HEADER HYDROLASE 05-AUG-13 4C0K TITLE CRYSTAL STRUCTURE OF DROSOPHILA MIRO EF HAND AND CGTPASE DOMAINS BOUND TITLE 2 TO ONE CALCIUM ION (CA-MIROS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL RHO GTPASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ELM1, ELM2, AND CGTPASE, RESIDUES 201-617; COMPND 5 SYNONYM: MIRO, DMIRO; COMPND 6 EC: 3.6.5.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET17B; SOURCE 11 OTHER_DETAILS: DROSOPHILA GENOMICS RESOURCE CENTER CLONE RE22983 KEYWDS HYDROLASE, MITOCHONDRIAL TRANSPORT, CALCIUM-BINDING GTPASE, KINESIN, KEYWDS 2 MITOPHAGY, HIDDEN EF HANDS EXPDTA X-RAY DIFFRACTION AUTHOR J.L.KLOSOWIAK,P.J.FOCIA,Z.WAWRZAK,S.CHAKRAVARTHY,E.C.LANDAHL, AUTHOR 2 D.M.FREYMANN,S.E.RICE REVDAT 4 01-MAY-24 4C0K 1 REMARK REVDAT 3 15-NOV-23 4C0K 1 REMARK LINK ATOM REVDAT 2 13-NOV-13 4C0K 1 JRNL REVDAT 1 09-OCT-13 4C0K 0 JRNL AUTH J.L.KLOSOWIAK,P.J.FOCIA,S.CHAKRAVARTHY,E.C.LANDAHL, JRNL AUTH 2 D.M.FREYMANN,S.E.RICE JRNL TITL STRUCTURAL COUPLING OF THE EF HAND AND C-TERMINAL GTPASE JRNL TITL 2 DOMAINS IN THE MITOCHONDRIAL PROTEIN MIRO. JRNL REF EMBO REP. V. 14 968 2013 JRNL REFN ISSN 1469-221X JRNL PMID 24071720 JRNL DOI 10.1038/EMBOR.2013.151 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 15536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2886 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0795 - 7.7114 0.99 1247 138 0.1757 0.1827 REMARK 3 2 7.7114 - 6.1269 1.00 1258 142 0.1945 0.2762 REMARK 3 3 6.1269 - 5.3541 1.00 1241 148 0.1919 0.2426 REMARK 3 4 5.3541 - 4.8654 1.00 1237 133 0.1833 0.2345 REMARK 3 5 4.8654 - 4.5171 1.00 1253 140 0.1730 0.2179 REMARK 3 6 4.5171 - 4.2510 1.00 1246 145 0.1669 0.1410 REMARK 3 7 4.2510 - 4.0383 1.00 1233 138 0.1645 0.2118 REMARK 3 8 4.0383 - 3.8627 1.00 1248 136 0.1862 0.2150 REMARK 3 9 3.8627 - 3.7141 0.99 1237 128 0.1991 0.2085 REMARK 3 10 3.7141 - 3.5860 0.99 1247 132 0.2467 0.2973 REMARK 3 11 3.5860 - 3.4739 1.00 1261 133 0.2289 0.2682 REMARK 3 12 3.4739 - 3.3746 1.00 1239 142 0.2371 0.2707 REMARK 3 13 3.3746 - 3.2858 1.00 1208 146 0.2336 0.2741 REMARK 3 14 3.2858 - 3.2057 1.00 1266 136 0.2510 0.2698 REMARK 3 15 3.2057 - 3.1328 0.99 1276 148 0.2412 0.2944 REMARK 3 16 3.1328 - 3.0662 0.99 1198 125 0.2944 0.3282 REMARK 3 17 3.0662 - 3.0049 0.99 1267 146 0.2997 0.3444 REMARK 3 18 3.0049 - 2.9482 0.99 1189 137 0.3207 0.4514 REMARK 3 19 2.9482 - 2.8955 0.97 1226 145 0.3339 0.3260 REMARK 3 20 2.8955 - 2.8465 0.91 1097 129 0.3126 0.3815 REMARK 3 21 2.8465 - 2.8006 0.85 1073 119 0.3092 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3333 REMARK 3 ANGLE : 0.475 4506 REMARK 3 CHIRALITY : 0.035 497 REMARK 3 PLANARITY : 0.002 574 REMARK 3 DIHEDRAL : 9.783 1230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT NUMBER OF REFLECTIONS TREATS REMARK 3 ANOMALOUS PAIRS SEPARATELY. A LARGE LOOP COMPRISING RESIDUES 434- REMARK 3 441 IS POORLY ORDERED, DESPITE THE SIDECHAINS OF I435 AND L437 REMARK 3 CONTRIBUTING TO A HYDROPHOBIC CRYSTAL CONTACT, AND