANI,J.CAVARELLI JRNL TITL FUNCTIONAL INSIGHTS FROM HIGH RESOLUTION STRUCTURES OF MOUSE JRNL TITL 2 PROTEIN ARGININE METHYLTRANSFERASE 6. JRNL REF J.STRUCT.BIOL. V. 191 175 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 26094878 JRNL DOI 10.1016/J.JSB.2015.06.017 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 58495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4224 - 4.0690 0.95 2840 150 0.0893 0.1139 REMARK 3 2 4.0690 - 3.2304 0.95 2843 150 0.0968 0.1373 REMARK 3 3 3.2304 - 2.8223 0.95 2794 147 0.1218 0.1639 REMARK 3 4 2.8223 - 2.5643 0.95 2826 148 0.1318 0.1547 REMARK 3 5 2.5643 - 2.3805 0.95 2806 146 0.1407 0.1563 REMARK 3 6 2.3805 - 2.2402 0.95 2820 152 0.1468 0.1500 REMARK 3 7 2.2402 - 2.1280 0.95 2803 147 0.1500 0.1687 REMARK 3 8 2.1280 - 2.0354 0.95 2782 145 0.1588 0.1878 REMARK 3 9 2.0354 - 1.9571 0.95 2812 149 0.1568 0.1749 REMARK 3 10 1.9571 - 1.8895 0.95 2813 146 0.1688 0.1880 REMARK 3 11 1.8895 - 1.8305 0.95 2781 144 0.1720 0.2028 REMARK 3 12 1.8305 - 1.7781 0.95 2803 147 0.1868 0.2043 REMARK 3 13 1.7781 - 1.7313 0.95 2823 153 0.1915 0.1913 REMARK 3 14 1.7313 - 1.6891 0.95 2809 149 0.2037 0.2242 REMARK 3 15 1.6891 - 1.6507 0.95 2777 149 0.2061 0.2080 REMARK 3 16 1.6507 - 1.6156 0.95 2809 139 0.2090 0.2410 REMARK 3 17 1.6156 - 1.5832 0.94 2772 150 0.2399 0.2653 REMARK 3 18 1.5832 - 1.5534 0.93 2742 149 0.2470 0.2471 REMARK 3 19 1.5534 - 1.5256 0.91 2667 128 0.2608 0.2766 REMARK 3 20 1.5256 - 1.4998 0.82 2429 138 0.2816 0.2895 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4400 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2623 REMARK 3 ANGLE : 1.264 3559 REMARK 3 CHIRALITY : 0.067 392 REMARK 3 PLANARITY : 0.006 459 REMARK 3 DIHEDRAL : 14.747 959 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 49:54) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9073 -17.4307 -1.4257 REMARK 3 T TENSOR REMARK 3 T11: 0.3663 T22: 0.3089 REMARK 3 T33: 0.2742 T12: -0.0113 REMARK 3 T13: 0.0668 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 7.4068 L22: 4.9139 REMARK 3 L33: 5.4536 L12: -6.0101 REMARK 3 L13: -6.2423 L23: 4.9806 REMARK 3 S TENSOR REMARK 3 S11: 0.5810 S12: 0.1480 S13: 0.8363 REMARK 3 S21: -0.5947 S22: 0.2810 S23: -0.3355 REMARK 3 S31: -0.7477 S32: -0.1887 S33: -0.7853 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 55:147) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2316 -17.7559 7.0332 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0917 REMARK 3 T33: 0.1350 T12: 0.0001 REMARK 3 T13: -0.0007 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.9726 L22: 1.8473 REMARK 3 L33: 2.8142 L12: -0.4252 REMARK 3 L13: 0.4077 L23: 0.3275 REMARK 3 S TENSOR REMARK 3 S11: 0.1002 S12: 0.0957 S13: -0.2031 REMARK 3 S21: 0.0291 S22: 0.0013 S23: 0.0572 REMARK 3 S31: 0.1755 S32: -0.0882 S33: -0.0587 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 148:201) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0843 -4.5180 3.5802 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.1117 REMARK 3 T33: 0.1342 T12: 0.0245 REMARK 3 T13: 0.0020 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.1303 L22: 2.6565 REMARK 3 L33: 1.3475 L12: 1.0750 REMARK 3 