data_4C67 # _entry.id 4C67 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4C67 PDBE EBI-58385 WWPDB D_1290058385 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4C66 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'DISCOVERY OF EPIGENETIC REGULATOR I-BET762: LEAD OPTIMIZATION TO AFFORD A CLINICAL CANDIDATE INHIBITOR OF THE BET BROMODOMAINS' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4C67 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-09-17 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chung, C.' 1 'Mirguet, O.' 2 # _citation.id primary _citation.title 'Discovery of Epigenetic Regulator I-Bet762: Lead Optimization to Afford a Clinical Candidate Inhibitor of the Bet Bromodomains.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 56 _citation.page_first 7501 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24015967 _citation.pdbx_database_id_DOI 10.1021/JM401088K # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mirguet, O.' 1 primary 'Gosmini, R.' 2 primary 'Toum, J.' 3 primary 'Clement, C.' 4 primary 'Barnathan, M.' 5 primary 'Brusq, J.' 6 primary 'Mordaunt, J.E.' 7 primary 'Grimes, R.' 8 primary 'Crowe, M.' 9 primary 'Pineau, O.' 10 primary 'Ajakane, M.' 11 primary 'Daugan, A.' 12 primary 'Jeffrey, P.' 13 primary 'Cutler, L.' 14 primary 'Haynes, A.' 15 primary 'Smithers, N.' 16 primary 'Chung, C.' 17 primary 'Bamborough, P.' 18 primary 'Uings, I.J.' 19 primary 'Lewis, T.' 20 primary 'Witherington, J.' 21 primary 'Parr, N.' 22 primary 'Prinjha, R.' 23 primary 'Nicodeme, E.' 24 # _cell.entry_id 4C67 _cell.length_a 37.121 _cell.length_b 44.248 _cell.length_c 78.470 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C67 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BROMODOMAIN-CONTAINING PROTEIN 4' 15099.380 1 ? ? 'N-TERMINAL BROMODOMAIN, RESIDUES 44-168' ? 2 non-polymer syn '13-methyl-7-phenyl-3-thia-1,8,11,12-tetraazatricyclo trideca-2(6),4,7,10,12-pentaene' 280.348 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 water nat water 18.015 254 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PROTEIN HUNK1, BRD4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_seq_one_letter_code_can ;SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ASN n 1 4 PRO n 1 5 PRO n 1 6 PRO n 1 7 PRO n 1 8 GLU n 1 9 THR n 1 10 SER n 1 11 ASN n 1 12 PRO n 1 13 ASN n 1 14 LYS n 1 15 PRO n 1 16 LYS n 1 17 ARG n 1 18 GLN n 1 19 THR n 1 20 ASN n 1 21 GLN n 1 22 LEU n 1 23 GLN n 1 24 TYR n 1 25 LEU n 1 26 LEU n 1 27 ARG n 1 28 VAL n 1 29 VAL n 1 30 LEU n 1 31 LYS n 1 32 THR n 1 33 LEU n 1 34 TRP n 1 35 LYS n 1 36 HIS n 1 37 GLN n 1 38 PHE n 1 39 ALA n 1 40 TRP n 1 41 PRO n 1 42 PHE n 1 43 GLN n 1 44 GLN n 1 45 PRO n 1 46 VAL n 1 47 ASP n 1 48 ALA n 1 49 VAL n 1 50 LYS n 1 51 LEU n 1 52 ASN n 1 53 LEU n 1 54 PRO n 1 55 ASP n 1 56 TYR n 1 57 TYR n 1 58 LYS n 1 59 ILE n 1 60 ILE n 1 61 LYS n 1 62 THR n 1 63 PRO n 1 64 MET n 1 65 ASP n 1 66 MET n 1 67 GLY n 1 68 THR n 1 69 ILE n 1 70 LYS n 1 71 LYS n 1 72 ARG n 1 73 LEU n 1 74 GLU n 1 75 ASN n 1 76 ASN n 1 77 TYR n 1 78 TYR n 1 79 TRP n 1 80 ASN n 1 81 ALA n 1 82 GLN n 1 83 GLU n 1 84 CYS n 1 85 ILE n 1 86 GLN n 1 87 ASP n 1 88 PHE n 1 89 ASN n 1 90 THR n 1 91 MET n 1 92 PHE n 1 93 THR n 1 94 ASN n 1 95 CYS n 1 96 TYR n 1 97 ILE n 1 98 TYR n 1 99 ASN n 1 100 LYS n 1 101 PRO n 1 102 GLY n 1 103 ASP n 1 104 ASP n 1 105 ILE n 1 106 VAL n 1 107 LEU n 1 108 MET