HEADER HYDROLASE 13-AUG-13 4C1S TITLE GLYCOSIDE HYDROLASE FAMILY 76 (MANNOSIDASE) BT3792 FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 76 MANNOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ENZYMATIC FRAGMENT, RESIDUES 155-525; COMPND 5 EC: 3.2.1.101; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: BT3792 GENE FRAGMENT ENCODING RESIDUES 155- 514 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT3792; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, GUT MICROBIOTA EXPDTA X-RAY DIFFRACTION AUTHOR F.CUSKIN,E.C.LOWE,Y.ZHU,M.TEMPLE,A.J.THOMPSON,A.CARTMELL,K.PIENS, AUTHOR 2 D.BRACKE,W.VERVECKEN,J.L.MUNOZ-MUNOZ,M.D.L.SUITS,A.B.BORASTON, AUTHOR 3 S.J.WILLIAMS,G.J.DAVIES,W.D.ABBOTT,E.C.MARTENS,H.J.GILBERT REVDAT 5 20-DEC-23 4C1S 1 REMARK REVDAT 4 04-MAR-15 4C1S 1 JRNL REVDAT 3 24-DEC-14 4C1S 1 JRNL REVDAT 2 26-NOV-14 4C1S 1 JRNL REVDAT 1 13-NOV-13 4C1S 0 JRNL AUTH F.CUSKIN,E.C.LOWE,M.J.TEMPLE,Y.ZHU,E.A.CAMERON,N.A.PUDLO, JRNL AUTH 2 N.T.PORTER,K.URS,A.J.THOMPSON,A.CARTMELL,A.ROGOWSKI, JRNL AUTH 3 B.S.HAMILTON,R.CHEN,T.J.TOLBERT,K.PIENS,D.BRACKE, JRNL AUTH 4 W.VERVECKEN,Z.HAKKI,G.SPECIALE,J.L.MUNOZ-MUNOZ,A.DAY, JRNL AUTH 5 M.J.PENA,R.MCLEAN,M.D.SUITS,A.B.BORASTON,T.ATHERLY, JRNL AUTH 6 C.J.ZIEMER,S.J.WILLIAMS,G.J.DAVIES,D.W.ABBOTT,E.C.MARTENS, JRNL AUTH 7 H.J.GILBERT JRNL TITL HUMAN GUT BACTEROIDETES CAN UTILIZE YEAST MANNAN THROUGH A JRNL TITL 2 SELFISH MECHANISM. JRNL REF NATURE V. 517 165 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 25567280 JRNL DOI 10.1038/NATURE13995 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3666 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.47000 REMARK 3 B22 (A**2) : -13.73000 REMARK 3 B33 (A**2) : 1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -21.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6302 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8507 ; 1.597 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 750 ; 7.162 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 327 ;37.243 ;24.006 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1019 ;15.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 847 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4909 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2998 ; 2.425 ; 2.308 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3745 ; 3.252 ; 3.457 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3304 ; 3.071 ; 2.463 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4C1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98005 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), FEATURING REMARK 200 INDIRECTLY WATER- COOLED FIRST REMARK 200 CRYSTAL AND FLAT, LONG SECOND REMARK 200 CRYSTAL REMARK 200 OPTICS : COLLIMATING MIRROR WITH TWO REMARK 200 STRIPES (SI, RH AND PT) , REMARK 