L13: 0.5053 L23: 1.1673 REMARK 3 S TENSOR REMARK 3 S11: 0.0443 S12: 0.0826 S13: -0.0332 REMARK 3 S21: -0.0075 S22: -0.0823 S23: 0.1391 REMARK 3 S31: 0.0282 S32: -0.0927 S33: 0.0353 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 202:240) REMARK 3 ORIGIN FOR THE GROUP (A): 44.1504 18.4085 11.4005 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.1387 REMARK 3 T33: 0.1437 T12: 0.0192 REMARK 3 T13: 0.0177 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 6.2669 L22: 1.7461 REMARK 3 L33: 2.0306 L12: 3.1817 REMARK 3 L13: 3.4078 L23: 1.8823 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.0245 S13: 0.0278 REMARK 3 S21: 0.0902 S22: 0.0355 S23: 0.0480 REMARK 3 S31: 0.0314 S32: 0.0500 S33: -0.0777 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 241:258) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4956 11.7565 15.6106 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.0206 REMARK 3 T33: 0.0863 T12: -0.0412 REMARK 3 T13: 0.0504 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.3995 L22: 5.8661 REMARK 3 L33: 5.9412 L12: -0.9942 REMARK 3 L13: 0.1391 L23: 1.1973 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: -0.3139 S13: 0.1425 REMARK 3 S21: 0.2176 S22: -0.0440 S23: -0.0750 REMARK 3 S31: -0.1271 S32: 0.0211 S33: -0.0399 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 259:342) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6664 10.9962 11.5267 REMARK 3 T TENSOR REMARK 3 T11: 0.0826 T22: 0.0936 REMARK 3 T33: 0.1078 T12: 0.0201 REMARK 3 T13: 0.0363 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.4718 L22: 2.3827 REMARK 3 L33: 0.9516 L12: 0.7367 REMARK 3 L13: 0.2675 L23: 0.4761 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.0125 S13: 0.0699 REMARK 3 S21: 0.0606 S22: -0.0157 S23: 0.0456 REMARK 3 S31: -0.0729 S32: -0.0033 S33: -0.0141 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 343:377) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1430 16.0056 -0.0462 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1049 REMARK 3 T33: 0.1149 T12: 0.0004 REMARK 3 T13: 0.0361 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 2.8123 L22: 5.6794 REMARK 3 L33: 5.2499 L12: 0.9616 REMARK 3 L13: 0.4347 L23: 3.3312 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.0721 S13: 0.0906 REMARK 3 S21: -0.2608 S22: 0.0079 S23: -0.0154 REMARK 3 S31: -0.2478 S32: -0.0092 S33: -0.0232 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRERESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 1.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Y1W REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 8.0, 200 MM CACL2, 12% REMARK 280 PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.87000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.28600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.64300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.87000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.92900 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.28600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.87000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 