HEADER TRANSFERASE 02-SEP-13 4C4A TITLE CRYSTAL STRUCTURE OF MOUSE PROTEIN ARGININE METHYLTRANSFERASE 7 IN TITLE 2 COMPLEX WITH SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT7, MYELIN BASIC COMPND 5 PROTEIN-ARGININE N-METHYLTRANSFERASE PRMT7; COMPND 6 EC: 2.1.1.-, 2.1.1.125, 2.1.1.126 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: GENE FROM PLASMID DATABASE MMCD00312554 IMAGE ID SOURCE 6 3583763 ORIGINAL CLONE ID MGC-7929 GI 13879452 GENBANK ACCESSION SOURCE 7 BC006705 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,N.TROFFER-CHARLIER,L.BONNEFOND,J.M.WURTZ,J.CAVARELLI REVDAT 5 01-MAY-24 4C4A 1 REMARK LINK REVDAT 4 23-AUG-17 4C4A 1 REMARK REVDAT 3 24-SEP-14 4C4A 1 JRNL REVDAT 2 10-SEP-14 4C4A 1 TITLE JRNL REVDAT 1 02-JUL-14 4C4A 0 JRNL AUTH V.CURA,N.TROFFER-CHARLIER,J.M.WURTZ,L.BONNEFOND,J.CAVARELLI JRNL TITL STRUCTURAL INSIGHT INTO ARGININE METHYLATION BY THE MOUSE JRNL TITL 2 PROTEIN ARGININE METHYLTRANSFERASE 7: A ZINC FINGER FREEZES JRNL TITL 3 THE MIMIC OF THE DIMERIC STATE INTO A SINGLE ACTIVE SITE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2401 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25195753 JRNL DOI 10.1107/S1399004714014278 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 89408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3569 - 5.2724 0.99 3071 162 0.1564 0.1758 REMARK 3 2 5.2724 - 4.1888 0.99 2912 153 0.1225 0.1373 REMARK 3 3 4.1888 - 3.6604 1.00 2917 153 0.1384 0.1638 REMARK 3 4 3.6604 - 3.3262 0.99 2868 152 0.1411 0.1718 REMARK 3 5 3.3262 - 3.0881 1.00 2870 150 0.1650 0.1952 REMARK 3 6 3.0881 - 2.9062 1.00 2850 146 0.1555 0.1807 REMARK 3 7 2.9062 - 2.7608 1.00 2855 152 0.1626 0.1810 REMARK 3 8 2.7608 - 2.6407 1.00 2825 153 0.1641 0.1962 REMARK 3 9 2.6407 - 2.5391 1.00 2862 150 0.1642 0.2371 REMARK 3 10 2.5391 - 2.4515 1.00 2815 147 0.1646 0.2118 REMARK 3 11 2.4515 - 2.3749 1.00 2801 146 0.1566 0.1966 REMARK 3 12 2.3749 - 2.3070 1.00 2859 149 0.1564 0.1703 REMARK 3 13 2.3070 - 2.2463 1.00 2842 150 0.1528 0.1914 REMARK 3 14 2.2463 - 2.1915 1.00 2815 147 0.1536 0.1840 REMARK 3 15 2.1915 - 2.1417 1.00 2791 149 0.1624 0.2170 REMARK 3 16 2.1417 - 2.0962 1.00 2821 148 0.1592 0.2190 REMARK 3 17 2.0962 - 2.0542 1.00 2786 146 0.1692 0.1930 REMARK 3 18 2.0542 - 2.0155 1.00 2840 145 0.1719 0.2007 REMARK 3 19 2.0155 - 1.9795 1.00 2788 156 0.1826 0.2216 REMARK 3 20 1.9795 - 1.9460 1.00 2803 147 0.1829 0.2075 REMARK 3 21 1.9460 - 1.9146 1.00 2812 144 0.1853 0.2327 REMARK 3 22 1.9146 - 1.8851 1.00 2797 146 0.1908 0.2295 REMARK 3 23 1.8851 - 1.8574 1.00 2785 160 0.2001 0.2271 REMARK 3 24 1.8574 - 1.8312 1.00 2779 167 0.2174 0.2522 REMARK 3 25 1.8312 - 1.8065 1.00 2834 122 0.2216 0.2645 REMARK 3 26 1.8065 - 1.7830 1.00 2785 141 0.2538 0.2912 REMARK 3 27 1.7830 - 1.7608 1.00 2825 130 