HEADER GENE REGULATION 01-AUG-13 4C0F TITLE STRUCTURE OF THE NOT-BOX DOMAIN OF HUMAN CNOT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: NOT-BOX DOMAIN, RESIDUES 429-540; COMPND 5 SYNONYM: CCR4-ASSOCIATED FACTOR 2, CNOT2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN (PNYC) KEYWDS GENE REGULATION, DEADENYLATION, MRNA DECAY, CCR4-NOT, HYDROLASE, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.BOLAND,Y.CHEN,T.RAISCH,S.JONAS,E.IZAURRALDE,O.WEICHENRIEDER REVDAT 6 08-MAY-24 4C0F 1 REMARK REVDAT 5 18-OCT-17 4C0F 1 REMARK REVDAT 4 20-NOV-13 4C0F 1 JRNL REVDAT 3 23-OCT-13 4C0F 1 JRNL REVDAT 2 16-OCT-13 4C0F 1 JRNL ATOM REVDAT 1 09-OCT-13 4C0F 0 JRNL AUTH A.BOLAND,Y.CHEN,T.RAISCH,S.JONAS,D.KUZUOGLU-OZTURK, JRNL AUTH 2 L.WOHLBOLD,O.WEICHENRIEDER,E.IZAURRALDE JRNL TITL STRUCTURE AND ASSEMBLY OF THE NOT MODULE OF THE HUMAN JRNL TITL 2 CCR4-NOT COMPLEX JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 1289 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 24121232 JRNL DOI 10.1038/NSMB.2681 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3148 - 4.7987 1.00 2816 150 0.2162 0.2524 REMARK 3 2 4.7987 - 3.8093 1.00 2579 135 0.1788 0.2217 REMARK 3 3 3.8093 - 3.3279 0.99 2540 133 0.2031 0.2359 REMARK 3 4 3.3279 - 3.0237 0.99 2497 132 0.2210 0.2446 REMARK 3 5 3.0237 - 2.8070 0.99 2454 129 0.2465 0.3322 REMARK 3 6 2.8070 - 2.6415 0.99 2485 131 0.2717 0.3499 REMARK 3 7 2.6415 - 2.5092 0.99 2429 128 0.2733 0.3930 REMARK 3 8 2.5092 - 2.4000 0.99 2421 128 0.2800 0.3078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 36.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.66120 REMARK 3 B22 (A**2) : 9.66120 REMARK 3 B33 (A**2) : -19.32240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3596 REMARK 3 ANGLE : 0.641 4876 REMARK 3 CHIRALITY : 0.043 480 REMARK 3 PLANARITY : 0.002 626 REMARK 3 DIHEDRAL : 11.688 1305 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE REFINED IN THE RIDING REMARK 3 POSITIONS. SIDE-CHAINS OF THE FOLLOWING RESIDUES WERE TRUNCATED REMARK 3 AT CB ATOMS. CHAIN A, RESIDUES 453, 473, 490. CHAIN B, RESIDUES REMARK 3 424, 438, 496. CHAIN C, RESIDUES 430, 513. CHAIN D, RESIDUES 486, REMARK 3 490. THE FOLLOWING RESIDUES ARE DISORDERED. CHAIN A, RESIDUES REMARK 3 429 TO 432 AND 529 TO 540. CHAIN B, RESIDUES 527 TO 540. CHAIN C, REMARK 3 RESIDUES 537 TO 540. CHAIN D, RESIDUES 429 TO 440. REMARK 4 REMARK 4 4C0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001,0.97945 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 49.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: SELENIUM SITES WERE IDENTIFIED IN DATA SET 2, COLLECTED AT REMARK 200 0.97945 A, PEAK DATA AT THE SE EDGE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRI-SODIUM CITRATE PH=5.6, 10% REMARK 280 PEG4000, 10% ISOPROPANOL, PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 274.86000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 137.43000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 