88.92900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.87000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.64300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.74000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 GLN A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 THR A 42 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 ASP A 47 REMARK 465 GLN A 48 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 GLU A 305 REMARK 465 ASP A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 177 O HOH A 2105 1.55 REMARK 500 HE21 GLN A 121 O HOH A 2052 1.58 REMARK 500 HH12 ARG A 110 OE2 GLU A 150 1.60 REMARK 500 OE1 GLU A 369 O HOH A 2243 2.09 REMARK 500 O HOH A 2173 O HOH A 2175 2.09 REMARK 500 O HOH A 2145 O HOH A 2148 2.10 REMARK 500 O CYS A 224 O HOH A 2132 2.10 REMARK 500 OE1 GLN A 336 O HOH A 2224 2.11 REMARK 500 O HOH A 2054 O HOH A 2066 2.12 REMARK 500 O HOH A 2248 O HOH A 2250 2.13 REMARK 500 O GLY A 246 O HOH A 2153 2.14 REMARK 500 O HOH A 2064 O HOH A 2154 2.16 REMARK 500 NH1 ARG A 177 O HOH A 2105 2.16 REMARK 500 O HOH A 2041 O HOH A 2090 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2017 O HOH A 2201 4554 2.05 REMARK 500 O HOH A 2156 O HOH A 2250 8555 2.08 REMARK 500 O HOH A 2189 O HOH A 2237 8555 2.10 REMARK 500 O HOH A 2156 O HOH A 2248 8555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 164 -49.94 69.88 REMARK 500 PRO A 300 150.56 -48.06 REMARK 500 LYS A 322 -133.71 46.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1377 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 158 OE1 REMARK 620 2 GLU A 158 OE2 48.2 REMARK 620 3 MET A 160 O 80.9 120.5 REMARK 620 4 HOH A2014 O 119.3 84.6 154.7 REMARK 620 5 HOH A2084 O 86.2 117.9 79.6 86.3 REMARK 620 6 HOH A2089 O 151.2 160.0 73.0 83.4 77.3 REMARK 620 7 HOH A2090 O 122.1 103.4 76.4 101.6 138.6 63.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1378 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 167 OE1 REMARK 620 2 GLU A 167 OE2 44.7 REMARK 620 3 HOH A2097 O 92.7 101.7 REMARK 620 4 HOH A2252 O 162.4 129.6 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1379 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 242 OE1 REMARK 620 2 ASP A 243 OD1 79.3 REMARK 620 3 HOH A2146 O 138.7 70.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1381 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 255 O REMARK 620 2 HOH A2162 O 76.5 REMARK 620 3 HOH A2163 O 66.8 128.0 REMARK 620 4 HOH A2164 O 81.5 59.3 79.4 REMARK 620 5 HOH A2168 O 105.6 153.6 74.3 146.9 REMARK 620 6 HOH A2256 O 100.8 76.8 143.7 134.4 77.0 REMARK 620 7 HOH A2257 O 154.9 110.2 91.8 81.7 79.3 104.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1380 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 275 O REMARK 620 2 HOH A2167 O 80.1 REMARK 620 3 HOH A2178 O 83.7 97.9 REMARK 620 4 HOH A2254 O 166.4 113.0 90.8 REMARK 620 5 HOH A2255 O 134.2 54.7 107.2 59.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1382 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 339 OD1 REMARK 620 2 ASP A 339 OD2 46.9 REMARK 620 3 HOH A2191 O 63.1 97.4 REMARK 620 4 HOH A2258 O 128.3 165.8 71.