n 1 109 ALA n 1 110 GLU n 1 111 ALA n 1 112 LEU n 1 113 GLU n 1 114 LYS n 1 115 LEU n 1 116 PHE n 1 117 LEU n 1 118 GLN n 1 119 LYS n 1 120 ILE n 1 121 ASN n 1 122 GLU n 1 123 LEU n 1 124 PRO n 1 125 THR n 1 126 GLU n 1 127 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD4_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O60885 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4C67 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O60885 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 44 _struct_ref_seq.pdbx_auth_seq_align_end 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4C67 SER A 1 ? UNP O60885 ? ? 'expression tag' 42 1 1 4C67 MET A 2 ? UNP O60885 ? ? 'expression tag' 43 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 L5S non-polymer . '13-methyl-7-phenyl-3-thia-1,8,11,12-tetraazatricyclo trideca-2(6),4,7,10,12-pentaene' ? 'C15 H12 N4 S' 280.348 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4C67 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.36 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2M CACL2, 0.1M MES PH6.5, 20% PEG6000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-09-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.976 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.976 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4C67 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.25 _reflns.d_resolution_high 1.55 _reflns.number_obs 18392 _reflns.number_all ? _reflns.percent_possible_obs 94.7 _reflns.pdbx_Rmerge_I_obs 0.03 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 39.80 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.60 _reflns_shell.percent_possible_all 67.9 _reflns_shell.Rmerge_I_obs 0.05 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 17.70 _reflns_shell.pdbx_redundancy 3.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4C67 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 18392 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.25 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 94.24 _refine.ls_R_factor_obs 0.16456 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16343 _refine.ls_R_factor_R_free 0.18585 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 939 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 11.305 _refine.aniso_B[1][1] 0.54 _refine.aniso_B[2][2] -0.24 _refine.aniso_B[3][3] -0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.089 _refine.pdbx_overall_ESU_R_Free 0.084 _refine.overall_SU_ML 0.045 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.208 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1062 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 254 _refine_hist.number_atoms_total 1344 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 44.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.005 0.020 ? 1147 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 793 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.015 1.978 ? 1563 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.796 3.000 ? 1948 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.897 5.000 ? 132 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.418 25.636 ? 55 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 10.683 15.000 ? 203 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7.209 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.055 0.200 ? 