HEADER TRANSFERASE 31-JUL-13 4C08 TITLE CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE TITLE 2 PRMT6 WITH CACL2 AT 1.34 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 5 EC: 2.1.1.-, 2.1.1.125 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090 KEYWDS TRANSFERASE, S-ADENOSYL-L-METHIONINE EXPDTA X-RAY DIFFRACTION AUTHOR L.BONNEFOND,V.CURA,N.TROFFER-CHARLIER,J.MAILLIOT,J.M.WURTZ, AUTHOR 2 J.CAVARELLI REVDAT 4 20-DEC-23 4C08 1 REMARK LINK ATOM REVDAT 3 12-AUG-15 4C08 1 JRNL REVDAT 2 01-JUL-15 4C08 1 JRNL REVDAT 1 30-JUL-14 4C08 0 JRNL AUTH L.BONNEFOND,J.STOJKO,J.MAILLIOT,N.TROFFER-CHARLIER,V.CURA, JRNL AUTH 2 J.M.WURTZ,S.CIANFERANI,J.CAVARELLI JRNL TITL FUNCTIONAL INSIGHTS FROM HIGH RESOLUTION STRUCTURES OF MOUSE JRNL TITL 2 PROTEIN ARGININE METHYLTRANSFERASE 6. JRNL REF J.STRUCT.BIOL. V. 191 175 2015 JRNL REFN ISSN 1047-8477 JRNL PMID 26094878 JRNL DOI 10.1016/J.JSB.2015.06.017 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 81555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9938 - 4.1090 1.00 2737 144 0.1567 0.1661 REMARK 3 2 4.1090 - 3.2623 1.00 2711 142 0.1385 0.1667 REMARK 3 3 3.2623 - 2.8502 1.00 2696 142 0.1596 0.1841 REMARK 3 4 2.8502 - 2.5897 1.00 2711 143 0.1486 0.1694 REMARK 3 5 2.5897 - 2.4041 1.00 2666 140 0.1365 0.1484 REMARK 3 6 2.4041 - 2.2624 1.00 2691 142 0.1315 0.1521 REMARK 3 7 2.2624 - 2.1491 1.00 2692 141 0.1222 0.1493 REMARK 3 8 2.1491 - 2.0556 1.00 2718 143 0.1223 0.1438 REMARK 3 9 2.0556 - 1.9764 1.00 2666 141 0.1217 0.1359 REMARK 3 10 1.9764 - 1.9082 1.00 2689 141 0.1207 0.1619 REMARK 3 11 1.9082 - 1.8486 1.00 2654 140 0.1180 0.1426 REMARK 3 12 1.8486 - 1.7957 1.00 2719 143 0.1188 0.1486 REMARK 3 13 1.7957 - 1.7485 1.00 2691 142 0.1151 0.1768 REMARK 3 14 1.7485 - 1.7058 1.00 2693 142 0.1150 0.1283 REMARK 3 15 1.7058 - 1.6670 1.00 2679 141 0.1133 0.1645 REMARK 3 16 1.6670 - 1.6316 1.00 2674 140 0.1065 0.1426 REMARK 3 17 1.6316 - 1.5989 1.00 2670 141 0.1115 0.1394 REMARK 3 18 1.5989 - 1.5688 1.00 2696 142 0.1176 0.1538 REMARK 3 19 1.5688 - 1.5407 1.00 2664 140 0.1200 0.1332 REMARK 3 20 1.5407 - 1.5146 1.00 2700 142 0.1368 0.1758 REMARK 3 21 1.5146 - 1.4902 1.00 2673 141 0.1279 0.1761 REMARK 3 22 1.4902 - 1.4673 1.00 2698 142 0.1490 0.1714 REMARK 3 23 1.4673 - 1.4457 1.00 2689 141 0.1525 0.2001 REMARK 3 24 1.4457 - 1.4253 1.00 2678 141 0.1663 0.1794 REMARK 3 25 1.4253 - 1.4061 1.00 2678 141 0.1787 0.2071 REMARK 3 26 1.4061 - 1.3878 1.00 2679 140 0.2021 0.2302 REMARK 3 27 1.3878 - 1.3705 0.99 2647 140 0.2479 0.2782 REMARK 3 28 1.3705 - 1.3539 0.96 2609 137 0.2780 0.3285 REMARK 3 29 1.3539 - 1.3382 0.87 2310 122 0.3002 0.3956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2711 REMARK 3 ANGLE : 1.232 3697 REMARK 3 CHIRALITY : 0.076 408 REMARK 3 PLANARITY : 0.006 478 REMARK 3 DIHEDRAL : 13.482 1020 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1290057870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 33.