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C03 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 REDUCED REMARK 900 RELATED ID: 4C04 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH SINEFUNGIN REMARK 900 RELATED ID: 4C05 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH SAH REMARK 900 RELATED ID: 4C06 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH MGCL2 REMARK 900 RELATED ID: 4C08 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH CACL2 AT 1.34 ANGSTROMS DBREF 4C07 A 1 378 UNP Q6NZB1 ANM6_MOUSE 1 378 SEQADV 4C07 ARG A -3 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C07 GLY A -2 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C07 SER A -1 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C07 HIS A 0 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C07 LEU A 315 UNP Q6NZB1 PHE 315 VARIANT SEQRES 1 A 382 ARG GLY SER HIS MET SER LEU SER LYS LYS ARG LYS LEU SEQRES 2 A 382 GLU SER GLY ASP SER GLY GLY ALA GLY ALA GLY GLY GLU SEQRES 3 A 382 GLY ALA GLU GLU GLU ASN GLY GLY GLU GLN GLU ALA ALA SEQRES 4 A 382 PRO PRO ARG PRO ARG ARG THR LYS SER GLU ARG ASP GLN SEQRES 5 A 382 LEU TYR TYR GLU CYS TYR SER ASP VAL SER VAL HIS GLU SEQRES 6 A 382 GLU MET ILE ALA ASP GLN VAL ARG THR GLU ALA TYR ARG SEQRES 7 A 382 LEU GLY ILE LEU LYS ASN TRP ALA ALA LEU ARG GLY LYS SEQRES 8 A 382 THR VAL LEU ASP VAL GLY ALA GLY THR GLY ILE LEU SER SEQRES 9 A 382 ILE PHE CYS ALA GLN ALA GLY ALA ARG ARG VAL TYR ALA SEQRES 10 A 382 VAL GLU ALA SER ALA ILE TRP GLN GLN ALA ARG GLU VAL SEQRES 11 A 382 VAL ARG LEU ASN GLY LEU GLU ASP ARG VAL HIS VAL LEU SEQRES 12 A 382 PRO GLY PRO VAL GLU THR VAL GLU LEU PRO GLU ARG VAL SEQRES 13 A 382 ASP ALA ILE VAL SER GLU TRP MET GLY TYR GLY LEU LEU SEQRES 14 A 382 HIS GLU SER MET LEU SER SER VAL LEU HIS ALA ARG THR SEQRES 15 A 382 LYS TRP LEU LYS GLU GLY GLY LEU LEU LEU PRO ALA SER SEQRES 16 A 382 ALA GLU LEU PHE VAL ALA PRO ILE SER ASP GLN MET LEU SEQRES 17 A 382 GLU TRP ARG LEU GLY PHE TRP SER GLN VAL LYS GLN HIS SEQRES 18 A 382 TYR GLY VAL ASP MET SER CYS MET GLU SER PHE ALA THR SEQRES 19 A 382 ARG CYS LEU MET GLY HIS SER GLU ILE VAL VAL GLN ASP SEQRES 20 A 382 LEU SER GLY GLU ASP VAL LEU ALA ARG PRO GLN ARG PHE SEQRES 21 A 382 ALA GLN LEU GLU LEU ALA ARG ALA GLY LEU GLU GLN GLU SEQRES 22 A 382 LEU GLU ALA GLY VAL GLY GLY ARG PHE ARG CYS SER CYS SEQRES 23 A 382 TYR GLY SER ALA PRO LEU HIS GLY PHE ALA VAL TRP PHE SEQRES 24 A 382 GLN VAL THR PHE PRO GLY GLY ASP SER GLU LYS PRO LEU SEQRES 25 A 382 VAL LEU SER THR SER PRO LEU HIS PRO ALA THR HIS TRP SEQRES 26 A 382 LYS GLN ALA LEU LEU TYR LEU ASN GLU PRO VAL PRO VAL SEQRES 27 A 382 GLU GLN ASP THR ASP ILE SER GLY GLU ILE THR LEU LEU SEQRES 28 A 382 PRO SER PRO ASP ASN PRO ARG ARG LEU ARG ILE LEU LEU SEQRES 29 A 382 ARG TYR LYS VAL GLY ASP HIS GLU GLU LYS THR LYS ASP SEQRES 30 A 382 PHE ALA MET GLU ASP HET CA A1377 1 HET CA A1378 1 HET CA A1379 1 HET CA A1380 1 HET CA A1381 1 HET CA A1382 1 HETNAM CA CALCIUM ION FORMUL 2 CA 6(CA 2+) FORMUL 8 HOH *259(H2 O) HELIX 1 1 CYS A 53 ALA A 65 1 13 HELIX 2 2 ASP A 66 LYS A 79 1 14 HELIX 3 3 ASN A 80 ARG A 85 1 6 HELIX 4 4 GLY A 97 ALA A 106 1 10 HELIX 5 5 ILE A 119 ASN A 130 1 12 HELIX 6 6 MET A 169 TRP A 180 1 12 HELIX 7 7 ASP A 201 PHE A 210 1 10 HELIX 8 