A SECOND LOOP REMARK 3 COMPRISING RESIDUES 561-566 IS ALSO POORLY ORDERED. RESIDUES OF REMARK 3 BOTH HAVE BEEN BUILT AS ALA OR GLY WHERE SIDECHAIN POSITIONS REMARK 3 COULD NOT BE DETERMINED REMARK 4 REMARK 4 4C0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15693 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: INITIAL MODEL FROM PRIOR DATASET REMARK 200 REMARK 200 REMARK: MOLECULAR REPLACEMENT MODEL WAS A MIRO STRUCTURE REMARK 200 DETERMINED BY SAD PHASING OF SE-MET LABELED PROTEIN. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0MG/ML MIROS, 1.7 M LISO4, 0.1 M BIS REMARK 280 -TRIS PH 7.4, 5 MM EGTA; CRYSTAL SOAKED IN 10MM CACL2 FOR 72H REMARK 280 PRIOR TO DATA COLLECTION. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.29400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.14700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.14700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 104.29400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 201 REMARK 465 MET A 202 REMARK 465 GLU A 203 REMARK 465 GLU A 204 REMARK 465 GLN A 205 REMARK 465 LEU A 610 REMARK 465 ARG A 611 REMARK 465 GLN A 612 REMARK 465 PHE A 613 REMARK 465 GLY A 614 REMARK 465 LEU A 615 REMARK 465 MET A 616 REMARK 465 THR A 617 REMARK 465 HIS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 434 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 436 CG OD1 OD2 REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 ARG A 440 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 441 CG CD OE1 NE2 REMARK 470 ASP A 561 CG OD1 OD2 REMARK 470 MET A 562 CG SD CE REMARK 470 ASP A 563 CG OD1 OD2 REMARK 470 GLU A 564 CG CD OE1 OE2 REMARK 470 ARG A 565 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 566 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 303 -167.04 -104.13 REMARK 500 ASP A 372 -80.94 -140.65 REMARK 500 ASP A 402 75.99 -155.41 REMARK 500 ARG A 434 -168.37 -69.66 REMARK 500 ILE A 435 72.81 -68.55 REMARK 500 SER A 442 42.98 -142.71 REMARK 500 GLU A 564 92.73 -66.79 REMARK 500 ASP A 568 40.55 -78.72 REMARK 500 TYR A 569 -167.57 -106.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2044 DISTANCE = 6.31 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 UNKNOWN ATOM OR ION (UNX): UNIDENTIFIED ATOM REMARK 600 UNKNOWN LIGAND (HSE): UNIDENTIFIED LIGAND MODELED AS REMARK 600 HOMOSERINE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1614 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 OD1 REMARK 620 2 ASP A 227 OD1 68.8 REMARK 620 3 LEU A 229 O 71.2 81.5 REMARK 620 4 GLU A 234 OE2 134.9 141.5 80.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1615 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 343 OD1 REMARK 620 2 ASP A 345 OD1 79.8 REMARK 620 3 ASP A 347 OD1 71.0 81.6 REMARK 620 4 ALA A 349 O 76.5 152.3 77.3 REMARK 620 5 GLU A 354 OE1 115.6 123.6 154.2 80.2 REMARK 620 6 GLU A 354 OE2 102.9 69.4 151.0 130.1 54.5 REMARK 620 7 HOH A2036 O 154.0 95.0 83.1 99.9 88.6 98.