HEADER HYDROLASE 12-AUG-13 4C1G TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE IMP-1 WITH D-CAPTOPRIL CAVEAT 4C1G MCO A 305 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE IMP-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLAIMP, BETA-LACTAMASE TYPE II, PENICILLINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-26B; SOURCE 10 OTHER_DETAILS: PLASMID DERIVED NON-GENOMIC. KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE EXPDTA X-RAY DIFFRACTION AUTHOR D.ZOLLMAN,J.BREM,M.A.MCDONOUGH,S.S.VAN BERKEL,C.J.SCHOFIELD REVDAT 6 20-DEC-23 4C1G 1 REMARK LINK REVDAT 5 21-FEB-18 4C1G 1 AUTHOR JRNL REVDAT 4 13-JAN-16 4C1G 1 JRNL REVDAT 3 25-NOV-15 4C1G 1 JRNL REVDAT 2 17-SEP-14 4C1G 1 TITLE REMARK REVDAT 1 27-AUG-14 4C1G 0 JRNL AUTH J.BREM,S.S.VAN BERKEL,D.ZOLLMAN,S.Y.LEE,O.GILEADI, JRNL AUTH 2 P.J.MCHUGH,T.R.WALSH,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS OF METALLO-BETA-LACTAMASE INHIBITION BY JRNL TITL 2 CAPTOPRIL STEREOISOMERS. JRNL REF ANTIMICROB. AGENTS V. 60 142 2015 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 26482303 JRNL DOI 10.1128/AAC.01335-15 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 3846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.5677 - 5.1402 1.00 3976 140 0.1934 0.1778 REMARK 3 2 5.1402 - 4.0804 1.00 3939 135 0.1408 0.1700 REMARK 3 3 4.0804 - 3.5648 1.00 3949 144 0.1459 0.1799 REMARK 3 4 3.5648 - 3.2389 1.00 3978 131 0.1455 0.2135 REMARK 3 5 3.2389 - 3.0068 1.00 3946 152 0.1446 0.1597 REMARK 3 6 3.0068 - 2.8295 1.00 3999 134 0.1422 0.1750 REMARK 3 7 2.8295 - 2.6878 1.00 3965 154 0.1416 0.1822 REMARK 3 8 2.6878 - 2.5708 1.00 3920 132 0.1275 0.1552 REMARK 3 9 2.5708 - 2.4718 1.00 3942 144 0.1256 0.1519 REMARK 3 10 2.4718 - 2.3865 1.00 3961 145 0.1247 0.1672 REMARK 3 11 2.3865 - 2.3119 1.00 3987 141 0.1186 0.1362 REMARK 3 12 2.3119 - 2.2458 1.00 4003 129 0.1178 0.1546 REMARK 3 13 2.2458 - 2.1867 1.00 3898 136 0.1187 0.1498 REMARK 3 14 2.1867 - 2.1334 1.00 4015 145 0.1165 0.1508 REMARK 3 15 2.1334 - 2.0849 1.00 3929 155 0.1271 0.1430 REMARK 3 16 2.0849 - 2.0405 1.00 3942 154 0.1329 0.1945 REMARK 3 17 2.0405 - 1.9997 1.00 3949 150 0.1279 0.1809 REMARK 3 18 1.9997 - 1.9619 1.00 3999 128 0.1278 0.1511 REMARK 3 19 1.9619 - 1.9269 1.00 3964 139 0.1297 0.1567 REMARK 3 20 1.9269 - 1.8942 1.00 3957 164 0.1398 0.1996 REMARK 3 21 1.8942 - 1.8637 1.00 3939 150 0.1501 0.1830 REMARK 3 22 1.8637 - 1.8350 1.00 3993 153 0.1544 0.1867 REMARK 3 23 1.8350 - 1.8080 1.00 3945 122 0.1676 0.2389 REMARK 3 24 1.8080 - 1.7825 1.00 4016 122 0.1801 0.2097 REMARK 3 25 1.7825 - 1.7585 1.00 3920 143 0.2008 0.2446 REMARK 3 26 1.7585 - 1.7356 1.00 3921 154 0.2187 0.2631 REMARK 3 27 1.7356 - 1.7139 1.00 3993 150 0.2331 0.3091 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3414 REMARK 3 ANGLE : 1.730 4673 REMARK 3 CHIRALITY : 0.111 526 REMARK 3 PLANARITY : 0.010 589 REMARK 3 DIHEDRAL : 13.605 1156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CHAIN B MUCH MORE DISORDERED THAN CHAIN REMARK 3 A SO INHIBITOR ONLY SEEN IN A. CONFORMATION OF RAMACHANDRAN REMARK 3 OUTLIERS 59 ASN AND 66 ASP VALIDATED BY CLEAR ELECTRON DENSITY REMARK 3 IN CHAIN A. REMARK 4 REMARK 4 4C1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 64.