163 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 1337 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 215 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.548 _refine_ls_shell.d_res_low 1.588 _refine_ls_shell.number_reflns_R_work 799 _refine_ls_shell.R_factor_R_work 0.147 _refine_ls_shell.percent_reflns_obs 62.54 _refine_ls_shell.R_factor_R_free 0.156 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4C67 _struct.title 'Discovery of Epigenetic Regulator I-BET762: Lead Optimization to Afford a Clinical Candidate Inhibitor of the BET Bromodomains' _struct.pdbx_descriptor 'BROMODOMAIN-CONTAINING PROTEIN 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4C67 _struct_keywords.pdbx_keywords 'CELL CYCLE' _struct_keywords.text 'CELL CYCLE, HISTONE, EPIGENETIC READER BRD4, BROMODOMAIN CONTAINING PROTEIN 4, ANTAGONIST' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 19 ? VAL A 28 ? THR A 60 VAL A 69 1 ? 10 HELX_P HELX_P2 2 VAL A 28 ? LYS A 35 ? VAL A 69 LYS A 76 1 ? 8 HELX_P HELX_P3 3 ALA A 39 ? GLN A 43 ? ALA A 80 GLN A 84 5 ? 5 HELX_P HELX_P4 4 ASP A 55 ? ILE A 60 ? ASP A 96 ILE A 101 1 ? 6 HELX_P HELX_P5 5 ASP A 65 ? ASN A 75 ? ASP A 106 ASN A 116 1 ? 11 HELX_P HELX_P6 6 ASN A 80 ? ASN A 99 ? ASN A 121 ASN A 140 1 ? 20 HELX_P HELX_P7 7 ASP A 103 ? ASN A 121 ? ASP A 144 ASN A 162 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE L5S A 1170' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 1171' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 1172' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TRP A 40 ? TRP A 81 . ? 1_555 ? 2 AC1 8 PRO A 41 ? PRO A 82 . ? 1_555 ? 3 AC1 8 LEU A 51 ? LEU A 92 . ? 1_555 ? 4 AC1 8 LYS A 58 ? LYS A 99 . ? 4_545 ? 5 AC1 8 ASN A 99 ? ASN A 140 . ? 1_555 ? 6 AC1 8 ILE A 105 ? ILE A 146 . ? 1_555 ? 7 AC1 8 HOH E . ? HOH A 2160 . ? 1_555 ? 8 AC1 8 HOH E . ? HOH A 2211 . ? 1_555 ? 9 AC2 3 ASN A 76 ? ASN A 117 . ? 2_455 ? 10 AC2 3 HOH E . ? HOH A 2164 . ? 4_545 ? 11 AC2 3 HOH E . ? HOH A 2254 . ? 1_555 ? 12 AC3 6 ILE A 59 ? ILE A 100 . ? 1_555 ? 13 AC3 6 ILE A 60 ? ILE A 101 . ? 1_555 ? 14 AC3 6 LYS A 61 ? LYS A 102 . ? 1_555 ? 15 AC3 6 THR A 62 ? THR A 103 . ? 1_555 ? 16 AC3 6 ASN A 94 ? ASN A 135 . ? 1_555 ? 17 AC3 6 HOH E . ? HOH A 2168 . ? 1_555 ? # _database_PDB_matrix.entry_id 4C67 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4C67 _atom_sites.fract_transf_matrix[1][1] 0.026939 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022600 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012744 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 42 42 SER SER A . n A 1 2 MET 2 43 43 MET MET A . n A 1 3 ASN 3 44 44 ASN ASN A . n A 1 4 PRO 4 45 45 PRO PRO A . n A 1 5 PRO 5 46 46 PRO PRO A . n A 1 6 PRO 6 47 47 PRO PRO A . n A 1 7 PRO 7 48 48 PRO PRO A . n A 1 8 GLU 8 49 49 GLU GLU A . n A 1 9 THR 9 50 50 THR THR A . n A 1 10 SER 10 51 51 SER SER A . n A 1 11 ASN 11 52 52 ASN ASN A . n A 1 12 PRO 12 53 53 PRO PRO A . n A 1 13 ASN 13 54 54 ASN ASN A . n A 1 14 LYS 14 55 55 LYS LYS A . n A 1 15 PRO 15 56 56 PRO PRO A . n A 1 16 LYS 16 57 57 LYS LYS A . n A 1 17 ARG 17 58 58 ARG ARG A . n A 1 18 GLN 18 59 59 GLN GLN A . n A 1 19 THR 19 60 60 THR THR A . n A 1 20 ASN 20 61 61 ASN ASN A . n A 1 21 GLN 21 62 62 GLN GLN A . n A 1 22 LEU 22 63 63 LEU LEU A . n A 1 23 GLN 23 64 64 GLN GLN A . n A 1 24 TYR 24 65 65 TYR TYR A . n A 1 25 LEU 25 66 66 LEU LEU A . n A 1 26 LEU 26 67 67 LEU LEU A . n A 1 27 