0.2716 0.3040 REMARK 3 28 1.7608 - 1.7395 1.00 2757 140 0.2916 0.3330 REMARK 3 29 1.7395 - 1.7193 1.00 2813 151 0.3159 0.3240 REMARK 3 30 1.7193 - 1.7000 1.00 2792 136 0.3251 0.3523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5334 REMARK 3 ANGLE : 1.131 7265 REMARK 3 CHIRALITY : 0.045 795 REMARK 3 PLANARITY : 0.005 935 REMARK 3 DIHEDRAL : 14.082 1974 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 27:143) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0414 11.3410 71.9408 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.2034 REMARK 3 T33: 0.2073 T12: -0.0183 REMARK 3 T13: -0.0191 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.4461 L22: 1.4590 REMARK 3 L33: 1.4320 L12: 0.1766 REMARK 3 L13: 0.2210 L23: 0.2132 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0725 S13: 0.0467 REMARK 3 S21: 0.0463 S22: -0.0146 S23: 0.0851 REMARK 3 S31: 0.0192 S32: -0.1374 S33: -0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 144:188) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8202 20.0707 56.8897 REMARK 3 T TENSOR REMARK 3 T11: 0.1937 T22: 0.1813 REMARK 3 T33: 0.1962 T12: -0.0072 REMARK 3 T13: -0.0116 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.1950 L22: 0.6552 REMARK 3 L33: 2.9245 L12: 0.1065 REMARK 3 L13: 1.2996 L23: -0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0378 S13: 0.0873 REMARK 3 S21: 0.0002 S22: -0.0661 S23: -0.1031 REMARK 3 S31: -0.1903 S32: 0.1522 S33: 0.0653 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 189:226) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4405 31.0733 37.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.3352 T22: 0.2880 REMARK 3 T33: 0.2113 T12: 0.0514 REMARK 3 T13: -0.0152 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.4800 L22: 3.4168 REMARK 3 L33: 1.4041 L12: -0.7735 REMARK 3 L13: 0.1801 L23: -0.0568 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: 0.2986 S13: 0.1447 REMARK 3 S21: -0.4888 S22: -0.0662 S23: -0.1142 REMARK 3 S31: -0.1082 S32: -0.1624 S33: 0.0286 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 227:353) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5012 18.8759 44.2095 REMARK 3 T TENSOR REMARK 3 T11: 0.2212 T22: 0.2286 REMARK 3 T33: 0.1964 T12: 0.0230 REMARK 3 T13: 0.0073 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.8538 L22: 0.9062 REMARK 3 L33: 1.6839 L12: -0.2502 REMARK 3 L13: 0.6260 L23: -0.0529 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.1030 S13: 0.0593 REMARK 3 S21: -0.1016 S22: -0.0885 S23: -0.0385 REMARK 3 S31: -0.0662 S32: 0.1078 S33: 0.0675 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 361:531) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0428 30.5853 49.4613 REMARK 3 T TENSOR REMARK 3 T11: 0.1981 T22: 0.2318 REMARK 3 T33: 0.2921 T12: -0.0025 REMARK 3 