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DD6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M LI2SO4, 0.1 M SODIUM ACETATE, REMARK 280 PH 4.5, 23 % W/V PEG 8000, 1MM DTT. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 240 REMARK 465 PRO A 241 REMARK 465 SER A 242 REMARK 465 LYS A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 ASN A 246 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 SER B 21 REMARK 465 LYS B 239 REMARK 465 LYS B 240 REMARK 465 PRO B 241 REMARK 465 SER B 242 REMARK 465 LYS B 243 REMARK 465 PRO B 244 REMARK 465 SER B 245 REMARK 465 ASN B 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CD CE NZ REMARK 470 LYS A 145 NZ REMARK 470 LYS A 199 CD CE NZ REMARK 470 LYS A 207 CD CE NZ REMARK 470 GLU A 237 CD OE1 OE2 REMARK 470 LEU B 22 CG CD1 CD2 REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ILE B 27 CD1 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 GLU B 42 CD OE1 OE2 REMARK 470 ASN B 44 CG OD1 ND2 REMARK 470 LEU B 57 CD1 CD2 REMARK 470 VAL B 58 CG1 CG2 REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 76 CD CE NZ REMARK 470 LEU B 77 CD1 CD2 REMARK 470 VAL B 82 CG1 CG2 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 ARG B 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LEU B 107 CG CD1 CD2 REMARK 470 ARG B 110 NE CZ NH1 NH2 REMARK 470 SER B 111 OG REMARK 470 LEU B 123 CG CD1 CD2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ASP B 127 CG OD1 OD2 REMARK 470 SER B 137 OG REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 LYS B 170 CD CE NZ REMARK 470 ILE B 191 CG1 CG2 CD1 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 LEU B 200 CG CD1 CD2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 470 LYS B 225 CD CE NZ REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 -126.33 55.52 REMARK 500 ASP A 66 150.40 82.83 REMARK 500 ASN B 59 -131.14 55.40 REMARK 500 ASP B 66 166.67 82.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ((S)-3-MERCAPTO-2-METHYLPROPANOYL)-D-PROLINE (MCO): REMARK 600 D-CAPTOPRIL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 NE2 REMARK 620 2 HIS A 97 ND1 101.9 REMARK 620 3 HIS A 157 NE2 107.7 108.1 REMARK 620 4 MCO A 305 S 124.1 116.4 97.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD2 REMARK 620 2 CYS A 176 SG 116.3 REMARK 620 3 HIS A 215 NE2 89.2 111.1 REMARK 620 4 MCO A 305 S 107.1 117.8 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 95 NE2 REMARK 620 2 HIS B 97 ND1 103.6 REMARK 620 3 HIS B 157 NE2 91.1 109.0 REMARK 620 4 HOH B2005 O 119.1 108.9 122.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 99 OD2 REMARK 620 2 CYS B 176 SG 118.8 REMARK 620 3 HIS B 215 NE2 93.3 111.5 REMARK 620 4 HOH B2005 O 101.2 113.6 116.