200 TOROIDAL FOCUSING MIRROR (RH AND REMARK 200 PT) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MX-300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3K7X REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BT3792 AT A 20 MG PER ML BUFFERED IN REMARK 280 IN 25 MM TRIS-HCL (PH 8.0), 500 MM NACL, 2 MM DTT WITH A REMARK 280 RESERVOIR SOLUTION CONSISTING OF 5% GLYCEROL (V/V), 24% (W PER V) REMARK 280 POLYETHYLENE GLYCOL 2,000 MONOMETHYL ETHER, 0.25 M SODIUM REMARK 280 ACETATE, AND BIS-TRIS-HCL (PH 5.5) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.21000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 152 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 153 CG SD CE REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 HIS B 152 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 153 CG SD CE REMARK 470 LYS B 186 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 151 N REMARK 480 SER B 151 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2087 O HOH B 2107 1.57 REMARK 500 OE2 GLU A 512 NH1 ARG A 516 1.79 REMARK 500 CA MET B 449 O HOH B 2090 1.87 REMARK 500 NH2 ARG A 427 O HOH A 2124 1.87 REMARK 500 O HOH B 2027 O HOH B 2028 1.89 REMARK 500 NH1 ARG A 463 O ARG A 525 1.96 REMARK 500 NH1 ARG B 463 O ARG B 525 1.98 REMARK 500 SD MET B 473 O HOH B 2129 2.01 REMARK 500 SD MET A 473 O HOH A 2141 2.05 REMARK 500 O HOH B 2048 O HOH B 2051 2.06 REMARK 500 O HOH A 2075 O HOH B 2051 2.11 REMARK 500 CD ARG B 288 OD2 ASP B 292 2.13 REMARK 500 C2 EDO B 1527 O HOH B 2006 2.16 REMARK 500 CB CYS A 328 O HOH A 2072 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2028 O HOH B 2027 1565 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 151 N SER A 151 CA -0.620 REMARK 500 SER B 151 N SER B 151 CA -0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 151 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 SER A 151 N - CA - C ANGL. DEV. = 33.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 194 159.73 -45.80 REMARK 500 HIS A 304 174.27 -51.26 REMARK 500 GLN A 335 20.64 49.26 REMARK 500 SER A 479 -167.11 -119.85 REMARK 500 ASN A 486 -7.97 75.05 REMARK 500 ASP A 492 98.76 -169.98 REMARK 500 LEU B 194 155.00 -45.48 REMARK 500 TRP B 305 -70.74 -108.95 REMARK 500 GLN B 335 18.04 54.59 REMARK 500 ASN B 486 -14.50 79.38 REMARK 500 ASP B 492 96.14 -166.24 REMARK 500 ASN B 524 41.67 31.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1532 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1528 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1530 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C1R RELATED DB: PDB REMARK 900 BACTEROIDES THETAIOTAOMICRON VPI-5482 MANNOSYL-6- PHOSPHATASE BT3783 DBREF 4C1S A 155 525 UNP Q8A174 Q8A174_BACTN 155 525 DBREF 4C1S B 155 525 UNP Q8A174 Q8A174_BACTN 155 525 