T13: -0.0538 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.8893 L22: 2.2220 REMARK 3 L33: 0.7104 L12: -0.2662 REMARK 3 L13: -0.1309 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0399 S13: -0.0264 REMARK 3 S21: -0.1723 S22: -0.0279 S23: 0.3523 REMARK 3 S31: -0.0331 S32: -0.1317 S33: -0.0031 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 532:560) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8737 6.2654 73.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.3939 T22: 0.5946 REMARK 3 T33: 0.5218 T12: 0.0092 REMARK 3 T13: 0.0679 T23: 0.0894 REMARK 3 L TENSOR REMARK 3 L11: 2.5634 L22: 0.1740 REMARK 3 L33: 0.4610 L12: -0.3521 REMARK 3 L13: 1.0890 L23: -0.1100 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: -0.5891 S13: 0.1805 REMARK 3 S21: 0.0925 S22: 0.0874 S23: 0.5865 REMARK 3 S31: -0.1798 S32: -0.7144 S33: -0.0257 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 561:627) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1476 10.2349 56.4356 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.2519 REMARK 3 T33: 0.4994 T12: -0.0601 REMARK 3 T13: -0.0044 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.3129 L22: 1.9837 REMARK 3 L33: 0.8145 L12: -0.4287 REMARK 3 L13: 0.1315 L23: -0.2816 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: -0.1717 S13: -0.6142 REMARK 3 S21: 0.0556 S22: 0.0284 S23: 0.6808 REMARK 3 S31: 0.1595 S32: -0.2098 S33: -0.0327 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 628:688) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1408 8.7358 60.3642 REMARK 3 T TENSOR REMARK 3 T11: 0.2639 T22: 0.2790 REMARK 3 T33: 0.4498 T12: -0.0441 REMARK 3 T13: -0.0130 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 2.8778 L22: 2.6380 REMARK 3 L33: 2.7683 L12: -0.6787 REMARK 3 L13: -0.7931 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: -0.3790 S13: -0.5447 REMARK 3 S21: 0.1951 S22: 0.0244 S23: 0.4315 REMARK 3 S31: 0.2474 S32: 0.0099 S33: 0.0234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SAME STRUCTURE SOLVED BY SAD USING A CRYSTAL OF REMARK 200 THE NATIVE PROTEIN SOAKED WITH THIMEROSAL AND PHASED WITH REMARK 200 ANOMALOUS SIGNAL FROM MERCURY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20,000 3.2%, PEG 8,000 12.6%, BTP REMARK 280 PH 7.0 100 MM, SAH 1 MM, NDSB256 100 MM REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.37700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.66100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.66100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.56550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.66100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.66100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.18850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.66100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.66100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 