HEADER HYDROLASE 12-AUG-13 4C1E TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH D-CAPTOPRIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE CLASS B VIM-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 27-266; COMPND 5 SYNONYM: CLASS B BETA-LACTAMASE, METALLO BETA LACTAMASE VIM-2, COMPND 6 METALLO BETA-LACTAMASE, METALLO-BETA-LACTAMASE, METALLO-BETA- COMPND 7 LACTAMASE VIM-2, METTALO-BETA-LACTAMASE VIM-2, VIM-2, VIM-2 PROTEIN, COMPND 8 VIM-2 TYPE METALLO-BETA-LACTAMASE; COMPND 9 EC: 3.5.2.6; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: OPINF VECTOR BASED ON PTRIEX VECTOR; SOURCE 9 OTHER_DETAILS: PLASMID DERIVED NON-GENOMIC. KEYWDS HYDROLASE, MBL. METALLO-BETA-LACTAMASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR D.ZOLLMAN,J.BREM,M.A.MCDONOUGH,S.S.VAN BERKEL,C.J.SCHOFIELD REVDAT 6 20-DEC-23 4C1E 1 REMARK LINK REVDAT 5 21-FEB-18 4C1E 1 AUTHOR JRNL REVDAT 4 13-JAN-16 4C1E 1 JRNL REVDAT 3 25-NOV-15 4C1E 1 JRNL REVDAT 2 17-SEP-14 4C1E 1 TITLE REMARK MASTER REVDAT 1 27-AUG-14 4C1E 0 JRNL AUTH J.BREM,S.S.VAN BERKEL,D.ZOLLMAN,S.Y.LEE,O.GILEADI, JRNL AUTH 2 P.J.MCHUGH,T.R.WALSH,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE INHIBITION BY JRNL TITL 2 CAPTOPRIL STEREOISOMERS. JRNL REF ANTIMICROB. AGENTS V. 60 142 2015 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 26482303 JRNL DOI 10.1128/AAC.01335-15 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 78862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2176 - 3.2014 1.00 6633 145 0.1346 0.1498 REMARK 3 2 3.2014 - 2.5414 1.00 6555 132 0.1367 0.1625 REMARK 3 3 2.5414 - 2.2203 1.00 6515 144 0.1241 0.1747 REMARK 3 4 2.2203 - 2.0173 1.00 6534 138 0.1109 0.1519 REMARK 3 5 2.0173 - 1.8728 1.00 6505 146 0.1183 0.1694 REMARK 3 6 1.8728 - 1.7624 0.98 6350 133 0.1197 0.1330 REMARK 3 7 1.7624 - 1.6741 0.98 6382 139 0.1209 0.2038 REMARK 3 8 1.6741 - 1.6012 0.99 6470 133 0.1335 0.2005 REMARK 3 9 1.6012 - 1.5396 0.99 6434 139 0.1375 0.1757 REMARK 3 10 1.5396 - 1.4865 0.99 6419 130 0.1528 0.2451 REMARK 3 11 1.4865 - 1.4400 0.97 6303 142 0.1683 0.2023 REMARK 3 12 1.4400 - 1.3988 0.94 6114 127 0.1862 0.2276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 3834 REMARK 3 ANGLE : 1.420 5287 REMARK 3 CHIRALITY : 0.083 591 REMARK 3 PLANARITY : 0.008 701 REMARK 3 DIHEDRAL : 13.130 1357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CONFORMATION OF RAMACHANDRAN OUTLIERS REMARK 3 84 ASP, 87 TRP AND 178 ALA VALIDATED BY CLEAR ELECTRON DENSITY. REMARK 4 REMARK 4 4C1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KO3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM FORMATE, 20 % W/V REMARK 280 PEG3350, 1 MM TCEP. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.96050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.51700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.96050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.51700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 VAL A 27 REMARK 465 ASP A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 VAL A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 465 GLY B 25 REMARK 465 PRO B 26 REMARK 465 VAL B 27 REMARK 465 ASP B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 GLY B 31 REMARK 465 VAL B 264 REMARK 465 VAL B 265 REMARK 465 GLU B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 37 OG REMARK 470 SER A 263 CA C O CB OG REMARK 470 LYS B 90 CD CE NZ REMARK 470 SER B 263 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 147.64 74.64 REMARK 500 TRP A 87 67.88 70.79 REMARK 500 ALA A 178 -103.63 -151.84 REMARK 500 ASP B 84 147.91 78.61 REMARK 500 TRP B 87 69.46 69.32 REMARK 500 ALA B 178 -105.05 -151.