HEADER TRANSFERASE/INHIBITOR 21-AUG-13 4C37 TITLE PKA-S6K1 CHIMERA WITH COMPOUND 21A (CCT196539) BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: PKA-S6K1 CHIMERA; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 11 CHAIN: I; COMPND 12 FRAGMENT: RESIDUES 5-24; COMPND 13 SYNONYM: PKI-ALPHA; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 11 ORGANISM_COMMON: BOVINE; SOURCE 12 ORGANISM_TAXID: 9913 KEYWDS TRANSFERASE-INHIBITOR COMPLEX, CHIMERA, S6K1 EXPDTA X-RAY DIFFRACTION AUTHOR S.COUTY,I.M.WESTWOOD,A.KALUSA,C.CANO,J.TRAVERS,K.BOXALL,C.L.CHOW, AUTHOR 2 S.BURNS,J.SCHMITT,L.PICKARD,C.BARILLARI,P.C.MCANDREW,P.A.CLARKE, AUTHOR 3 S.LINARDOPOULOS,R.J.GRIFFIN,G.W.AHERNE,F.I.RAYNAUD,P.WORKMAN, AUTHOR 4 K.JONES,R.L.M.VAN MONTFORT REVDAT 5 09-OCT-24 4C37 1 REMARK REVDAT 4 20-DEC-23 4C37 1 REMARK REVDAT 3 09-OCT-19 4C37 1 JRNL LINK REVDAT 2 20-NOV-13 4C37 1 JRNL REVDAT 1 09-OCT-13 4C37 0 JRNL AUTH S.COUTY,I.M.WESTWOOD,A.KALUSA,C.CANO,J.TRAVERS,K.BOXALL, JRNL AUTH 2 C.L.CHOW,S.BURNS,J.SCHMITT,L.PICKARD,C.BARILLARI, JRNL AUTH 3 P.C.MCANDREW,P.A.CLARKE,S.LINARDOPOULOS,R.J.GRIFFIN, JRNL AUTH 4 G.W.AHERNE,F.I.RAYNAUD,P.WORKMAN,K.JONES,R.L.VAN MONTFORT JRNL TITL THE DISCOVERY OF POTENT RIBOSOMAL S6 KINASE INHIBITORS BY JRNL TITL 2 HIGH-THROUGHPUT SCREENING AND STRUCTURE-GUIDED DRUG DESIGN. JRNL REF ONCOTARGET V. 4 1647 2013 JRNL REFN ESSN 1949-2553 JRNL PMID 24072592 JRNL DOI 10.18632/ONCOTARGET.1255 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 48611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2462 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3556 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2154 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3376 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE : 0.2224 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.06 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 180 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 556 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.65080 REMARK 3 B22 (A**2) : -0.26880 REMARK 3 B33 (A**2) : 1.91960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.191 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.093 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.087 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.085 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.082 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3082 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4191 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1051 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 75 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 470 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3082 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 389 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4217 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.16 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|14 - A|34 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.3369 -1.2712 -18.4609 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.2225 REMARK 3 T33: 0.1300 T12: -0.1088 REMARK 3 T13: 0.1146 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.9631 L22: 4.4096 REMARK 3 L33: 2.5802 L12: 0.3837 REMARK 3 L13: -0.8758 L23: 1.8377 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.0283 S13: 0.2415 REMARK 3 S21: -0.5001 S22: 0.2140 S23: -0.4427 REMARK 3 S31: -0.4985 S32: 0.6471 S33: -0.2962 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|35 - A|82 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.4989 -20.5671 -0.0455 REMARK 3 T TENSOR REMARK 3 T11: 0.0257 T22: 0.0916 REMARK 3 T33: 0.0714 T12: 0.0220 REMARK 3 T13: 0.0024 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 1.8289 L22: 0.9666 REMARK 3 L33: 1.0211 L12: -0.8124 REMARK 3 L13: 0.6389 L23: -0.0766 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: -0.1743 S13: -0.1650 REMARK 3 S21: 0.0830 S22: 0.0957 S23: -0.0486 REMARK 3 S31: 0.2255 S32: 0.0098 S33: -0.0525 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|83 - A|179 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.0944 -3.8358 -1.5047 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0693 REMARK 3 T33: 0.0385 T12: -0.0136 REMARK 3 T13: 0.0068 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.5360 L22: 0.8224 REMARK 3 L33: 1.4406 L12: -0.1210 REMARK 3 L13: -0.0222 L23: 0.4819 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0456 S13: 0.0228 REMARK 3 S21: 0.0172 S22: 0.0717 S23: -0.1430 REMARK 3 S31: -0.1406 S32: 0.1667 S33: -0.0649 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|180 - A|254 } REMARK 3 ORIGIN FOR THE GROUP (A): 18.1497 3.9616 -4.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.0994 T22: 0.0670 REMARK 3 T33: 0.0425 T12: 0.0208 REMARK 3 T13: -0.0031 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.5432 L22: 0.6891 REMARK 3 L33: 1.0275 L12: -0.0278 REMARK 3 L13: -0.0698 L23: 0.6102 REMARK 3 S TENSOR REMARK 3 S11: 0.0313 S12: 0.0177 S13: 0.0910 REMARK 3 S21: -0.0882 S22: -0.0576 S23: 0.0035 REMARK 3 S31: -0.3141 S32: -0.0639 S33: 0.0264 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|255 - A|316 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.8702 15.6224 -1.5385 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.0276 REMARK 3 T33: 0.1133 T12: -0.0685 REMARK 3 T13: 0.0401 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.7425 L22: 1.8984 REMARK 3 L33: 2.2021 L12: -0.1413 REMARK 3 L13: 0.0601 L23: 0.5383 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0415 S13: 0.3724 REMARK 3 S21: -0.1504 S22: 0.0435 S23: -0.1169 REMARK 3 S31: -0.7567 S32: 0.1310 S33: -0.0454 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|317 - A|335 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.3500 -13.5224 12.8919 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1799 REMARK 3 T33: 0.0470 T12: 0.1026 REMARK 3 T13: 0.0386 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.4098 L22: 4.8872 REMARK 3 L33: 6.3276 L12: 0.9911 REMARK 3 L13: 2.6061 L23: 2.8952 REMARK 3 S TENSOR REMARK 3 S11: -0.1688 S12: -0.1523 S13: -0.2659 REMARK 3 S21: 0.4354 S22: 0.1869 S23: -0.0580 REMARK 3 S31: -0.0911 S32: -0.1850 S33: -0.0181 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|336 - A|350 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.7183 -27.4000 -10.5646 REMARK 3 T TENSOR REMARK 3 T11: 0.1312 T22: 0.0325 REMARK 3 T33: 0.1474 T12: -0.0084 REMARK 3 T13: 0.0061 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.9854 L22: 3.5027 REMARK 3 L33: 2.1912 L12: 0.1979 REMARK 3 L13: 0.9473 L23: -0.3634 REMARK 3 S TENSOR REMARK 3 S11: 0.1832 S12: -0.0290 S13: -0.5111 REMARK 3 S21: -0.0457 S22: -0.1090 S23: 0.3103 REMARK 3 S31: 0.5433 S32: -0.1846 S33: -0.0743 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { I|5 - I|17 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.0597 5.1935 14.3317 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1291 REMARK 3 T33: 0.0511 T12: 0.0288 REMARK 3 T13: -0.0059 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 1.0938 REMARK 3 L33: 4.8144 L12: -0.1563 REMARK 3 L13: -0.8502 L23: 3.3480 