126.56550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.66100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.66100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.18850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 84.37700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 CYS A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 8 REMARK 465 ASN A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 LEU A 15 REMARK 465 GLU A 16 REMARK 465 TRP A 17 REMARK 465 LEU A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 ASP A 21 REMARK 465 GLU A 22 REMARK 465 HIS A 23 REMARK 465 TYR A 24 REMARK 465 ASP A 25 REMARK 465 TYR A 26 REMARK 465 ASP A 354 REMARK 465 GLU A 355 REMARK 465 ASN A 356 REMARK 465 ASP A 357 REMARK 465 SER A 358 REMARK 465 ALA A 359 REMARK 465 TYR A 360 REMARK 465 ALA A 633 REMARK 465 GLU A 634 REMARK 465 ASP A 635 REMARK 465 LYS A 636 REMARK 465 THR A 655 REMARK 465 LEU A 656 REMARK 465 ASP A 657 REMARK 465 LEU A 658 REMARK 465 ARG A 659 REMARK 465 VAL A 660 REMARK 465 PRO A 661 REMARK 465 LEU A 662 REMARK 465 ASN A 663 REMARK 465 GLY A 664 REMARK 465 ASP A 689 REMARK 465 THR A 690 REMARK 465 LEU A 691 REMARK 465 SER A 692 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 5134 O HOH A 5426 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 150 -56.31 69.15 REMARK 500 GLN A 276 -52.11 -133.44 REMARK 500 MET A 315 -138.97 -131.44 REMARK 500 ASP A 340 -141.01 -118.70 REMARK 500 GLN A 369 -33.98 76.01 REMARK 500 SER A 409 134.15 167.15 REMARK 500 ASP A 526 -30.18 -136.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A5109 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A5171 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A5314 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4692 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 219 SG REMARK 620 2 CYS A 366 SG 113.0 REMARK 620 3 CYS A 368 SG 114.8 109.7 REMARK 620 4 HIS A 371 ND1 108.8 113.4 96.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1689 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMX A 2690 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG0 A 3691 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4692 DBREF 4C4A A 1 692 UNP Q922X9 ANM7_MOUSE 1 692 SEQRES 1 A 692 MET LYS VAL PHE CYS GLY ARG ALA ASN PRO THR THR GLY SEQRES 2 A 692 SER LEU GLU TRP LEU GLU GLU ASP GLU HIS TYR ASP TYR SEQRES 3 A 692 HIS GLN GLU ILE ALA ARG SER SER TYR ALA ASP MET LEU SEQRES 4 A 692 HIS ASP LYS ASP ARG ASN ILE LYS TYR TYR GLN GLY ILE SEQRES 5 A 692 ARG ALA ALA VAL SER ARG VAL LYS ASP ARG GLY GLN LYS SEQRES 6 A 692 ALA LEU VAL LEU ASP ILE GLY THR GLY THR GLY LEU LEU SEQRES 7 A 692 SER MET MET ALA VAL THR