206.14500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.71500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 343.57500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 274.86000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 137.43000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.71500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 206.14500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 343.57500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 424 REMARK 465 GLY A 425 REMARK 465 PRO A 426 REMARK 465 HIS A 427 REMARK 465 MET A 428 REMARK 465 ASP A 429 REMARK 465 LYS A 430 REMARK 465 LEU A 431 REMARK 465 ALA A 432 REMARK 465 SER A 529 REMARK 465 THR A 530 REMARK 465 PHE A 531 REMARK 465 ASN A 532 REMARK 465 TYR A 533 REMARK 465 ASN A 534 REMARK 465 PRO A 535 REMARK 465 ALA A 536 REMARK 465 GLN A 537 REMARK 465 GLN A 538 REMARK 465 ALA A 539 REMARK 465 PHE A 540 REMARK 465 LEU B 527 REMARK 465 PRO B 528 REMARK 465 SER B 529 REMARK 465 THR B 530 REMARK 465 PHE B 531 REMARK 465 ASN B 532 REMARK 465 TYR B 533 REMARK 465 ASN B 534 REMARK 465 PRO B 535 REMARK 465 ALA B 536 REMARK 465 GLN B 537 REMARK 465 GLN B 538 REMARK 465 ALA B 539 REMARK 465 PHE B 540 REMARK 465 GLN C 424 REMARK 465 GLN C 537 REMARK 465 GLN C 538 REMARK 465 ALA C 539 REMARK 465 PHE C 540 REMARK 465 GLN D 424 REMARK 465 GLY D 425 REMARK 465 PRO D 426 REMARK 465 HIS D 427 REMARK 465 MET D 428 REMARK 465 ASP D 429 REMARK 465 LYS D 430 REMARK 465 LEU D 431 REMARK 465 ALA D 432 REMARK 465 ALA D 433 REMARK 465 ILE D 434 REMARK 465 LYS D 435 REMARK 465 LEU D 436 REMARK 465 GLY D 437 REMARK 465 ARG D 438 REMARK 465 TYR D 439 REMARK 465 GLY D 440 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 GLN B 424 CG CD OE1 NE2 REMARK 470 ARG B 438 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 496 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 430 CG CD CE NZ REMARK 470 GLU C 513 CG CD OE1 OE2 REMARK 470 GLU D 486 CG CD OE1 OE2 REMARK 470 LYS D 490 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2014 O HOH C 2021 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG C 476 O TRP D 507 8565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 467 30.58 -96.52 REMARK 500 THR B 491 -158.53 -142.12 REMARK 500 ARG C 524 112.82 -35.21 REMARK 500 MET D 450 59.78 -152.83 REMARK 500 TRP D 507 70.98 48.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED REMARK 700 THE SHEET STRUCTURES OF CHAIN A, B, C, D ARE BIFURCATED. REMARK 700 IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED EACH FOR CHAINS A, B, C, D. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C0D RELATED DB: PDB REMARK 900 STRUCTURE OF THE NOT MODULE OF THE HUMAN CCR4-NOT COMPLEX (CNOT1- REMARK 900 CNOT2-CNOT3) REMARK 900 RELATED ID: 4C0G RELATED DB: PDB REMARK 900 STRUCTURE OF THE NOT-BOX DOMAIN OF HUMAN CNOT3 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FOUR N-TERMINAL RESIDUES REMAIN FROM THE EXPRESSION REMARK 999 TAG. DBREF 4C0F A 429 540 UNP Q9NZN8 CNOT2_HUMAN 429 540 DBREF 4C0F B 429 540 UNP Q9NZN8 CNOT2_HUMAN 429 540 DBREF 4C0F C 429 540 UNP Q9NZN8 CNOT2_HUMAN 429 540 DBREF 4C0F D 429 540 UNP Q9NZN8 CNOT2_HUMAN 429 540 SEQADV 4C0F GLN A 424 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F GLY A 425 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F PRO A 426 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F HIS A 427 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F MET A 428 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F GLN B 424 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F GLY B 425 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F PRO B 426 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F HIS B 427 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F MET B 428 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F GLN C 424 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F GLY C 425 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F PRO C 426 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F HIS C 427 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F MET C 428 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F GLN D 424 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F GLY D 425 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F PRO D 426 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F HIS D 427 UNP Q9NZN8 EXPRESSION TAG SEQADV 4C0F MET D 428 UNP Q9NZN8 EXPRESSION TAG SEQRES 1 A 117 GLN GLY PRO HIS MET ASP LYS LEU ALA ALA ILE LYS LEU SEQRES 2 A 117 GLY ARG TYR GLY GLU ASP LEU LEU PHE TYR LEU TYR TYR SEQRES 3 A 117 MET ASN GLY GLY ASP VAL LEU GLN LEU LEU ALA ALA VAL SEQRES 4 A 117 GLU LEU PHE ASN ARG ASP TRP ARG TYR HIS LYS GLU GLU SEQRES 5 A 117 ARG VAL TRP ILE THR ARG ALA PRO GLY MET GLU PRO THR SEQRES 6 A 117 MET LYS THR ASN THR TYR GLU ARG GLY THR TYR TYR PHE SEQRES 7 A 117 PHE ASP CYS LEU ASN TRP ARG LYS VAL ALA LYS GLU PHE SEQRES 8 A 117 HIS LEU GLU TYR ASP LYS LEU GLU GLU ARG PRO HIS LEU SEQRES 9 A 117 PRO SER THR PHE ASN TYR ASN PRO ALA GLN GLN ALA PHE SEQRES 1 B 117 GLN GLY PRO HIS MET ASP LYS LEU ALA ALA ILE LYS LEU SEQRES 2 B 117 GLY ARG TYR GLY GLU ASP LEU LEU PHE TYR LEU TYR TYR SEQRES 3 B 117 MET ASN GLY GLY ASP VAL LEU GLN LEU LEU ALA ALA VAL SEQRES 4 B 117 GLU LEU PHE ASN ARG ASP TRP ARG TYR HIS LYS GLU GLU SEQRES 5 B 117 ARG VAL TRP ILE THR ARG ALA PRO GLY MET GLU PRO THR SEQRES 6 B 117 MET LYS THR ASN THR TYR GLU ARG GLY THR TYR TYR PHE SEQRES 7 B 117 PHE ASP CYS LEU ASN TRP ARG LYS VAL ALA LYS GLU PHE SEQRES 8 B 117 HIS LEU GLU TYR ASP LYS LEU GLU GLU ARG PRO HIS LEU SEQRES 9 B 117 PRO SER THR PHE ASN TYR ASN PRO ALA GLN GLN ALA PHE SEQRES 1 C 117 GLN GLY PRO HIS MET ASP LYS LEU ALA ALA ILE LYS LEU SEQRES 2 C 117 GLY ARG TYR GLY GLU ASP LEU LEU PHE TYR LEU TYR TYR SEQRES 3 C 117 MET ASN GLY GLY ASP VAL LEU GLN LEU LEU ALA ALA VAL SEQRES 4 C 117 GLU LEU PHE ASN ARG ASP TRP ARG TYR HIS LYS GLU GLU SEQRES 5 C 117 ARG VAL TRP ILE THR ARG ALA PRO