SEQADV 4C1S SER A 151 UNP Q8A174 EXPRESSION TAG SEQADV 4C1S HIS A 152 UNP Q8A174 EXPRESSION TAG SEQADV 4C1S MET A 153 UNP Q8A174 EXPRESSION TAG SEQADV 4C1S ALA A 154 UNP Q8A174 EXPRESSION TAG SEQADV 4C1S SER B 151 UNP Q8A174 EXPRESSION TAG SEQADV 4C1S HIS B 152 UNP Q8A174 EXPRESSION TAG SEQADV 4C1S MET B 153 UNP Q8A174 EXPRESSION TAG SEQADV 4C1S ALA B 154 UNP Q8A174 EXPRESSION TAG SEQRES 1 A 375 SER HIS MET ALA ASP ARG ALA HIS SER TYR MET THR SER SEQRES 2 A 375 VAL ILE GLY TYR TYR PHE GLY LYS SER SER ARG SER CYS SEQRES 3 A 375 TRP ARG SER ASN TYR PRO TYR ASP GLY LYS GLY TYR TRP SEQRES 4 A 375 ASP GLY ASP ALA LEU VAL TRP GLY GLN GLY GLY GLY LEU SEQRES 5 A 375 SER ALA PHE VAL ALA MET ARG ASP ALA THR LYS GLU SER SEQRES 6 A 375 GLU VAL GLU ASN LEU TYR GLY ALA MET ASP ASP MET MET SEQRES 7 A 375 PHE LYS GLY ILE GLN TYR PHE CYS GLN LEU ASP ARG GLY SEQRES 8 A 375 ILE LEU ALA TYR SER CYS TYR PRO ALA ALA GLY ASN GLU SEQRES 9 A 375 ARG PHE TYR ASP ASP ASN VAL TRP ILE GLY LEU ASP MET SEQRES 10 A 375 VAL ASP TRP TYR THR GLU THR LYS GLU MET ARG TYR LEU SEQRES 11 A 375 THR GLN ALA LYS VAL VAL TRP ARG TYR LEU ILE ASP HIS SEQRES 12 A 375 GLY TRP ASP GLU THR CYS GLY GLY GLY VAL HIS TRP ARG SEQRES 13 A 375 GLU LEU ASN GLU HIS THR THR SER LYS HIS SER CYS SER SEQRES 14 A 375 THR GLY PRO THR ALA VAL MET GLY CYS LYS MET TYR LEU SEQRES 15 A 375 ALA THR GLN GLU GLN GLU TYR LEU ASP TRP ALA ILE LYS SEQRES 16 A 375 CYS TYR ASP TYR MET LEU ASP VAL LEU GLN ASP LYS SER SEQRES 17 A 375 ASP HIS LEU PHE TYR ASP ASN VAL ARG PRO ASN LYS ASP SEQRES 18 A 375 ASP PRO ASN LEU PRO GLY ASP LEU GLU LYS ASN LYS TYR SEQRES 19 A 375 SER TYR ASN SER GLY GLN PRO LEU GLN ALA ALA CYS LEU SEQRES 20 A 375 LEU TYR LYS ILE THR GLY GLU GLN LYS TYR LEU ASP GLU SEQRES 21 A 375 ALA TYR ALA ILE ALA GLU SER CYS HIS LYS LYS TRP PHE SEQRES 22 A 375 MET PRO TYR ARG SER LYS GLU LEU ASN LEU THR PHE ASN SEQRES 23 A 375 ILE LEU ALA PRO GLY HIS ALA TRP PHE ASN THR ILE MET SEQRES 24 A 375 CYS ARG GLY PHE PHE GLU LEU TYR SER ILE ASP ASN ASP SEQRES 25 A 375 ARG LYS TYR ILE ASP ASP ILE GLU LYS SER MET ILE HIS SEQRES 26 A 375 ALA TRP SER SER SER CYS HIS GLN GLY ASN ASN LEU LEU SEQRES 27 A 375 ASN ASP ASP ASP LEU ARG GLY GLY THR THR LYS THR GLY SEQRES 28 A 375 TRP GLU ILE LEU HIS GLN GLY ALA LEU VAL GLU LEU TYR SEQRES 29 A 375 ALA ARG LEU ALA VAL LEU GLU ARG GLU ASN ARG SEQRES 1 B 375 SER HIS MET ALA ASP ARG ALA HIS SER TYR MET THR SER SEQRES 2 B 375 VAL ILE GLY TYR TYR PHE GLY LYS SER SER ARG SER CYS SEQRES 3 B 375 TRP ARG SER ASN TYR PRO TYR ASP GLY LYS GLY TYR TRP SEQRES 4 B 375 ASP GLY ASP ALA LEU VAL TRP GLY GLN GLY GLY GLY LEU SEQRES 5 B 375 SER ALA PHE VAL ALA MET ARG ASP ALA THR LYS GLU SER SEQRES 6 B 375 GLU VAL GLU ASN LEU TYR GLY ALA MET ASP ASP MET MET SEQRES 7 B 375 PHE LYS GLY ILE GLN TYR PHE CYS GLN