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Y1W REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.0, 200 MM CACL2, 19% REMARK 280 PEG 1500 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.66250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 39.66250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.20550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.66250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.60275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.66250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.80825 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.66250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.66250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.20550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 39.66250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 88.80825 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 39.66250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.60275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.32500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 GLN A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 THR A 42 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 ASP A 47 REMARK 465 GLN A 48 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 GLU A 305 REMARK 465 GLU A 377 REMARK 465 ASP A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2049 O HOH A 2055 2.00 REMARK 500 O HOH A 2251 O HOH A 2284 2.10 REMARK 500 O HOH A 2156 O HOH A 2157 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 164 -51.88 68.39 REMARK 500 LYS A 322 -140.27 53.48 REMARK 500 ASN A 352 105.63 -167.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1379 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 158 OE1 REMARK 620 2 GLU A 158 OE2 47.7 REMARK 620 3 MET A 160 O 88.3 122.9 REMARK 620 4 HOH A2019 O 126.6 99.0 138.1 REMARK 620 5 HOH A2125 O 88.7 120.5 85.5 74.3 REMARK 620 6 HOH A2129 O 161.8 150.2 79.8 60.1 76.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1379 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 158 OE1 REMARK 620 2 GLU A 158 OE2 48.2 REMARK 620 3 HOH A2019 O 146.0 162.3 REMARK 620 4 HOH A2125 O 68.3 116.4 78.4 REMARK 620 5 HOH A2129 O 102.6 135.1 60.7 54.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1382 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 167 OE2 REMARK 620 2 HOH A2137 O 86.4 REMARK 620 3 HOH A2141 O 76.2 85.9 REMARK 620 4 HOH A2143 O 88.7 174.8 91.4 REMARK 620 5 HOH A2144 O 78.1 83.5 152.7 97.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1383 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 242 OE1 REMARK 620 2 ASP A 243 OD1 70.8 REMARK 620 3 HOH A2199 O 76.2 82.1 REMARK 620 4 HOH A2200 O 64.0 65.1 134.4 REMARK 620 5 HOH A2203 O 135.6 73.2 123.3 77.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1381 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 255 O REMARK 620 2 HOH A2223 O 80.4 REMARK 620 3 HOH A2224 O 82.1 76.4 REMARK 620 4 HOH A2225 O 90.9 68.6 145.0 REMARK 620 5 HOH A2226 O 70.0 139.1 72.1 137.0 REMARK 620 6 HOH A2229 O 99.7 135.6 147.9 67.1 78.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1380 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 275 O REMARK 620 2 HOH A2162 O 151.6 REMARK 620 3 HOH A2228 O 75.5 130.7 REMARK 620 4 HOH A2236 O 82.2 86.0 128.8 REMARK 620 5 HOH A2241 O 81.1 70.7 144.6 72.5 REMARK 620 6 HOH A2242 O 88.1 90.8 72.3 152.6 80.