GLY MET GLU PRO THR SEQRES 6 C 117 MET LYS THR ASN THR TYR GLU ARG GLY THR TYR TYR PHE SEQRES 7 C 117 PHE ASP CYS LEU ASN TRP ARG LYS VAL ALA LYS GLU PHE SEQRES 8 C 117 HIS LEU GLU TYR ASP LYS LEU GLU GLU ARG PRO HIS LEU SEQRES 9 C 117 PRO SER THR PHE ASN TYR ASN PRO ALA GLN GLN ALA PHE SEQRES 1 D 117 GLN GLY PRO HIS MET ASP LYS LEU ALA ALA ILE LYS LEU SEQRES 2 D 117 GLY ARG TYR GLY GLU ASP LEU LEU PHE TYR LEU TYR TYR SEQRES 3 D 117 MET ASN GLY GLY ASP VAL LEU GLN LEU LEU ALA ALA VAL SEQRES 4 D 117 GLU LEU PHE ASN ARG ASP TRP ARG TYR HIS LYS GLU GLU SEQRES 5 D 117 ARG VAL TRP ILE THR ARG ALA PRO GLY MET GLU PRO THR SEQRES 6 D 117 MET LYS THR ASN THR TYR GLU ARG GLY THR TYR TYR PHE SEQRES 7 D 117 PHE ASP CYS LEU ASN TRP ARG LYS VAL ALA LYS GLU PHE SEQRES 8 D 117 HIS LEU GLU TYR ASP LYS LEU GLU GLU ARG PRO HIS LEU SEQRES 9 D 117 PRO SER THR PHE ASN TYR ASN PRO ALA GLN GLN ALA PHE FORMUL 5 HOH *102(H2 O) HELIX 1 1 GLU A 441 MET A 450 1 10 HELIX 2 2 GLY A 453 ASN A 466 1 14 HELIX 3 3 GLY B 425 GLY B 437 1 13 HELIX 4 4 GLU B 441 TYR B 449 1 9 HELIX 5 5 GLY B 453 ASN B 466 1 14 HELIX 6 6 ASP C 429 LEU C 436 1 8 HELIX 7 7 GLU C 441 MET C 450 1 10 HELIX 8 8 GLY C 453 ASN C 466 1 14 HELIX 9 9 ASP D 442 MET D 450 1 9 HELIX 10 10 GLY D 453 ASN D 466 1 14 SHEET 1 AA 4 ARG A 470 HIS A 472 0 SHEET 2 AA 4 VAL A 477 ARG A 481 -1 O VAL A 477 N HIS A 472 SHEET 3 AA 4 TYR A 494 ASP A 503 -1 O TYR A 500 N ARG A 481 SHEET 4 AA 4 ARG A 508 GLU A 517 -1 O ARG A 508 N ASP A 503 SHEET 1 AB 3 THR A 488 LYS A 490 0 SHEET 2 AB 3 TYR A 494 ASP A 503 -1 O ARG A 496 N THR A 488 SHEET 3 AB 3 ARG A 508 GLU A 517 -1 O ARG A 508 N ASP A 503 SHEET 1 BA 4 ARG B 470 HIS B 472 0 SHEET 2 BA 4 VAL B 477 ARG B 481 -1 O VAL B 477 N HIS B 472 SHEET 3 BA 4 TYR B 494 ASP B 503 -1 O TYR B 500 N ARG B 481 SHEET 4 BA 4 ARG B 508 GLU B 517 -1 O ARG B 508 N ASP B 503 SHEET 1 BB 3 THR B 488 LYS B 490 0 SHEET 2 BB 3 TYR B 494 ASP B 503 -1 O ARG B 496 N THR B 488 SHEET 3 BB 3 ARG B 508 GLU B 517 -1 O ARG B 508 N ASP B 503 SHEET 1 CA 4 ARG C 470 HIS C 472 0 SHEET 2 CA 4 VAL C 477 ARG C 481 -1 O VAL C 477 N HIS C 472 SHEET 3 CA 4 TYR C 494 ASP C 503 -1 O TYR C 500 N ARG C 481 SHEET 4 CA 4 ARG C 508 GLU C 517 -1 O ARG C 508 N ASP C 503 SHEET 1 CB 3 THR C 488 LYS C 490 0 SHEET 2 CB 3 TYR C 494 ASP C 503 -1 O ARG C 496 N THR C 488 SHEET 3 CB 3 ARG C 508 GLU C 517 -1 O ARG C 508 N ASP C 503 SHEET 1 DA 4 ARG D 470 HIS D 472 0 SHEET 2 DA 4 VAL D 477 ARG D 481 -1 O VAL D 477 N HIS D 472 SHEET 3 DA 4 TYR D 494 ASP D 503 -1 O TYR D 500 N ARG D 481 SHEET 4 DA 4 ARG D 508 GLU D 517 -1 O ARG D 508 N ASP D 503 SHEET 1 DB 3 THR D 488 LYS D 490 0 SHEET 2 DB 3 TYR D 494 ASP D 503 -1 O ARG D 496 N THR D 488 SHEET 3 DB 3 ARG D 508 GLU D 517 -1 O ARG D 508 N ASP D 503 CRYST1 64.830 64.830 412.290 90.00 90.00 120.00 P 65 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015425 0.008906 0.000000 0.00000 SCALE2 0.000000 0.017811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002425 0.00000