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HSE A 1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1615 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C0J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DROSOPHILA MIRO EF HAND AND CGTPASE DOMAINS IN REMARK 900 THE APO STATE (APO-MIROS) REMARK 900 RELATED ID: 4C0L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DROSOPHILA MIRO EF HAND AND CGTPASE DOMAINS REMARK 900 BOUND TO ONE MAGNESIUM ION AND MG: GDP (MGGDP-MIROS) DBREF 4C0K A 201 617 UNP Q8IMX7 MIRO_DROME 201 617 SEQADV 4C0K HIS A 618 UNP Q8IMX7 EXPRESSION TAG SEQADV 4C0K HIS A 619 UNP Q8IMX7 EXPRESSION TAG SEQADV 4C0K HIS A 620 UNP Q8IMX7 EXPRESSION TAG SEQADV 4C0K HIS A 621 UNP Q8IMX7 EXPRESSION TAG SEQADV 4C0K HIS A 622 UNP Q8IMX7 EXPRESSION TAG SEQADV 4C0K HIS A 623 UNP Q8IMX7 EXPRESSION TAG SEQRES 1 A 423 MET MET GLU GLU GLN GLU LEU THR SER ALA CYS LYS LYS SEQRES 2 A 423 SER LEU VAL ARG ILE PHE LYS ILE CYS ASP ILE ASP GLY SEQRES 3 A 423 ASP ASN LEU LEU ASN ASP TYR GLU LEU ASN LEU PHE GLN SEQRES 4 A 423 ARG ARG CYS PHE ASN THR PRO LEU GLN PRO GLN ILE LEU SEQRES 5 A 423 ASP GLU VAL LYS ALA VAL ILE GLN LYS ASN VAL PRO ASP SEQRES 6 A 423 GLY ILE TYR ASN ASP ALA VAL THR LEU LYS GLY PHE LEU SEQRES 7 A 423 PHE LEU HIS CYS LEU PHE ILE GLN ARG GLY ARG ASN GLU SEQRES 8 A 423 THR THR TRP ALA VAL LEU ARG ARG PHE GLY TYR ASN ASP SEQRES 9 A 423 GLN LEU GLU MET CYS GLN GLU TYR LEU ARG PRO PRO LEU SEQRES 10 A 423 LYS ILE PRO PRO GLY SER SER THR GLU LEU SER HIS ARG SEQRES 11 A 423 GLY GLN GLN PHE LEU ILE ALA VAL PHE GLU ARG TYR ASP SEQRES 12 A 423 ARG ASP GLY ASP GLY ALA LEU SER PRO GLU GLU HIS LYS SEQRES 13 A 423 MET LEU PHE SER THR CYS PRO ALA ALA PRO TRP SER TYR SEQRES 14 A 423 SER THR ASP ILE ARG LYS SER CYS PRO ILE ASN GLU THR SEQRES 15 A 423 THR GLY TRP VAL THR LEU HIS GLY TRP LEU CYS ARG TRP SEQRES 16 A 423 THR LEU MET THR LEU ILE ASP VAL VAL LYS THR MET GLU SEQRES 17 A 423 TYR LEU ALA TYR LEU GLY PHE ASN VAL HIS GLU ASN ASP SEQRES 18 A 423 SER GLN LEU ALA ALA ILE HIS VAL THR ARG GLU ARG ARG SEQRES 19 A 423 ILE ASP LEU ALA LYS ARG GLN SER SER ARG SER VAL TYR SEQRES 20 A 423 LYS CYS HIS VAL ILE GLY PRO LYS GLY SER GLY LYS THR SEQRES 21 A 423 GLY MET CYS ARG GLY PHE LEU VAL GLU ASP MET HIS LYS SEQRES 22 A 423 LEU ILE GLY LYS GLU PHE LYS THR ASN VAL VAL ASN CYS SEQRES 23 A 423 ILE ASN SER VAL GLN VAL TYR GLY GLN GLU LYS HIS LEU SEQRES 24 A 423 ILE LEU ARG ASP ILE ASP VAL ARG HIS ALA LEU ASP PRO SEQRES 25 A 423 LEU GLN PRO GLN GLU VAL ASN CYS ASP VAL ALA CYS LEU SEQRES 26 A 423 VAL TYR ASP SER SER ASN PRO ARG SER PHE GLU TYR VAL SEQRES 27 A 423 ALA ARG ILE TYR ILE LYS TYR TYR ALA GLU SER LYS ILE SEQRES 28 A 423 PRO VAL MET ILE VAL GLY THR LYS CYS ASP MET ASP GLU SEQRES 29 A 423 ARG ARG GLN ASP TYR LEU MET GLN PRO SER GLU PHE CYS SEQRES 30 A 423 ASP LYS TYR LYS LEU LEU PRO PRO HIS LEU PHE SER LEU SEQRES 31 A 423 LYS THR ASN LYS LYS GLU LEU TYR THR LYS LEU ALA THR SEQRES 32 A 423 MET ALA ALA PHE PRO HIS