ALA GLY ALA ASP PHE CYS TYR SEQRES 8 A 692 ALA ILE GLU VAL PHE LYS PRO MET ALA GLU ALA ALA VAL SEQRES 9 A 692 LYS ILE VAL GLU ARG ASN GLY PHE SER ASP LYS ILE LYS SEQRES 10 A 692 VAL ILE ASN LYS HIS SER THR GLU VAL THR VAL GLY PRO SEQRES 11 A 692 ASP GLY ASP LEU PRO CYS ARG ALA ASN ILE LEU ILE THR SEQRES 12 A 692 GLU LEU PHE ASP THR GLU LEU ILE GLY GLU GLY ALA LEU SEQRES 13 A 692 PRO SER TYR GLU HIS ALA HIS LYS HIS LEU VAL GLN GLU SEQRES 14 A 692 ASP CYS GLU ALA VAL PRO HIS ARG ALA THR VAL TYR ALA SEQRES 15 A 692 GLN LEU VAL GLU SER ARG ARG MET TRP SER TRP ASN LYS SEQRES 16 A 692 LEU PHE PRO VAL ARG VAL ARG THR SER LEU GLY GLU GLN SEQRES 17 A 692 VAL ILE VAL PRO PRO SER GLU LEU GLU ARG CYS PRO GLY SEQRES 18 A 692 ALA PRO SER VAL CYS ASP ILE GLN LEU ASN GLN VAL SER SEQRES 19 A 692 PRO ALA ASP PHE THR VAL LEU SER ASP VAL LEU PRO MET SEQRES 20 A 692 PHE SER VAL ASP PHE SER LYS GLN VAL SER SER SER ALA SEQRES 21 A 692 ALA CYS HIS SER ARG GLN PHE VAL PRO LEU ALA SER GLY SEQRES 22 A 692 GLN ALA GLN VAL VAL LEU SER TRP TRP ASP ILE GLU MET SEQRES 23 A 692 ASP PRO GLU GLY LYS ILE LYS CYS THR MET ALA PRO PHE SEQRES 24 A 692 TRP ALA GLN THR ASP PRO GLN GLU LEU GLN TRP ARG ASP SEQRES 25 A 692 HIS TRP MET GLN CYS VAL TYR PHE LEU PRO GLN GLU GLU SEQRES 26 A 692 PRO VAL VAL GLN GLY SER PRO ARG CYS LEU VAL ALA HIS SEQRES 27 A 692 HIS ASP ASP TYR CYS VAL TRP TYR SER LEU GLN ARG THR SEQRES 28 A 692 SER PRO ASP GLU ASN ASP SER ALA TYR GLN VAL ARG PRO SEQRES 29 A 692 VAL CYS ASP CYS GLN ALA HIS LEU LEU TRP ASN ARG PRO SEQRES 30 A 692 ARG PHE GLY GLU ILE ASN ASP GLN ASP ARG THR ASP HIS SEQRES 31 A 692 TYR ALA GLN ALA LEU ARG THR VAL LEU LEU PRO GLY SER SEQRES 32 A 692 VAL CYS LEU CYS VAL SER ASP GLY SER LEU LEU SER MET SEQRES 33 A 692 LEU ALA HIS HIS LEU GLY ALA GLU GLN VAL PHE THR VAL SEQRES 34 A 692 GLU SER SER VAL ALA SER TYR ARG LEU MET LYS ARG ILE SEQRES 35 A 692 PHE LYS VAL ASN HIS LEU GLU ASP LYS ILE SER VAL ILE SEQRES 36 A 692 ASN LYS ARG PRO GLU LEU LEU THR ALA ALA ASP LEU GLU SEQRES 37 A 692 GLY LYS LYS VAL SER LEU LEU LEU GLY GLU PRO PHE PHE SEQRES 38 A 692 THR THR SER LEU LEU PRO TRP HIS ASN LEU TYR PHE TRP SEQRES 39 A 692 TYR VAL ARG THR SER VAL ASP GLN HIS LEU ALA PRO GLY SEQRES 40 A 692 ALA VAL VAL MET PRO GLN ALA ALA SER LEU HIS ALA VAL SEQRES 41 A 692 ILE VAL GLU PHE ARG ASP LEU TRP ARG ILE ARG SER PRO SEQRES 42 A 692 CYS GLY ASP CYS GLU GLY PHE ASP VAL HIS ILE MET ASP SEQRES 43 A 692 ASP MET ILE LYS HIS SER LEU ASP PHE ARG GLU SER ARG SEQRES 44 A 692 GLU ALA GLU PRO HIS PRO LEU TRP GLU TYR PRO CYS ARG SEQRES 45 A 692 SER LEU SER LYS PRO GLN GLU ILE LEU THR PHE ASP PHE SEQRES 46 A 692 GLN GLN PRO ILE PRO GLN GLN PRO MET GLN SER LYS GLY SEQRES 47 A 692 THR MET GLU LEU THR ARG PRO GLY LYS SER HIS GLY ALA SEQRES 48 A 692 VAL LEU TRP MET GLU TYR