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0160 S13: -0.0505 REMARK 3 S21: -0.0849 S22: -0.0803 S23: 0.0019 REMARK 3 S31: -0.0044 S32: -0.1227 S33: 0.0638 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { I|18 - I|24 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.3705 -5.8073 1.5632 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.0948 REMARK 3 T33: 0.0899 T12: 0.0082 REMARK 3 T13: -0.0031 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.9863 L22: 3.0086 REMARK 3 L33: 2.9975 L12: -2.9304 REMARK 3 L13: -1.1797 L23: 2.0636 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.3038 S13: -0.2952 REMARK 3 S21: 0.0899 S22: 0.0164 S23: 0.1416 REMARK 3 S31: 0.2883 S32: 0.0653 S33: -0.0829 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|1351:BR A|1351:C A|1351:N A|1351:C1 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.7527 -9.7195 0.4010 REMARK 3 T TENSOR REMARK 3 T11: -0.1153 T22: 0.1802 REMARK 3 T33: -0.0647 T12: 0.0679 REMARK 3 T13: 0.0192 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0193 REMARK 3 L33: 0.2265 L12: -0.0135 REMARK 3 L13: -0.1483 L23: -0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0134 S13: -0.0064 REMARK 3 S21: 0.0293 S22: 0.0031 S23: -0.0303 REMARK 3 S31: 0.0046 S32: -0.0645 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|1351:C2 A|1351:N2 A|1351:C6 A|1351:C7 A|1351:C5 REMARK 3 A|1351:N1 A|1351:C3 A|1351:C4 A|1351:C8 A|1351:C9 A| REMARK 3 1351:N5 A|1351:N4 A|1351:O A|1351:N3 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.8991 -10.0054 3.0907 REMARK 3 T TENSOR REMARK 3 T11: -0.0505 T22: 0.0562 REMARK 3 T33: -0.0220 T12: 0.0062 REMARK 3 T13: 0.0091 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.2887 REMARK 3 L33: 0.1383 L12: 0.4248 REMARK 3 L13: 0.2880 L23: 0.0391 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.0386 S13: -0.0139 REMARK 3 S21: 0.0208 S22: 0.0137 S23: -0.0094 REMARK 3 S31: 0.0396 S32: 0.0171 S33: -0.0052 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290058141. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48722 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 37.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4C33 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 MG/ML PROTEIN IN 25MM MES-BIS-TRIS REMARK 280 PH 6.5, 75MM LICL, 0.1MM EDTA, 1MM MEGA-8, 1MM DTT AND 1MM PKI REMARK 280 PEPTIDE MIXED 1:1 WITH 8-16% AQUEOUS METHANOL, PH 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.18000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.13500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.13500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.18000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 21 CD CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 61 CE NZ REMARK 470 LYS A 105 CD CE NZ REMARK 470 LYS A 217 CE NZ REMARK 470 ARG A 256 CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 319 CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 ASP I 24 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2317 O HOH A 2322 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 46 -60.78 -106.53 REMARK 500 ASN A 99 102.80 -160.15 REMARK 500 ASP A 166 43.11 -146.10 REMARK 500 ASP A 184 93.93 63.04 REMARK 500 LEU A 273 47.16 -85.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2045 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2089 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A2104 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2247 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A2256 DISTANCE = 6.