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ((S)-3-MERCAPTO-2-METHYLPROPANOYL)-D-PROLINE (MCO): REMARK 600 D-CAPTOPRIL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 101.3 REMARK 620 3 HIS A 179 NE2 103.0 107.1 REMARK 620 4 MCO A 350 S 130.1 113.5 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 CYS A 198 SG 109.5 REMARK 620 3 HIS A 240 NE2 91.5 101.7 REMARK 620 4 MCO A 350 S 110.7 117.5 122.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS A 251 ND1 106.7 REMARK 620 3 FMT A 400 O1 107.4 112.2 REMARK 620 4 FMT A 401 O2 126.4 104.2 99.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 300 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 171 OE1 REMARK 620 2 GLU A 171 OE2 52.1 REMARK 620 3 HIS A 229 NE2 102.6 136.2 REMARK 620 4 HOH A2188 O 116.7 76.5 89.6 REMARK 620 5 HOH A2189 O 83.7 91.2 124.3 137.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 114 NE2 REMARK 620 2 HIS B 116 ND1 97.0 REMARK 620 3 HIS B 179 NE2 102.9 108.6 REMARK 620 4 MCO B 350 S 132.0 114.6 100.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 CYS B 198 SG 110.5 REMARK 620 3 HIS B 240 NE2 91.1 102.1 REMARK 620 4 MCO B 350 S 109.3 119.3 121.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 153 NE2 REMARK 620 2 FMT B 400 O2 131.3 REMARK 620 3 FMT B 401 O2 106.4 99.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 300 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 171 OE1 REMARK 620 2 GLU B 171 OE2 54.9 REMARK 620 3 HIS B 229 NE2 103.4 125.1 REMARK 620 4 HOH B2154 O 83.5 102.5 126.5 REMARK 620 5 HOH B2155 O 122.7 73.7 85.4 135.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCO A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCO B 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BZ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 REMARK 900 RELATED ID: 4C09 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BCII WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BCII WITH D- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE IMP-1 WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE IMP-1 WITH D- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BETA LACTAMASE IN COMPLEX WITH AN INHIBITOR DBREF 4C1E A 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 DBREF 4C1E B 27 266 UNP Q9K2N0 Q9K2N0_PSEAI 27 266 SEQADV 4C1E GLY A 25 UNP Q9K2N0 EXPRESSION TAG SEQADV 4C1E PRO A 26 UNP Q9K2N0 EXPRESSION TAG SEQADV 4C1E GLY B 25 UNP Q9K2N0 EXPRESSION TAG SEQADV 4C1E PRO B 26 UNP Q9K2N0 EXPRESSION TAG SEQRES 1 A 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 A 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 A 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 A 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 A 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 A 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 A 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 A 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 A 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 A 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 A 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 A 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 A 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 A 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 A 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 A 