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MCO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BZ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 REMARK 900 RELATED ID: 4C09 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BCII WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE BCII WITH D- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH D- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE IMP-1 WITH L- REMARK 900 CAPTOPRIL REMARK 900 RELATED ID: 4C1H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BETA LACTAMASE IN COMPLEX WITH AN INHIBITOR DBREF 4C1G A 19 246 UNP P52699 BLAB_SERMA 19 246 DBREF 4C1G B 19 246 UNP P52699 BLAB_SERMA 19 246 SEQRES 1 A 228 ALA GLU SER LEU PRO ASP LEU LYS ILE GLU LYS LEU ASP SEQRES 2 A 228 GLU GLY VAL TYR VAL HIS THR SER PHE GLU GLU VAL ASN SEQRES 3 A 228 GLY TRP GLY VAL VAL PRO LYS HIS GLY LEU VAL VAL LEU SEQRES 4 A 228 VAL ASN ALA GLU ALA TYR LEU ILE ASP THR PRO PHE THR SEQRES 5 A 228 ALA LYS ASP THR GLU LYS LEU VAL THR TRP PHE VAL GLU SEQRES 6 A 228 ARG GLY TYR LYS ILE LYS GLY SER ILE SER SER HIS PHE SEQRES 7 A 228 HIS SER ASP SER THR GLY GLY ILE GLU TRP LEU ASN SER SEQRES 8 A 228 ARG SER ILE PRO THR TYR ALA SER GLU LEU THR ASN GLU SEQRES 9 A 228 LEU LEU LYS LYS ASP GLY LYS VAL GLN ALA THR ASN SER SEQRES 10 A 228 PHE SER GLY VAL ASN TYR TRP LEU VAL LYS ASN LYS ILE SEQRES 11 A 228 GLU VAL PHE TYR PRO GLY PRO GLY HIS THR PRO ASP ASN SEQRES 12 A 228 VAL VAL VAL TRP LEU PRO GLU ARG LYS ILE LEU PHE GLY SEQRES 13 A 228 GLY CYS PHE ILE LYS PRO TYR GLY LEU GLY ASN LEU GLY SEQRES 14 A 228 ASP ALA ASN ILE GLU ALA TRP PRO LYS SER ALA LYS LEU SEQRES 15 A 228 LEU LYS SER LYS TYR GLY LYS ALA LYS LEU VAL VAL PRO SEQRES 16 A 228 SER HIS SER GLU VAL GLY ASP ALA SER LEU LEU LYS LEU SEQRES 17 A 228 THR LEU GLU GLN ALA VAL LYS GLY LEU ASN GLU SER LYS SEQRES 18 A 228 LYS PRO SER LYS PRO SER ASN SEQRES 1 B 228 ALA GLU SER LEU PRO ASP LEU LYS ILE GLU LYS LEU ASP SEQRES 2 B 228 GLU GLY VAL TYR VAL HIS THR SER PHE GLU GLU VAL ASN SEQRES 3 B 228 GLY TRP GLY VAL VAL PRO LYS HIS GLY LEU VAL VAL LEU SEQRES 4 B 228 VAL ASN ALA GLU ALA TYR LEU ILE ASP THR PRO PHE THR SEQRES 5 B 228 ALA LYS ASP THR GLU LYS LEU VAL THR TRP PHE VAL GLU SEQRES 6 B 228 ARG GLY TYR LYS ILE LYS GLY SER ILE SER SER HIS PHE SEQRES 7 B 228 HIS SER ASP SER THR GLY GLY ILE GLU TRP LEU ASN SER SEQRES 8 B 228 ARG SER ILE PRO THR TYR ALA SER GLU LEU THR ASN GLU SEQRES 9 B 228 LEU LEU LYS LYS ASP GLY LYS VAL GLN ALA THR ASN SER SEQRES 10 B 228 PHE SER GLY VAL ASN TYR TRP LEU VAL LYS ASN LYS ILE SEQRES 11 B 228 GLU VAL PHE TYR PRO GLY PRO GLY HIS THR PRO ASP ASN SEQRES 12 B 228 VAL VAL VAL TRP LEU PRO GLU ARG LYS ILE LEU PHE GLY SEQRES 13 B 228 GLY CYS PHE ILE LYS PRO TYR GLY LEU GLY ASN LEU GLY SEQRES 14 B 228 ASP ALA ASN ILE GLU ALA TRP PRO LYS SER ALA LYS LEU SEQRES 15 B 228 LEU LYS SER LYS TYR GLY LYS ALA LYS LEU VAL VAL PRO SEQRES 16 B 228 SER HIS SER GLU VAL GLY ASP ALA SER LEU LEU LYS LEU SEQRES 17 B 228 THR LEU GLU GLN ALA VAL LYS GLY LEU ASN GLU SER LYS SEQRES 18 B 228 LYS PRO SER LYS PRO SER ASN HET ZN A 300 1 HET ZN A 301 1 HET MCO A 305 14 HET SO4 A 310 5 HET SO4 A 311 5 HET ZN B 300 1 HET ZN B 301 1 HETNAM ZN ZINC ION HETNAM MCO 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2- HETNAM 2 MCO CARBOXYLIC ACID HETNAM SO4 SULFATE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 MCO C9 H15 N O3 S FORMUL 6 SO4 2(O4 S 2-) FORMUL 10 HOH *215(H2 O) HELIX 1 1 THR A 70 ARG A 84 1 15 HELIX 2 2 HIS A 97 GLY A 102 1 6 HELIX 3 3 GLY A 103 ARG A 110 1 8 HELIX 4 4 GLU A 118 ASP