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Z21 A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1352 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C33 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA APO REMARK 900 RELATED ID: 4C34 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH STAUROSPORINE BOUND REMARK 900 RELATED ID: 4C35 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH COMPOUND 1 (NU1085) BOUND REMARK 900 RELATED ID: 4C36 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH COMPOUND 15E (CCT147581) BOUND REMARK 900 RELATED ID: 4C38 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH COMPOUND 21E (CCT239066) BOUND REMARK 999 REMARK 999 SEQUENCE REMARK 999 PKA-S6K1 CHIMERA MUTATIONS ARE F54Y, M120L, V123L, L173M REMARK 999 AND Q181K DBREF 4C37 A 0 350 UNP P00517 KAPCA_BOVIN 1 351 DBREF 4C37 I 5 24 UNP Q3SX13 IPKA_BOVIN 6 25 SEQADV 4C37 TYR A 54 UNP P00517 PHE 55 ENGINEERED MUTATION SEQADV 4C37 LEU A 120 UNP P00517 MET 121 ENGINEERED MUTATION SEQADV 4C37 LEU A 123 UNP P00517 VAL 124 ENGINEERED MUTATION SEQADV 4C37 MET A 173 UNP P00517 LEU 174 ENGINEERED MUTATION SEQADV 4C37 LYS A 181 UNP P00517 GLN 182 ENGINEERED MUTATION SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER TYR GLY ARG VAL MET LEU VAL LYS HIS MET GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL LEU GLU TYR LEU PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU MET ILE ASP GLN GLN GLY TYR ILE LYS SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4C37 SEP A 139 SER PHOSPHOSERINE MODRES 4C37 TPO A 197 THR PHOSPHOTHREONINE MODRES 4C37 SEP A 338 SER PHOSPHOSERINE HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET Z21 A1351 18 HET MPD A1352 8 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM Z21 4-(6-BROMO-1-ETHYL-1H-IMIDAZO[4,5-C]PYRIDIN-2-YL)-1,2, HETNAM 2 Z21 5-OXADIAZOL-3-AMINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 Z21 C10 H9 BR N6 O FORMUL 4 MPD C6 H14 O2 FORMUL 5 HOH *556(H2 O) HELIX 1 1 SER A 14 ASN A 32 1 19 HELIX 2 2 HIS A 39 ASP A 41 5 3 HELIX 3 3 LYS A 76 LEU A 82 1 7 HELIX 4 4 GLN A 84 GLN A 96 1 13 HELIX 5 5 GLU A 127 GLY A 136 1 10 HELIX 6 6 SEP A 139 LEU A 160 1 22 HELIX 7 7 LYS A 168 GLU A 170 5 3 HELIX 8 8 THR A 201 LEU A 205 5 5 HELIX 9 9 ALA A 206 LEU A 211 1 6 HELIX 10 10 LYS A 217 GLY A 234 1 18 HELIX 11 11 GLN A 242 SER A 252 1 11 HELIX 12 12 SER A 262 LEU A 273 1 12 HELIX 13 13 VAL A 288 ASN A 293 1 6 HELIX 14 14 HIS A 294 ALA A 298 5 5 HELIX 15 15 ASP A 301 GLN A 307 1 7 HELIX 16 16 THR I 5 ALA I 12 1 8 SHEET 1 AA 5 PHE A 43 GLY A 52 0 SHEET 2 AA 5 GLY A 55 HIS A 62 -1 O GLY A 55 N GLY A 52 SHEET 3 AA 5 HIS A 68 ASP A 75 -1 O TYR A 69 N VAL A 60 SHEET 4 AA 5 ASN A 115 GLU A 121 -1 O LEU A 116 N LEU A 74 SHEET 5 AA 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AB 2 LEU A 162 ILE A 163 0 SHEET 2 AB 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AC 2 LEU A 172 ILE A 174 0 SHEET 2 AC 2 ILE A 180 VAL A 182 -1 O LYS A 181 N MET A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.34 LINK C SEP A 139 N GLU A 140 1555 1555 1.34 LINK C TRP A 196 N TPO A 197 1555 1555 1.32 LINK C TPO A 197 N LEU A 198 1555 1555 1.34 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 11 TYR A 54 ALA A 70 LYS A 72 LEU A 120 SITE 2 AC1 11 GLU A 121 TYR A 122 LEU A 123 MET A 173 SITE 3 AC1 11 THR A 183 ASP A 184 PHE A 327 SITE 1 AC2 5 LEU A 152 GLU A 155 LYS A 292 ILE A 303 SITE 2 AC2 5 TYR A 306 CRYST1 72.360 75.100 80.270 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013316 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012458 0.00000