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 A 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 A 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 A 242 HIS THR ASN ARG SER VAL VAL GLU SEQRES 1 B 242 GLY PRO VAL ASP SER SER GLY GLU TYR PRO THR VAL SER SEQRES 2 B 242 GLU ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA SEQRES 3 B 242 ASP GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP SEQRES 4 B 242 GLY ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP SEQRES 5 B 242 GLY ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA SEQRES 6 B 242 LYS ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN SEQRES 7 B 242 ILE GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE SEQRES 8 B 242 HIS ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA SEQRES 9 B 242 ALA GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG SEQRES 10 B 242 LEU ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER SEQRES 11 B 242 LEU GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE SEQRES 12 B 242 GLY PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER SEQRES 13 B 242 THR ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL SEQRES 14 B 242 LEU TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SEQRES 15 B 242 SER ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP SEQRES 16 B 242 PRO THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU SEQRES 17 B 242 ALA GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY SEQRES 18 B 242 LEU ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA SEQRES 19 B 242 HIS THR ASN ARG SER VAL VAL GLU HET NA A 300 1 HET MCO A 350 14 HET FMT A 400 3 HET FMT A 401 3 HET FMT A 403 3 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET NA B 300 1 HET MCO B 350 14 HET FMT B 400 3 HET FMT B 401 3 HET ZN B 501 1 HET ZN B 502 1 HET ZN B 503 1 HETNAM NA SODIUM ION HETNAM MCO 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2- HETNAM 2 MCO CARBOXYLIC ACID HETNAM FMT FORMIC ACID HETNAM ZN ZINC ION FORMUL 3 NA 2(NA 1+) FORMUL 4 MCO 2(C9 H15 N O3 S) FORMUL 5 FMT 5(C H2 O2) FORMUL 8 ZN 6(ZN 2+) FORMUL 18 HOH *534(H2 O) HELIX 1 1 THR A 35 ILE A 39 5 5 HELIX 2 2 GLY A 88 ILE A 103 1 16 HELIX 3 3 HIS A 116 GLY A 121 1 6 HELIX 4 4 GLY A 122 ALA A 129 1 8 HELIX 5 5 SER A 136 GLY A 147 1 12 HELIX 6 6 CYS A 198 ILE A 200 5 3 HELIX 7 7 GLU A 218 TYR A 230 1 13 HELIX 8 8 LEU A 246 ASN A 261 1 16 HELIX 9 9 THR B 35 ILE B 39 5 5 HELIX 10 10 GLY B 88 ILE B 103 1 16 HELIX 11 11 HIS B 116 GLY B 121 1 6 HELIX 12 12 GLY B 122 ALA B 129 1 8 HELIX 13 13 SER B 136 GLY B 147 1 12 HELIX 14 14 CYS B 198 ILE B 200 5 3 HELIX 15 15 GLU B 218 TYR B 230 1 13 HELIX 16 16 LEU B 246 ASN B 261 1 16 SHEET 1 AA 7 ARG A 45 ALA A 50 0 SHEET 2 AA 7 VAL A 53 PHE A 62 -1 O VAL A 53 N ILE A 49 SHEET 3 AA 7 ALA A 65 ASP A 76 -1 O ALA A 65 N PHE A 62 SHEET 4 AA 7 GLU A 79 ILE A 83 -1 O GLU A 79 N ASP A 76 SHEET 5 AA 7 VAL A 107 VAL A 111 1 N THR A 108 O LEU A 80 SHEET 6 AA 7 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 7 AA 7 HIS A 153 SER A 154 1 O HIS A 153 N ALA A 135 SHEET 1 AB 5 ASP A 163 PHE A 167 0 SHEET 2 AB 5 VAL A 170 TYR A 174 -1 O VAL A 170 N PHE A 167 SHEET 3 AB 5 VAL A 185 VAL A 188 -1 O VAL A 185 N PHE A 173 SHEET 4 AB 5 VAL A 193 GLY A 197 -1 O VAL A 193 N VAL A 188 SHEET 5 AB 5 PHE A 235 PRO A 238 1 O PHE A 235 N LEU A 194 SHEET 1 BA 7 ARG B 45 ALA B 50 0 SHEET 2 BA 7 VAL B 53 PHE B 62 -1 O VAL B 53 N ILE B 49 SHEET 3 BA 7 ALA B 65 ASP B 76 -1 O ALA B 65 N PHE B 62 SHEET 4 BA 7 GLU B 79 