A 127 1 10 HELIX 5 5 CYS A 176 ILE A 178 5 3 HELIX 6 6 ALA A 193 GLY A 206 1 14 HELIX 7 7 ALA A 221 LYS A 239 1 19 HELIX 8 8 THR B 70 GLU B 83 1 14 HELIX 9 9 HIS B 97 GLY B 102 1 6 HELIX 10 10 GLY B 103 SER B 109 1 7 HELIX 11 11 GLU B 118 ASP B 127 1 10 HELIX 12 12 CYS B 176 ILE B 178 5 3 HELIX 13 13 ALA B 193 GLY B 206 1 14 HELIX 14 14 ALA B 221 SER B 238 1 18 SHEET 1 AA 7 LYS A 26 ASP A 31 0 SHEET 2 AA 7 VAL A 34 VAL A 43 -1 O VAL A 34 N LEU A 30 SHEET 3 AA 7 GLY A 47 VAL A 58 -1 O GLY A 47 N VAL A 43 SHEET 4 AA 7 GLU A 61 ILE A 65 -1 O GLU A 61 N VAL A 58 SHEET 5 AA 7 LYS A 87 ILE A 92 1 O LYS A 87 N ALA A 62 SHEET 6 AA 7 THR A 114 SER A 117 1 N TYR A 115 O SER A 91 SHEET 7 AA 7 ASN A 134 PHE A 136 1 O ASN A 134 N ALA A 116 SHEET 1 AB 5 ASN A 140 VAL A 144 0 SHEET 2 AB 5 ILE A 148 PHE A 151 -1 O ILE A 148 N VAL A 144 SHEET 3 AB 5 VAL A 163 LEU A 166 -1 O VAL A 163 N PHE A 151 SHEET 4 AB 5 ILE A 171 GLY A 175 -1 O ILE A 171 N LEU A 166 SHEET 5 AB 5 LEU A 210 PRO A 213 1 O LEU A 210 N LEU A 172 SHEET 1 BA 7 LYS B 26 ASP B 31 0 SHEET 2 BA 7 VAL B 34 VAL B 43 -1 O VAL B 34 N LEU B 30 SHEET 3 BA 7 GLY B 47 VAL B 58 -1 O GLY B 47 N VAL B 43 SHEET 4 BA 7 GLU B 61 ILE B 65 -1 O GLU B 61 N VAL B 58 SHEET 5 BA 7 LYS B 87 ILE B 92 1 O LYS B 87 N ALA B 62 SHEET 6 BA 7 THR B 114 SER B 117 1 N TYR B 115 O SER B 91 SHEET 7 BA 7 ASN B 134 PHE B 136 1 O ASN B 134 N ALA B 116 SHEET 1 BB 5 ASN B 140 VAL B 144 0 SHEET 2 BB 5 ILE B 148 PHE B 151 -1 O ILE B 148 N VAL B 144 SHEET 3 BB 5 VAL B 163 LEU B 166 -1 O VAL B 163 N PHE B 151 SHEET 4 BB 5 ILE B 171 GLY B 175 -1 O ILE B 171 N LEU B 166 SHEET 5 BB 5 LEU B 210 PRO B 213 1 O LEU B 210 N LEU B 172 LINK NE2 HIS A 95 ZN ZN A 300 1555 1555 2.10 LINK ND1 HIS A 97 ZN ZN A 300 1555 1555 1.99 LINK OD2 ASP A 99 ZN ZN A 301 1555 1555 2.29 LINK NE2 HIS A 157 ZN ZN A 300 1555 1555 2.01 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.29 LINK NE2 HIS A 215 ZN ZN A 301 1555 1555 2.02 LINK ZN ZN A 300 S MCO A 305 1555 1555 2.36 LINK ZN ZN A 301 S MCO A 305 1555 1555 2.31 LINK NE2 HIS B 95 ZN ZN B 301 1555 1555 2.15 LINK ND1 HIS B 97 ZN ZN B 301 1555 1555 2.09 LINK OD2 ASP B 99 ZN ZN B 300 1555 1555 2.02 LINK NE2 HIS B 157 ZN ZN B 301 1555 1555 2.08 LINK SG CYS B 176 ZN ZN B 300 1555 1555 2.11 LINK NE2 HIS B 215 ZN ZN B 300 1555 1555 2.08 LINK ZN ZN B 300 O HOH B2005 1555 1555 2.18 LINK ZN ZN B 301 O HOH B2005 1555 1555 2.25 SITE 1 AC1 5 HIS A 95 HIS A 97 HIS A 157 ZN A 301 SITE 2 AC1 5 MCO A 305 SITE 1 AC2 5 ASP A 99 CYS A 176 HIS A 215 ZN A 300 SITE 2 AC2 5 MCO A 305 SITE 1 AC3 11 TRP A 46 VAL A 49 ASP A 99 HIS A 157 SITE 2 AC3 11 LYS A 179 GLY A 184 ASN A 185 HIS A 215 SITE 3 AC3 11 ZN A 300 ZN A 301 HOH A2168 SITE 1 AC4 6 GLU A 32 VAL A 34 VAL A 56 LEU A 57 SITE 2 AC4 6 GLU A 168 ARG A 169 SITE 1 AC5 7 TRP A 80 ARG A 84 GLU A 168 ARG A 169 SITE 2 AC5 7 HOH A2199 HOH A2200 HOH A2201 SITE 1 AC6 5 ASP B 99 CYS B 176 HIS B 215 ZN B 301 SITE 2 AC6 5 HOH B2005 SITE 1 AC7 5 HIS B 95 HIS B 97 HIS B 157 ZN B 300 SITE 2 AC7 5 HOH B2005 CRYST1 50.220 54.570 194.590 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019912 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005139 0.00000