8 GLN A 213 GLY A 219 1 7 HELIX 9 9 CYS A 224 GLY A 235 1 12 HELIX 10 10 SER A 245 ASP A 248 5 4 HELIX 11 11 GLY A 265 GLY A 273 1 9 SHEET 1 AA 5 VAL A 136 PRO A 140 0 SHEET 2 AA 5 ARG A 110 GLU A 115 1 O VAL A 111 N HIS A 137 SHEET 3 AA 5 THR A 88 VAL A 92 1 O VAL A 89 N TYR A 112 SHEET 4 AA 5 VAL A 152 VAL A 156 1 N ASP A 153 O THR A 88 SHEET 5 AA 5 LEU A 181 LEU A 188 1 N LYS A 182 O VAL A 152 SHEET 1 AB 4 VAL A 240 GLN A 242 0 SHEET 2 AB 4 GLN A 323 VAL A 334 -1 O GLN A 323 N GLN A 242 SHEET 3 AB 4 ALA A 286 PHE A 299 -1 O ALA A 286 N VAL A 334 SHEET 4 AB 4 LEU A 308 SER A 311 -1 O LEU A 308 N PHE A 299 SHEET 1 AC 5 VAL A 240 GLN A 242 0 SHEET 2 AC 5 GLN A 323 VAL A 334 -1 O GLN A 323 N GLN A 242 SHEET 3 AC 5 ALA A 286 PHE A 299 -1 O ALA A 286 N VAL A 334 SHEET 4 AC 5 SER A 191 ILE A 199 -1 O SER A 191 N THR A 298 SHEET 5 AC 5 GLN A 254 GLU A 260 -1 O GLN A 254 N VAL A 196 SHEET 1 AD 2 LEU A 308 SER A 311 0 SHEET 2 AD 2 ALA A 286 PHE A 299 -1 O VAL A 297 N LEU A 310 SHEET 1 AE 4 VAL A 274 SER A 281 0 SHEET 2 AE 4 ASP A 339 PRO A 348 -1 O ILE A 340 N CYS A 280 SHEET 3 AE 4 LEU A 356 VAL A 364 -1 O ARG A 357 N LEU A 347 SHEET 4 AE 4 LYS A 370 ALA A 375 -1 O LYS A 370 N TYR A 362 SSBOND 1 CYS A 53 CYS A 232 1555 6655 2.04 LINK OE1 GLU A 158 CA CA A1377 1555 1555 2.68 LINK OE2 GLU A 158 CA CA A1377 1555 1555 2.70 LINK O MET A 160 CA CA A1377 1555 1555 2.67 LINK OE1 GLU A 167 CA CA A1378 1555 1555 3.07 LINK OE2 GLU A 167 CA CA A1378 1555 1555 2.47 LINK OE1 GLN A 242 CA CA A1379 1555 1555 2.37 LINK OD1 ASP A 243 CA CA A1379 1555 1555 2.29 LINK O ARG A 255 CA CA A1381 1555 1555 2.59 LINK O GLY A 275 CA CA A1380 1555 1555 2.27 LINK OD1 ASP A 339 CA CA A1382 1555 1555 2.89 LINK OD2 ASP A 339 CA CA A1382 1555 1555 2.52 LINK CA CA A1377 O HOH A2014 1555 1555 2.17 LINK CA CA A1377 O HOH A2084 1555 1555 2.39 LINK CA CA A1377 O HOH A2089 1555 1555 2.10 LINK CA CA A1377 O HOH A2090 1555 1555 2.45 LINK CA CA A1378 O HOH A2097 1555 1555 2.62 LINK CA CA A1378 O HOH A2252 1555 1555 2.29 LINK CA CA A1379 O HOH A2146 1555 1555 2.48 LINK CA CA A1380 O HOH A2167 1555 1555 2.51 LINK CA CA A1380 O HOH A2178 1555 1555 2.25 LINK CA CA A1380 O HOH A2254 1555 1555 2.37 LINK CA CA A1380 O HOH A2255 1555 1555 2.93 LINK CA CA A1381 O HOH A2162 1555 1555 2.81 LINK CA CA A1381 O HOH A2163 1555 1555 2.85 LINK CA CA A1381 O HOH A2164 1555 1555 2.61 LINK CA CA A1381 O HOH A2168 1555 1555 2.40 LINK CA CA A1381 O HOH A2256 1555 1555 2.58 LINK CA CA A1381 O HOH A2257 1555 1555 2.28 LINK CA CA A1382 O HOH A2191 1555 1555 2.43 LINK CA CA A1382 O HOH A2258 1555 1555 2.72 CISPEP 1 LEU A 188 PRO A 189 0 -9.72 SITE 1 AC1 6 GLU A 158 MET A 160 HOH A2014 HOH A2084 SITE 2 AC1 6 HOH A2089 HOH A2090 SITE 1 AC2 3 GLU A 167 HOH A2097 HOH A2252 SITE 1 AC3 3 GLN A 242 ASP A 243 HOH A2146 SITE 1 AC4 5 GLY A 275 HOH A2167 HOH A2178 HOH A2254 SITE 2 AC4 5 HOH A2255 SITE 1 AC5 7 ARG A 255 HOH A2162 HOH A2163 HOH A2164 SITE 2 AC5 7 HOH A2168 HOH A2256 HOH A2257 SITE 1 AC6 3 ASP A 339 HOH A2191 HOH A2258 CRYST1 79.740 79.740 118.572 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012541 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008434 0.00000