LEU ASP ARG GLY SEQRES 8 B 375 ILE LEU ALA TYR SER CYS TYR PRO ALA ALA GLY ASN GLU SEQRES 9 B 375 ARG PHE TYR ASP ASP ASN VAL TRP ILE GLY LEU ASP MET SEQRES 10 B 375 VAL ASP TRP TYR THR GLU THR LYS GLU MET ARG TYR LEU SEQRES 11 B 375 THR GLN ALA LYS VAL VAL TRP ARG TYR LEU ILE ASP HIS SEQRES 12 B 375 GLY TRP ASP GLU THR CYS GLY GLY GLY VAL HIS TRP ARG SEQRES 13 B 375 GLU LEU ASN GLU HIS THR THR SER LYS HIS SER CYS SER SEQRES 14 B 375 THR GLY PRO THR ALA VAL MET GLY CYS LYS MET TYR LEU SEQRES 15 B 375 ALA THR GLN GLU GLN GLU TYR LEU ASP TRP ALA ILE LYS SEQRES 16 B 375 CYS TYR ASP TYR MET LEU ASP VAL LEU GLN ASP LYS SER SEQRES 17 B 375 ASP HIS LEU PHE TYR ASP ASN VAL ARG PRO ASN LYS ASP SEQRES 18 B 375 ASP PRO ASN LEU PRO GLY ASP LEU GLU LYS ASN LYS TYR SEQRES 19 B 375 SER TYR ASN SER GLY GLN PRO LEU GLN ALA ALA CYS LEU SEQRES 20 B 375 LEU TYR LYS ILE THR GLY GLU GLN LYS TYR LEU ASP GLU SEQRES 21 B 375 ALA TYR ALA ILE ALA GLU SER CYS HIS LYS LYS TRP PHE SEQRES 22 B 375 MET PRO TYR ARG SER LYS GLU LEU ASN LEU THR PHE ASN SEQRES 23 B 375 ILE LEU ALA PRO GLY HIS ALA TRP PHE ASN THR ILE MET SEQRES 24 B 375 CYS ARG GLY PHE PHE GLU LEU TYR SER ILE ASP ASN ASP SEQRES 25 B 375 ARG LYS TYR ILE ASP ASP ILE GLU LYS SER MET ILE HIS SEQRES 26 B 375 ALA TRP SER SER SER CYS HIS GLN GLY ASN ASN LEU LEU SEQRES 27 B 375 ASN ASP ASP ASP LEU ARG GLY GLY THR THR LYS THR GLY SEQRES 28 B 375 TRP GLU ILE LEU HIS GLN GLY ALA LEU VAL GLU LEU TYR SEQRES 29 B 375 ALA ARG LEU ALA VAL LEU GLU ARG GLU ASN ARG HET EDO A1526 4 HET EDO A1527 4 HET EDO A1528 4 HET EDO A1529 4 HET EDO A1530 4 HET EDO A1531 4 HET EDO A1532 4 HET EDO A1533 4 HET EDO A1534 4 HET GOL A1535 6 HET EDO B1526 4 HET EDO B1527 4 HET EDO B1528 4 HET EDO B1529 4 HET GOL B1530 6 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 13(C2 H6 O2) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 18 HOH *287(H2 O) HELIX 1 1 SER A 151 PHE A 169 1 19 HELIX 2 2 GLY A 187 GLY A 191 5 5 HELIX 3 3 LEU A 194 THR A 212 1 19 HELIX 4 4 VAL A 217 ALA A 223 1 7 HELIX 5 5 MET A 224 TYR A 234 1 11 HELIX 6 6 TYR A 257 LYS A 275 1 19 HELIX 7 7 GLU A 276 HIS A 293 1 18 HELIX 8 8 GLU A 297 GLY A 301 5 5 HELIX 9 9 SER A 317 GLN A 335 1 19 HELIX 10 10 GLU A 336 LEU A 354 1 19 HELIX 11 11 TYR A 384 GLY A 403 1 20 HELIX 12 12 GLU A 404 TRP A 422 1 19 HELIX 13 13 HIS A 442 ASN A 461 1 20 HELIX 14 14 ARG A 463 SER A 479 1 17 HELIX 15 15 ILE A 504 GLU A 523 1 20 HELIX 16 16 SER B 151 PHE B 169 1 19 HELIX 17 17 GLY B 187 GLY B 191 5 5 HELIX 18 18 LEU B 194 LYS B 213 1 20 HELIX 19 19 VAL B 217 MET B 224 1 8 HELIX 20 20 MET B 224 TYR B 234 1 11 HELIX 21 21 TYR B 257 LYS B 275 1 19 HELIX 22 22 GLU B 276 HIS B 293 1 18 HELIX 23 23 GLU B 297 GLY B 301 5 5 HELIX 24 24 SER B 317 GLN B 335 1 19 HELIX 25 25 GLN B 337 LEU B 354 1 18 HELIX 26 