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1383 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C03 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 REDUCED REMARK 900 RELATED ID: 4C04 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH SINEFUNGIN REMARK 900 RELATED ID: 4C05 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH SAH REMARK 900 RELATED ID: 4C06 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH MGCL2 REMARK 900 RELATED ID: 4C07 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE REMARK 900 PRMT6 WITH CACL2 AT 1.5 ANGSTROMS DBREF 4C08 A 1 378 UNP Q6NZB1 ANM6_MOUSE 1 378 SEQADV 4C08 ARG A -3 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C08 GLY A -2 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C08 SER A -1 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C08 HIS A 0 UNP Q6NZB1 EXPRESSION TAG SEQADV 4C08 LEU A 315 UNP Q6NZB1 PHE 315 VARIANT SEQRES 1 A 382 ARG GLY SER HIS MET SER LEU SER LYS LYS ARG LYS LEU SEQRES 2 A 382 GLU SER GLY ASP SER GLY GLY ALA GLY ALA GLY GLY GLU SEQRES 3 A 382 GLY ALA GLU GLU GLU ASN GLY GLY GLU GLN GLU ALA ALA SEQRES 4 A 382 PRO PRO ARG PRO ARG ARG THR LYS SER GLU ARG ASP GLN SEQRES 5 A 382 LEU TYR TYR GLU CYS TYR SER ASP VAL SER VAL HIS GLU SEQRES 6 A 382 GLU MET ILE ALA ASP GLN VAL ARG THR GLU ALA TYR ARG SEQRES 7 A 382 LEU GLY ILE LEU LYS ASN TRP ALA ALA LEU ARG GLY LYS SEQRES 8 A 382 THR VAL LEU ASP VAL GLY ALA GLY THR GLY ILE LEU SER SEQRES 9 A 382 ILE PHE CYS ALA GLN ALA GLY ALA ARG ARG VAL TYR ALA SEQRES 10 A 382 VAL GLU ALA SER ALA ILE TRP GLN GLN ALA ARG GLU VAL SEQRES 11 A 382 VAL ARG LEU ASN GLY LEU GLU ASP ARG VAL HIS VAL LEU SEQRES 12 A 382 PRO GLY PRO VAL GLU THR VAL GLU LEU PRO GLU ARG VAL SEQRES 13 A 382 ASP ALA ILE VAL SER GLU TRP MET GLY TYR GLY LEU LEU SEQRES 14 A 382 HIS GLU SER MET LEU SER SER VAL LEU HIS ALA ARG THR SEQRES 15 A 382 LYS TRP LEU LYS GLU GLY GLY LEU LEU LEU PRO ALA SER SEQRES 16 A 382 ALA GLU LEU PHE VAL ALA PRO ILE SER ASP GLN MET LEU SEQRES 17 A 382 GLU TRP ARG LEU GLY PHE TRP SER GLN VAL LYS GLN HIS SEQRES 18 A 382 TYR GLY VAL ASP MET SER CYS MET GLU SER PHE ALA THR SEQRES 19 A 382 ARG CYS LEU MET GLY HIS SER GLU ILE VAL VAL GLN ASP SEQRES 20 A 382 LEU SER GLY GLU ASP VAL LEU ALA ARG PRO GLN ARG PHE SEQRES 21 A 382 ALA GLN LEU GLU LEU ALA ARG ALA GLY LEU GLU GLN GLU SEQRES 22 A 382 LEU GLU ALA GLY VAL GLY GLY ARG PHE ARG CYS SER CYS SEQRES 23 A 382 TYR GLY SER ALA PRO LEU HIS GLY PHE ALA VAL TRP PHE SEQRES 24 A 382 GLN VAL THR PHE PRO GLY GLY ASP SER GLU LYS PRO LEU SEQRES 25 A 382 VAL LEU SER THR SER PRO LEU HIS PRO ALA THR HIS TRP SEQRES 26 A 382 LYS GLN ALA LEU LEU TYR LEU ASN GLU PRO VAL PRO VAL SEQRES 27 A 382 GLU GLN ASP THR ASP ILE SER GLY GLU ILE THR LEU LEU SEQRES 28 A 382 PRO SER PRO ASP ASN PRO ARG ARG LEU ARG ILE LEU LEU SEQRES 29 A 382 ARG TYR LYS VAL GLY ASP HIS GLU GLU LYS THR LYS ASP SEQRES 30 A 382 PHE ALA MET GLU ASP HET 1PE A1378 38 HET CA A1379 2 HET CA A1380 1 HET CA A1381 1 HET CA A1382 1 HET CA A1383 1 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM CA CALCIUM ION HETSYN 1PE PEG400 FORMUL 2 1PE C10 H22 O6 FORMUL 3 CA 5(CA 2+) FORMUL 8 HOH *314(H2 O) HELIX 1 1 CYS A 53 ASP A 66 1 14 HELIX 2 2 ASP A 66 ASN A 80 1 15 HELIX 3 3 ASN A 80 ARG A 85 1 6 HELIX 4 4 GLY A 97 ALA A 106 1 10 HELIX 5 5 ILE A 119 ASN A 130 1 12 HELIX 6 6 MET A 169 TRP A 180 1 12 HELIX 7 7 ASP A 201 GLY A 219 1 19 HELIX 8 8 CYS A 224 GLY A 235 1 12 HELIX 9 9 SER A 