LEU ARG GLN PHE GLY LEU MET SEQRES 33 A 423 THR HIS HIS HIS HIS HIS HIS HET HSE A1616 8 HET UNX A1617 1 HET SO4 A1610 5 HET SO4 A1611 5 HET SO4 A1612 5 HET SO4 A1613 5 HET NA A1614 1 HET CA A1615 1 HETNAM HSE L-HOMOSERINE HETNAM UNX UNKNOWN ATOM OR ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 2 HSE C4 H9 N O3 FORMUL 3 UNX X FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 NA NA 1+ FORMUL 9 CA CA 2+ FORMUL 10 HOH *69(H2 O) HELIX 1 1 THR A 208 ASP A 223 1 16 HELIX 2 2 ASN A 231 ASN A 244 1 14 HELIX 3 3 GLN A 248 VAL A 263 1 16 HELIX 4 4 THR A 273 ILE A 285 1 13 HELIX 5 5 ARG A 289 PHE A 300 1 12 HELIX 6 6 CYS A 309 ARG A 314 1 6 HELIX 7 7 SER A 328 TYR A 342 1 15 HELIX 8 8 SER A 351 PHE A 359 1 9 HELIX 9 9 SER A 360 CYS A 362 5 3 HELIX 10 10 ASP A 372 CYS A 377 1 6 HELIX 11 11 LEU A 388 ASP A 402 1 15 HELIX 12 12 ASP A 402 GLY A 414 1 13 HELIX 13 13 GLY A 414 ASN A 420 1 7 HELIX 14 14 SER A 422 ALA A 425 5 4 HELIX 15 15 GLY A 458 GLY A 465 1 8 HELIX 16 16 GLN A 514 ASN A 519 1 6 HELIX 17 17 SER A 534 TYR A 546 1 13 HELIX 18 18 GLN A 572 TYR A 580 1 9 HELIX 19 19 LYS A 595 PHE A 607 1 13 SHEET 1 AA 2 ILE A 267 TYR A 268 0 SHEET 2 AA 2 ALA A 271 VAL A 272 -1 O ALA A 271 N TYR A 268 SHEET 1 AB 2 SER A 324 LEU A 327 0 SHEET 2 AB 2 ILE A 427 THR A 430 -1 O HIS A 428 N GLU A 326 SHEET 1 AC 2 ALA A 349 LEU A 350 0 SHEET 2 AC 2 VAL A 386 THR A 387 -1 O VAL A 386 N LEU A 350 SHEET 1 AD 6 ASN A 485 VAL A 492 0 SHEET 2 AD 6 GLN A 495 ASP A 503 -1 O GLN A 495 N VAL A 492 SHEET 3 AD 6 VAL A 446 ILE A 452 1 O TYR A 447 N ILE A 500 SHEET 4 AD 6 VAL A 522 ASP A 528 1 O VAL A 522 N HIS A 450 SHEET 5 AD 6 VAL A 553 THR A 558 1 O MET A 554 N LEU A 525 SHEET 6 AD 6 HIS A 586 LEU A 587 1 O HIS A 586 N GLY A 557 LINK OD1 ASP A 223 NA NA A1614 1555 1555 2.45 LINK OD1 ASP A 227 NA NA A1614 1555 1555 2.42 LINK O LEU A 229 NA NA A1614 1555 1555 2.66 LINK OE2 GLU A 234 NA NA A1614 1555 1555 3.05 LINK OD1 ASP A 343 CA CA A1615 1555 1555 2.37 LINK OD1 ASP A 345 CA CA A1615 1555 1555 2.34 LINK OD1 ASP A 347 CA CA A1615 1555 1555 2.34 LINK O ALA A 349 CA CA A1615 1555 1555 2.38 LINK OE1 GLU A 354 CA CA A1615 1555 1555 2.35 LINK OE2 GLU A 354 CA CA A1615 1555 1555 2.44 LINK CA CA A1615 O HOH A2036 1555 1555 2.30 CISPEP 1 PRO A 608 HIS A 609 0 4.75 SITE 1 AC1 6 GLY A 456 GLY A 458 LYS A 459 THR A 460 SITE 2 AC1 6 GLY A 461 HOH A2057 SITE 1 AC2 4 ARG A 240 ARG A 241 HIS A 508 ARG A 533 SITE 1 AC3 6 LYS A 375 ARG A 464 LYS A 477 PHE A 479 SITE 2 AC3 6 LYS A 480 THR A 481 SITE 1 AC4 4 ILE A 401 LYS A 448 ARG A 502 HOH A2069 SITE 1 AC5 3 PHE A 277 LEU A 280 HIS A 281 SITE 1 AC6 6 ASP A 223 ASP A 225 ASP A 227 LEU A 229 SITE 2 AC6 6 ASN A 231 GLU A 234 SITE 1 AC7 6 ASP A 343 ASP A 345 ASP A 347 ALA A 349 SITE 2 AC7 6 GLU A 354 HOH A2036 CRYST1 82.240 82.240 156.441 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012160 0.007020 0.000000 0.00000 SCALE2 0.000000 0.014041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006392 0.00000