26 TYR B 384 GLY B 403 1 20 HELIX 27 27 GLU B 404 TRP B 422 1 19 HELIX 28 28 HIS B 442 ASN B 461 1 20 HELIX 29 29 ARG B 463 SER B 478 1 16 HELIX 30 30 ILE B 504 GLU B 523 1 20 SHEET 1 AA 2 ASN A 180 TYR A 181 0 SHEET 2 AA 2 TRP A 502 GLU A 503 -1 O TRP A 502 N TYR A 181 SHEET 1 AB 2 CYS A 236 ASP A 239 0 SHEET 2 AB 2 ILE A 242 TYR A 245 -1 O ILE A 242 N ASP A 239 SHEET 1 AC 2 ARG A 255 PHE A 256 0 SHEET 2 AC 2 ARG A 306 LEU A 308 -1 N GLU A 307 O ARG A 255 SHEET 1 AD 3 LYS A 315 HIS A 316 0 SHEET 2 AD 3 ASN A 365 PRO A 368 -1 O VAL A 366 N LYS A 315 SHEET 3 AD 3 PRO A 376 GLU A 380 -1 N GLY A 377 O ARG A 367 SHEET 1 AE 2 PHE A 423 SER A 428 0 SHEET 2 AE 2 LEU A 433 LEU A 438 -1 O LEU A 433 N SER A 428 SHEET 1 BA 2 ASN B 180 TYR B 181 0 SHEET 2 BA 2 TRP B 502 GLU B 503 -1 O TRP B 502 N TYR B 181 SHEET 1 BB 2 CYS B 236 ASP B 239 0 SHEET 2 BB 2 ILE B 242 TYR B 245 -1 O ILE B 242 N ASP B 239 SHEET 1 BC 2 ARG B 255 PHE B 256 0 SHEET 2 BC 2 ARG B 306 LEU B 308 -1 N GLU B 307 O ARG B 255 SHEET 1 BD 3 LYS B 315 HIS B 316 0 SHEET 2 BD 3 ASN B 365 PRO B 368 -1 O VAL B 366 N LYS B 315 SHEET 3 BD 3 PRO B 376 GLU B 380 -1 N GLY B 377 O ARG B 367 SHEET 1 BE 2 PHE B 423 SER B 428 0 SHEET 2 BE 2 LEU B 433 LEU B 438 -1 O LEU B 433 N SER B 428 CISPEP 1 TYR A 181 PRO A 182 0 -6.37 CISPEP 2 LEU A 308 ASN A 309 0 6.36 CISPEP 3 TYR B 181 PRO B 182 0 -6.61 CISPEP 4 LEU B 308 ASN B 309 0 -2.50 SITE 1 AC1 8 ALA A 439 GLY A 441 ALA A 443 ASN A 446 SITE 2 AC1 8 ASP A 490 ASP A 491 HOH A2127 HOH A2130 SITE 1 AC2 8 ALA B 439 GLY B 441 ALA B 443 ASN B 446 SITE 2 AC2 8 ASP B 490 ASP B 491 HOH B2112 HOH B2116 SITE 1 AC3 10 PHE A 169 SER A 175 CYS A 176 TRP A 177 SITE 2 AC3 10 GLN A 198 MET A 227 MET A 228 GLY A 231 SITE 3 AC3 10 ILE A 232 HOH A2005 SITE 1 AC4 8 CYS B 176 TRP B 177 GLN B 198 LEU B 202 SITE 2 AC4 8 MET B 228 GLY B 231 ILE B 232 HOH B2006 SITE 1 AC5 4 GLY A 197 LEU A 505 HOH A2007 HOH A2013 SITE 1 AC6 5 GLY A 300 TYR A 349 ASP A 352 VAL A 353 SITE 2 AC6 5 HOH A2082 SITE 1 AC7 4 ARG A 516 VAL A 519 LEU A 520 HOH A2133 SITE 1 AC8 5 TRP A 305 HIS A 316 CYS A 318 ASP A 364 SITE 2 AC8 5 HOH A2094 SITE 1 AC9 5 MET A 277 THR A 281 HOH A2036 HOH A2148 SITE 2 AC9 5 THR B 281 SITE 1 BC1 6 LYS B 329 GLN B 393 ARG B 451 GLU B 455 SITE 2 BC1 6 ARG B 516 HOH B2040 SITE 1 BC2 1 LYS A 421 SITE 1 BC3 6 ASP A 269 LYS A 329 GLN A 393 ARG A 451 SITE 2 BC3 6 GLU A 455 ARG A 516 SITE 1 BC4 6 TRP B 305 HIS B 316 CYS B 318 ASP B 364 SITE 2 BC4 6 HOH B2058 HOH B2080 SITE 1 BC5 4 PHE A 256 ASP A 258 ASP A 259 TRP A 305 SITE 1 BC6 4 ASP B 258 ASP B 259 TRP B 305 HOH B2011 CRYST1 100.100 44.420 103.050 90.00 101.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009990 0.000000 0.002020 0.00000 SCALE2 0.000000 0.022512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009900 0.00000