HEADER TOXIN 16-AUG-13 4C26 TITLE SOLUTION NMR STRUCTURE OF THE HICA TOXIN FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HICA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 272560; SOURCE 4 STRAIN: K96243; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET26-B KEYWDS TOXIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.BUTT,V.A.HIGMAN,C.WILLIAMS,M.P.CRUMP,C.HEMSLEY,N.HARMER,R.W.TITBALL REVDAT 3 15-MAY-24 4C26 1 REMARK REVDAT 2 04-MAY-16 4C26 1 ATOM TER MASTER REVDAT 1 23-APR-14 4C26 0 JRNL AUTH A.BUTT,V.A.HIGMAN,C.WILLIAMS,M.P.CRUMP,C.M.HEMSLEY,N.HARMER, JRNL AUTH 2 R.W.TITBALL JRNL TITL THE HICA TOXIN FROM BURKHOLDERIA PSEUDOMALLEI HAS A ROLE IN JRNL TITL 2 PERSISTER CELL FORMATION. JRNL REF BIOCHEM.J. V. 459 333 2014 JRNL REFN ISSN 0264-6021 JRNL PMID 24502667 JRNL DOI 10.1042/BJ20140073 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : RIEPING W., HABECK M., BARDIAUX B., BERNARD A., REMARK 3 MALLIAVIN T.E., NILGES M. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 4C26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290057844. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0; 293.0 REMARK 210 PH : 7.4; 7.4; 7.4 REMARK 210 IONIC STRENGTH : 170; 170; 170 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O; 90% H2O/10% REMARK 210 D2O; 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N_NOESY; 15N_TOCSY; HNHA; REMARK 210 HSQC; 13C_HSQC; 13C_NOESY; AROM_ REMARK 210 NOESY; HCCH_TOCSY; HNCA; HNCO; REMARK 210 2D_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3, CCPNMR ANALYSIS 2.2, REMARK 210 DANGLE REMARK 210 METHOD USED : TORSION-ANGLE DYNAMICS SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A -5 -169.33 -113.85 REMARK 500 1 LYS A 31 -42.98 -177.67 REMARK 500 1 LYS A 43 144.69 -172.93 REMARK 500 2 PRO A 30 56.31 -68.83 REMARK 500 2 LYS A 31 -26.93 179.97 REMARK 500 2 LYS A 43 178.89 177.72 REMARK 500 3 MET A 1 70.26 52.25 REMARK 500 3 SER A 3 -60.31 -98.59 REMARK 500 3 SER A 23 -55.05 -167.92 REMARK 500 3 LYS A 31 -41.00 -161.22 REMARK 500 3 PRO A 41 110.36 -28.95 REMARK 500 4 SER A -2 41.54 -92.33 REMARK 500 4 MET A 1 49.93 -87.29 REMARK 500 4 ASN A 2 89.18 -158.60 REMARK 500 4 SER A 4 49.50 -152.52 REMARK 500 4 PRO A 33 84.69 -68.24 REMARK 500 4 PRO A 41 105.84 -41.80 REMARK 500 4 ASP A 44 109.92 -55.45 REMARK 500 4 PRO A 46 109.72 -50.73 REMARK 500 5 PRO A 30 58.09 -67.27 REMARK 500 5 LYS A 31 -28.03 -176.20 REMARK 500 5 LYS A 43 146.11 179.87 REMARK 500 6 SER A 3 -72.87 70.03 REMARK 500 6 SER A 4 41.42 -83.32 REMARK 500 6 PRO A 30 61.42 -67.98 REMARK 500 6 LYS A 31 -44.55 -175.36 REMARK 500 6 LYS A 42 95.06 26.02 REMARK 500 6 LYS A 43 148.37 178.24 REMARK 500 6 ASP A 44 99.80 -60.58 REMARK 500 7 GLU A -1 -84.20 -129.10 REMARK 500 7 SER A 4 -45.31 -160.97 REMARK 500 7 PRO A 30 36.53 -67.61 REMARK 500 7 LYS A 31 -38.90 -140.77 REMARK 500 7 PRO A 41 99.39 -20.67 REMARK 500 7 LYS A 42 -164.72 -111.72 REMARK 500 8 SER A 4 12.86 -155.56 REMARK 500 8 LYS A 31 -47.85 -166.58 REMARK 500 8 PRO A 41 98.97 -35.69 REMARK 500 8 LYS A 42 176.04 179.33 REMARK 500 8 LEU A 45 138.35 -39.93 REMARK 500 9 SER A -2 82.36 63.44 REMARK 500 9 GLU A -1 79.44 66.73 REMARK 500 9 MET A 1 89.48 64.96 REMARK 500 9 PRO A 30 68.28 -67.12 REMARK 500 9 LYS A 31 -25.26 177.41 REMARK 500 9 PRO A 33 -147.26 -59.41 REMARK 500 9 HIS A 40 89.58 -155.24 REMARK 500 9 LYS A 42 -170.54 -179.95 REMARK 500 10 SER A -2 34.29 -146.45 REMARK 500 10 LEU A 0 -92.68 -123.28 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19464 RELATED DB: BMRB DBREF 4C26 A 1 59 UNP Q63NA6 Q63NA6_BURPS 1 59 SEQADV 4C26 ASP A -6 UNP Q63NA6 EXPRESSION TAG SEQADV 4C26 ARG A -5 UNP Q63NA6 EXPRESSION TAG SEQADV 4C26 THR A -4 UNP Q63NA6 EXPRESSION TAG SEQADV 4C26 GLY A -3 UNP Q63NA6 EXPRESSION TAG SEQADV 4C26 SER A -2 UNP Q63NA6 EXPRESSION TAG SEQADV 4C26 GLU A -1 UNP Q63NA6 EXPRESSION TAG SEQADV 4C26 LEU A 0 UNP Q63NA6 EXPRESSION TAG SEQADV 4C26 ALA A 24 UNP Q63NA6 HIS 24 ENGINEERED MUTATION SEQRES 1 A 66 ASP ARG THR GLY SER GLU LEU MET ASN SER SER LYS LEU SEQRES 2 A 66 ILE ARG MET LEU GLU GLU ASP GLY TRP ARG LEU VAL ARG SEQRES 3 A 66 VAL THR GLY SER ALA HIS HIS PHE LYS HIS PRO LYS LYS SEQRES 4 A 66 PRO GLY LEU VAL THR VAL PRO HIS PRO LYS LYS ASP LEU SEQRES 5 A 66 PRO ILE GLY THR VAL LYS SER ILE GLN LYS SER ALA GLY SEQRES 6 A 66 LEU HELIX 1 1 LYS A 5 ASP A 13 1 9 HELIX 2 2 THR A 49 LEU A 59 1 11 SHEET 1 AA 3 ARG A 16 ARG A 19 0 SHEET 2 AA 3 ALA A 24 LYS A 28 -1 O HIS A 26 N VAL A 18 SHEET 3 AA 3 LEU A 35 PRO A 39 -1 O VAL A 36 N PHE A 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1