GLN LEU THR PRO ASP SER THR SEQRES 49 A 692 ILE SER THR GLY LEU ILE ASN PRO ALA GLU ASP LYS GLY SEQRES 50 A 692 ASP CYS CYS TRP ASN PRO HIS CYS LYS GLN ALA VAL TYR SEQRES 51 A 692 PHE LEU SER THR THR LEU ASP LEU ARG VAL PRO LEU ASN SEQRES 52 A 692 GLY PRO ARG SER VAL SER TYR VAL VAL GLU PHE HIS PRO SEQRES 53 A 692 LEU THR GLY ASP ILE THR MET GLU PHE ARG LEU ALA ASP SEQRES 54 A 692 THR LEU SER HET SAH A1689 26 HET DMX A2690 17 HET PG0 A3691 8 HET ZN A4692 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM DMX 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETNAM ZN ZINC ION HETSYN PG0 PEG 6000 FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 DMX C12 H19 N O3 S FORMUL 4 PG0 C5 H12 O3 FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *692(H2 O) HELIX 1 1 HIS A 27 ARG A 32 1 6 HELIX 2 2 SER A 34 HIS A 40 1 7 HELIX 3 3 ASP A 41 ARG A 62 1 22 HELIX 4 4 GLY A 76 GLY A 86 1 11 HELIX 5 5 PHE A 96 ASN A 110 1 15 HELIX 6 6 HIS A 122 VAL A 126 5 5 HELIX 7 7 GLY A 154 LEU A 166 1 13 HELIX 8 8 SER A 187 SER A 192 1 6 HELIX 9 9 PRO A 213 CYS A 219 1 7 HELIX 10 10 GLN A 229 VAL A 233 5 5 HELIX 11 11 SER A 234 PHE A 238 5 5 HELIX 12 12 PRO A 298 GLN A 302 5 5 HELIX 13 13 ASP A 304 LEU A 308 5 5 HELIX 14 14 GLN A 369 TRP A 374 1 6 HELIX 15 15 ASN A 375 ASN A 383 1 9 HELIX 16 16 ASP A 384 LEU A 399 1 16 HELIX 17 17 LEU A 413 LEU A 421 1 9 HELIX 18 18 SER A 432 ASN A 446 1 15 HELIX 19 19 ARG A 458 LEU A 462 5 5 HELIX 20 20 ALA A 464 GLU A 468 5 5 HELIX 21 21 LEU A 486 ASN A 490 5 5 HELIX 22 22 LEU A 491 VAL A 500 1 10 HELIX 23 23 ASP A 526 SER A 532 5 7 HELIX 24 24 VAL A 542 ASP A 554 1 13 HELIX 25 25 PRO A 565 TYR A 569 5 5 SHEET 1 AA 5 ILE A 116 ILE A 119 0 SHEET 2 AA 5 PHE A 89 ILE A 93 1 O CYS A 90 N LYS A 117 SHEET 3 AA 5 LEU A 67 ILE A 71 1 O VAL A 68 N TYR A 91 SHEET 4 AA 5 ALA A 138 THR A 143 1 N ASN A 139 O LEU A 67 SHEET 5 AA 5 VAL A 167 VAL A 174 1 N GLN A 168 O ALA A 138 SHEET 1 AB 4 CYS A 226 ILE A 228 0 SHEET 2 AB 4 GLN A 316 VAL A 327 -1 O GLN A 316 N ILE A 228 SHEET 3 AB 4 GLY A 273 GLU A 285 -1 O GLY A 273 N VAL A 327 SHEET 4 AB 4 LYS A 293 THR A 295 -1 O CYS A 294 N ILE A 284 SHEET 1 AC 5 CYS A 226 ILE A 228 0 SHEET 2 AC 5 GLN A 316 VAL A 327 -1 O GLN A 316 N ILE A 228 SHEET 3 AC 5 GLY A 273 GLU A 285 -1 O GLY A 273 N VAL A 327 SHEET 4 AC 5 ARG A 177 GLU A 186 -1 O ARG A 177 N GLU A 285 SHEET 5 AC 5 THR A 239 VAL A 240 -1 O THR A 239 N GLU A 186 SHEET 1 AD 2 LEU A 245 ASP A 251 0 SHEET 2 AD 2 ARG A 177 GLU A 186 -1 O ALA A 178 N VAL A 250 SHEET 1 AE 5 CYS A 226 ILE A 228 0 SHEET 2 AE 5 GLN A 316 VAL A 327 -1 O GLN A 316 N ILE A 228 SHEET 3 AE 5 GLY A 273 GLU A 285 -1 O GLY A 273 N VAL A 327 SHEET 4 AE 5 ARG A 177 GLU A 186 -1 O ARG A 177 N GLU A 285 SHEET 5 AE 5 LEU A 245 ASP A 251 -1 O LEU A 245 N ALA A 182 SHEET 1 