245 ASP A 248 5 4 HELIX 10 10 GLY A 265 GLY A 273 1 9 SHEET 1 AA 5 VAL A 136 PRO A 140 0 SHEET 2 AA 5 ARG A 110 GLU A 115 1 O VAL A 111 N HIS A 137 SHEET 3 AA 5 THR A 88 VAL A 92 1 O VAL A 89 N TYR A 112 SHEET 4 AA 5 VAL A 152 VAL A 156 1 N ASP A 153 O THR A 88 SHEET 5 AA 5 LEU A 181 LEU A 188 1 N LYS A 182 O VAL A 152 SHEET 1 AB 4 VAL A 240 GLN A 242 0 SHEET 2 AB 4 GLN A 323 VAL A 334 -1 O GLN A 323 N GLN A 242 SHEET 3 AB 4 ALA A 286 PHE A 299 -1 O ALA A 286 N VAL A 334 SHEET 4 AB 4 LEU A 308 SER A 311 -1 O LEU A 308 N PHE A 299 SHEET 1 AC 5 VAL A 240 GLN A 242 0 SHEET 2 AC 5 GLN A 323 VAL A 334 -1 O GLN A 323 N GLN A 242 SHEET 3 AC 5 ALA A 286 PHE A 299 -1 O ALA A 286 N VAL A 334 SHEET 4 AC 5 SER A 191 ILE A 199 -1 O SER A 191 N THR A 298 SHEET 5 AC 5 GLN A 254 GLU A 260 -1 O GLN A 254 N VAL A 196 SHEET 1 AD 2 LEU A 308 SER A 311 0 SHEET 2 AD 2 ALA A 286 PHE A 299 -1 O VAL A 297 N LEU A 310 SHEET 1 AE 4 VAL A 274 SER A 281 0 SHEET 2 AE 4 ASP A 339 SER A 349 -1 O ILE A 340 N CYS A 280 SHEET 3 AE 4 ASN A 352 VAL A 364 -1 N ASN A 352 O SER A 349 SHEET 4 AE 4 LYS A 370 ALA A 375 -1 O LYS A 370 N TYR A 362 SSBOND 1 CYS A 53 CYS A 232 1555 6655 2.06 LINK OE1 GLU A 158 CA A CA A1379 1555 1555 2.47 LINK OE2 GLU A 158 CA A CA A1379 1555 1555 2.89 LINK OE1 GLU A 158 CA B CA A1379 1555 1555 2.91 LINK OE2 GLU A 158 CA B CA A1379 1555 1555 2.32 LINK O MET A 160 CA A CA A1379 1555 1555 2.45 LINK OE2 GLU A 167 CA CA A1382 1555 1555 2.33 LINK OE1 GLN A 242 CA CA A1383 1555 1555 2.63 LINK OD1 ASP A 243 CA CA A1383 1555 1555 2.26 LINK O ARG A 255 CA CA A1381 1555 1555 2.41 LINK O GLY A 275 CA CA A1380 1555 1555 2.30 LINK CA A CA A1379 O HOH A2019 1555 1555 3.05 LINK CA B CA A1379 O HOH A2019 1555 1555 2.25 LINK CA A CA A1379 O HOH A2125 1555 1555 2.06 LINK CA B CA A1379 O HOH A2125 1555 1555 2.75 LINK CA A CA A1379 O HOH A2129 1555 1555 2.20 LINK CA B CA A1379 O HOH A2129 1555 1555 3.00 LINK CA CA A1380 O HOH A2162 1555 6555 2.38 LINK CA CA A1380 O HOH A2228 1555 1555 2.48 LINK CA CA A1380 O HOH A2236 1555 1555 2.49 LINK CA CA A1380 O HOH A2241 1555 1555 2.32 LINK CA CA A1380 O HOH A2242 1555 1555 2.36 LINK CA CA A1381 O HOH A2223 1555 1555 2.41 LINK CA CA A1381 O HOH A2224 1555 1555 2.27 LINK CA CA A1381 O HOH A2225 1555 1555 2.38 LINK CA CA A1381 O HOH A2226 1555 1555 2.63 LINK CA CA A1381 O HOH A2229 1555 1555 2.65 LINK CA CA A1382 O HOH A2137 1555 1555 2.29 LINK CA CA A1382 O HOH A2141 1555 1555 2.05 LINK CA CA A1382 O HOH A2143 1555 1555 2.40 LINK CA CA A1382 O HOH A2144 1555 1555 2.55 LINK CA CA A1383 O HOH A2199 1555 1555 2.41 LINK CA CA A1383 O HOH A2200 1555 1555 2.66 LINK CA CA A1383 O HOH A2203 1555 1555 2.39 CISPEP 1 LEU A 188 PRO A 189 0 -10.57 SITE 1 AC1 5 TRP A 81 GLN A 105 SER A 117 ALA A 118 SITE 2 AC1 5 GLU A 144 SITE 1 AC2 6 GLU A 158 MET A 160 HOH A2019 HOH A2125 SITE 2 AC2 6 HOH A2126 HOH A2129 SITE 1 AC3 6 GLY A 275 HOH A2162 HOH A2228 HOH A2236 SITE 2 AC3 6 HOH A2241 HOH A2242 SITE 1 AC4 6 ARG A 255 HOH A2223 HOH A2224 HOH A2225 SITE 2 AC4 6 HOH A2226 HOH A2229 SITE 1 AC5 5 GLU A 167 HOH A2137 HOH A2141 HOH A2143 SITE 2 AC5 5 HOH A2144 SITE 1 AC6 5 GLN A 242 ASP A 243 HOH A2199 HOH A2200 SITE 2 AC6 5 HOH A2203 CRYST1 79.325 79.325 118.411 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008445 0.00000