ILE B 83 -1 O GLU B 79 N ASP B 76 SHEET 5 BA 7 VAL B 107 VAL B 111 1 N THR B 108 O LEU B 80 SHEET 6 BA 7 ALA B 132 ALA B 135 1 O ALA B 132 N ALA B 110 SHEET 7 BA 7 HIS B 153 SER B 154 1 O HIS B 153 N ALA B 135 SHEET 1 BB 5 ASP B 163 PHE B 167 0 SHEET 2 BB 5 VAL B 170 TYR B 174 -1 O VAL B 170 N PHE B 167 SHEET 3 BB 5 VAL B 185 VAL B 188 -1 O VAL B 185 N PHE B 173 SHEET 4 BB 5 VAL B 193 GLY B 197 -1 O VAL B 193 N VAL B 188 SHEET 5 BB 5 PHE B 235 PRO B 238 1 O PHE B 235 N LEU B 194 LINK NE2 HIS A 114 ZN ZN A 501 1555 1555 2.05 LINK ND1 HIS A 116 ZN ZN A 501 1555 1555 2.02 LINK OD2 ASP A 118 ZN ZN A 502 1555 1555 1.96 LINK NE2 HIS A 153 ZN ZN A 503 1555 1555 2.05 LINK OE1 GLU A 171 NA NA A 300 1555 1555 2.01 LINK OE2 GLU A 171 NA NA A 300 1555 1555 2.72 LINK NE2 HIS A 179 ZN ZN A 501 1555 1555 2.08 LINK SG CYS A 198 ZN ZN A 502 1555 1555 2.28 LINK NE2 HIS A 229 NA NA A 300 1555 1555 2.14 LINK NE2 HIS A 240 ZN ZN A 502 1555 1555 2.05 LINK ND1 HIS A 251 ZN ZN A 503 4757 1555 2.07 LINK NA NA A 300 O HOH A2188 1555 1555 2.13 LINK NA NA A 300 O HOH A2189 1555 1555 2.28 LINK S MCO A 350 ZN ZN A 501 1555 1555 2.22 LINK S MCO A 350 ZN ZN A 502 1555 1555 2.33 LINK O1 FMT A 400 ZN ZN A 503 1555 1555 1.97 LINK O2 FMT A 401 ZN ZN A 503 1555 1555 1.88 LINK NE2 HIS B 114 ZN ZN B 501 1555 1555 2.12 LINK ND1 HIS B 116 ZN ZN B 501 1555 1555 2.01 LINK OD2 ASP B 118 ZN ZN B 502 1555 1555 2.00 LINK NE2 HIS B 153 ZN ZN B 503 1555 1555 2.04 LINK OE1 GLU B 171 NA NA B 300 1555 1555 2.11 LINK OE2 GLU B 171 NA NA B 300 1555 1555 2.57 LINK NE2 HIS B 179 ZN ZN B 501 1555 1555 2.06 LINK SG CYS B 198 ZN ZN B 502 1555 1555 2.30 LINK NE2 HIS B 229 NA NA B 300 1555 1555 2.19 LINK NE2 HIS B 240 ZN ZN B 502 1555 1555 2.07 LINK NA NA B 300 O HOH B2154 1555 1555 2.11 LINK NA NA B 300 O HOH B2155 1555 1555 2.09 LINK S MCO B 350 ZN ZN B 501 1555 1555 2.29 LINK S MCO B 350 ZN ZN B 502 1555 1555 2.34 LINK O2 FMT B 400 ZN ZN B 503 1555 1555 2.14 LINK O2 FMT B 401 ZN ZN B 503 1555 1555 2.09 SITE 1 AC1 4 GLU A 171 HIS A 229 HOH A2188 HOH A2189 SITE 1 AC2 15 PHE A 62 TYR A 67 TRP A 87 HIS A 116 SITE 2 AC2 15 ASP A 118 HIS A 179 ARG A 205 GLY A 209 SITE 3 AC2 15 ASN A 210 HIS A 240 ZN A 501 ZN A 502 SITE 4 AC2 15 HOH A2217 HOH A2227 HOH A2229 SITE 1 AC3 8 ALA A 132 THR A 133 THR A 152 HIS A 153 SITE 2 AC3 8 HIS A 251 FMT A 401 ZN A 503 HOH A2138 SITE 1 AC4 8 ALA A 132 HIS A 153 HIS A 251 ASN A 254 SITE 2 AC4 8 FMT A 400 ZN A 503 HOH A2140 HOH A2219 SITE 1 AC5 6 HIS A 153 LEU A 203 HOH A2162 HOH A2165 SITE 2 AC5 6 HOH A2215 HOH A2292 SITE 1 AC6 4 HIS A 114 HIS A 116 HIS A 179 MCO A 350 SITE 1 AC7 4 ASP A 118 CYS A 198 HIS A 240 MCO A 350 SITE 1 AC8 4 HIS A 153 HIS A 251 FMT A 400 FMT A 401 SITE 1 AC9 4 GLU B 171 HIS B 229 HOH B2154 HOH B2155 SITE 1 BC1 15 PHE B 62 TYR B 67 TRP B 87 HIS B 116 SITE 2 BC1 15 ASP B 118 HIS B 179 ARG B 205 GLY B 209 SITE 3 BC1 15 ASN B 210 HIS B 240 ZN B 501 ZN B 502 SITE 4 BC1 15 HOH B2173 HOH B2181 HOH B2241 SITE 1 BC2 6 ALA B 132 HIS B 153 FMT B 401 ZN B 503 SITE 2 BC2 6 HOH B2111 HOH B2242 SITE 1 BC3 7 ALA B 132 THR B 133 THR B 152 HIS B 153 SITE 2 BC3 7 FMT B 400 ZN B 503 HOH B2110 SITE 1 BC4 4 HIS B 114 HIS B 116 HIS B 179 MCO B 350 SITE 1 BC5 4 ASP B 118 CYS B 198 HIS B 240 MCO B 350 SITE 1 BC6 3 HIS B 153 FMT B 400 FMT B 401 CRYST1 103.921 79.034 67.229 90.00 131.63 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009623 0.000000 0.008552 0.00000 SCALE2 0.000000 0.012653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019900 0.00000