AF 2 LYS A 293 THR A 295 0 SHEET 2 AF 2 GLY A 273 GLU A 285 -1 O ILE A 284 N CYS A 294 SHEET 1 AG 2 VAL A 199 THR A 203 0 SHEET 2 AG 2 GLY A 206 ILE A 210 -1 O GLY A 206 N THR A 203 SHEET 1 AH 3 ALA A 261 PHE A 267 0 SHEET 2 AH 3 ARG A 333 HIS A 339 -1 O ARG A 333 N PHE A 267 SHEET 3 AH 3 VAL A 344 LEU A 348 -1 O TRP A 345 N HIS A 338 SHEET 1 AI 5 ILE A 452 ILE A 455 0 SHEET 2 AI 5 GLN A 425 VAL A 429 1 O VAL A 426 N SER A 453 SHEET 3 AI 5 VAL A 404 VAL A 408 1 O CYS A 405 N PHE A 427 SHEET 4 AI 5 VAL A 472 LEU A 476 1 N SER A 473 O VAL A 404 SHEET 5 AI 5 LEU A 504 MET A 511 1 N ALA A 505 O VAL A 472 SHEET 1 AJ 4 GLU A 562 HIS A 564 0 SHEET 2 AJ 4 GLN A 647 PHE A 651 -1 O GLN A 647 N HIS A 564 SHEET 3 AJ 4 GLY A 610 THR A 620 -1 O ALA A 611 N TYR A 650 SHEET 4 AJ 4 SER A 623 SER A 626 -1 O SER A 623 N THR A 620 SHEET 1 AK 5 GLU A 562 HIS A 564 0 SHEET 2 AK 5 GLN A 647 PHE A 651 -1 O GLN A 647 N HIS A 564 SHEET 3 AK 5 GLY A 610 THR A 620 -1 O ALA A 611 N TYR A 650 SHEET 4 AK 5 ALA A 514 PHE A 524 -1 O ALA A 514 N GLN A 618 SHEET 5 AK 5 CYS A 571 SER A 573 -1 O ARG A 572 N GLU A 523 SHEET 1 AL 2 GLN A 578 ASP A 584 0 SHEET 2 AL 2 ALA A 514 PHE A 524 -1 O ALA A 515 N PHE A 583 SHEET 1 AM 5 GLU A 562 HIS A 564 0 SHEET 2 AM 5 GLN A 647 PHE A 651 -1 O GLN A 647 N HIS A 564 SHEET 3 AM 5 GLY A 610 THR A 620 -1 O ALA A 611 N TYR A 650 SHEET 4 AM 5 ALA A 514 PHE A 524 -1 O ALA A 514 N GLN A 618 SHEET 5 AM 5 GLN A 578 ASP A 584 -1 O GLN A 578 N ALA A 519 SHEET 1 AN 2 SER A 623 SER A 626 0 SHEET 2 AN 2 GLY A 610 THR A 620 -1 O TYR A 617 N ILE A 625 SHEET 1 AO 2 ASP A 536 CYS A 537 0 SHEET 2 AO 2 PHE A 540 ASP A 541 -1 O PHE A 540 N CYS A 537 SHEET 1 AP 3 MET A 594 GLU A 601 0 SHEET 2 AP 3 SER A 667 PHE A 674 -1 O VAL A 668 N MET A 600 SHEET 3 AP 3 ILE A 681 ALA A 688 -1 O THR A 682 N GLU A 673 LINK SG CYS A 219 ZN ZN A4692 1555 1555 2.32 LINK SG CYS A 366 ZN ZN A4692 1555 1555 2.31 LINK SG CYS A 368 ZN ZN A4692 1555 1555 2.33 LINK ND1 HIS A 371 ZN ZN A4692 1555 1555 2.15 CISPEP 1 VAL A 174 PRO A 175 0 -0.40 CISPEP 2 SER A 352 PRO A 353 0 0.00 CISPEP 3 GLU A 478 PRO A 479 0 -9.09 CISPEP 4 MET A 511 PRO A 512 0 3.84 SITE 1 AC1 19 TYR A 35 MET A 38 ARG A 44 GLY A 72 SITE 2 AC1 19 THR A 73 LEU A 78 GLU A 94 VAL A 95 SITE 3 AC1 19 LYS A 121 HIS A 122 SER A 123 GLU A 144 SITE 4 AC1 19 LEU A 145 SER A 158 HOH A5096 HOH A5097 SITE 5 AC1 19 HOH A5103 HOH A5223 HOH A5692 SITE 1 AC2 8 ARG A 458 THR A 483 LEU A 491 TYR A 492 SITE 2 AC2 8 PRO A 676 LEU A 677 THR A 678 HOH A5575 SITE 1 AC3 5 HIS A 371 LEU A 372 LEU A 373 ASN A 375 SITE 2 AC3 5 HOH A5471 SITE 1 AC4 4 CYS A 219 CYS A 366 CYS A 368 HIS A 371 CRYST1 97.322 97.322 168.754 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010275 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005926 0.00000