ARG 27 68 68 ARG ARG A . n A 1 28 VAL 28 69 69 VAL VAL A . n A 1 29 VAL 29 70 70 VAL VAL A . n A 1 30 LEU 30 71 71 LEU LEU A . n A 1 31 LYS 31 72 72 LYS LYS A . n A 1 32 THR 32 73 73 THR THR A . n A 1 33 LEU 33 74 74 LEU LEU A . n A 1 34 TRP 34 75 75 TRP TRP A . n A 1 35 LYS 35 76 76 LYS LYS A . n A 1 36 HIS 36 77 77 HIS HIS A . n A 1 37 GLN 37 78 78 GLN GLN A . n A 1 38 PHE 38 79 79 PHE PHE A . n A 1 39 ALA 39 80 80 ALA ALA A . n A 1 40 TRP 40 81 81 TRP TRP A . n A 1 41 PRO 41 82 82 PRO PRO A . n A 1 42 PHE 42 83 83 PHE PHE A . n A 1 43 GLN 43 84 84 GLN GLN A . n A 1 44 GLN 44 85 85 GLN GLN A . n A 1 45 PRO 45 86 86 PRO PRO A . n A 1 46 VAL 46 87 87 VAL VAL A . n A 1 47 ASP 47 88 88 ASP ASP A . n A 1 48 ALA 48 89 89 ALA ALA A . n A 1 49 VAL 49 90 90 VAL VAL A . n A 1 50 LYS 50 91 91 LYS LYS A . n A 1 51 LEU 51 92 92 LEU LEU A . n A 1 52 ASN 52 93 93 ASN ASN A . n A 1 53 LEU 53 94 94 LEU LEU A . n A 1 54 PRO 54 95 95 PRO PRO A . n A 1 55 ASP 55 96 96 ASP ASP A . n A 1 56 TYR 56 97 97 TYR TYR A . n A 1 57 TYR 57 98 98 TYR TYR A . n A 1 58 LYS 58 99 99 LYS LYS A . n A 1 59 ILE 59 100 100 ILE ILE A . n A 1 60 ILE 60 101 101 ILE ILE A . n A 1 61 LYS 61 102 102 LYS LYS A . n A 1 62 THR 62 103 103 THR THR A . n A 1 63 PRO 63 104 104 PRO PRO A . n A 1 64 MET 64 105 105 MET MET A . n A 1 65 ASP 65 106 106 ASP ASP A . n A 1 66 MET 66 107 107 MET MET A . n A 1 67 GLY 67 108 108 GLY GLY A . n A 1 68 THR 68 109 109 THR THR A . n A 1 69 ILE 69 110 110 ILE ILE A . n A 1 70 LYS 70 111 111 LYS LYS A . n A 1 71 LYS 71 112 112 LYS LYS A . n A 1 72 ARG 72 113 113 ARG ARG A . n A 1 73 LEU 73 114 114 LEU LEU A . n A 1 74 GLU 74 115 115 GLU GLU A . n A 1 75 ASN 75 116 116 ASN ASN A . n A 1 76 ASN 76 117 117 ASN ASN A . n A 1 77 TYR 77 118 118 TYR TYR A . n A 1 78 TYR 78 119 119 TYR TYR A . n A 1 79 TRP 79 120 120 TRP TRP A . n A 1 80 ASN 80 121 121 ASN ASN A . n A 1 81 ALA 81 122 122 ALA ALA A . n A 1 82 GLN 82 123 123 GLN GLN A . n A 1 83 GLU 83 124 124 GLU GLU A . n A 1 84 CYS 84 125 125 CYS CYS A . n A 1 85 ILE 85 126 126 ILE ILE A . n A 1 86 GLN 86 127 127 GLN GLN A . n A 1 87 ASP 87 128 128 ASP ASP A . n A 1 88 PHE 88 129 129 PHE PHE A . n A 1 89 ASN 89 130 130 ASN ASN A . n A 1 90 THR 90 131 131 THR THR A . n A 1 91 MET 91 132 132 MET MET A . n A 1 92 PHE 92 133 133 PHE PHE A . n A 1 93 THR 93 134 134 THR THR A . n A 1 94 ASN 94 135 135 ASN ASN A . n A 1 95 CYS 95 136 136 CYS CYS A . n A 1 96 TYR 96 137 137 TYR TYR A . n A 1 97 ILE 97 138 138 ILE ILE A . n A 1 98 TYR 98 139 139 TYR TYR A . n A 1 99 ASN 99 140 140 ASN ASN A . n A 1 100 LYS 100 141 141 LYS LYS A . n A 1 101 PRO 101 142 142 PRO PRO A . n A 1 102 GLY 102 143 143 GLY GLY A . n A 1 103 ASP 103 144 144 ASP ASP A . n A 1 104 ASP 104 145 145 ASP ASP A . n A 1 105 ILE 105 146 146 ILE ILE A . n A 1 106 VAL 106 147 147 VAL VAL A . n A 1 107 LEU 107 148 148 LEU LEU A . n A 1 108 MET 108 149 149 MET MET A . n A 1 109 ALA 109 150 150 ALA ALA A . n A 1 110 GLU 110 151 151 GLU GLU A . n A 1 111 ALA 111 152 152 ALA ALA A . n A 1 112 LEU 112 153 153 LEU LEU A . n A 1 113 GLU 113 154 154 GLU GLU A . n A 1 114 LYS 114 155 155 LYS LYS A . n A 1 115 LEU 115 156 156 LEU LEU A . n A 1 116 PHE 116 157 157 PHE PHE A . n A 1 117 LEU 117 158 158 LEU LEU A . n A 1 118 GLN 118 159 159 GLN GLN A . n A 1 119 LYS 119 160 160 LYS LYS A . n A 1 120 ILE 120 161 161 ILE ILE A . n A 1 121 ASN 121 162 162 ASN ASN A . n A 1 122 GLU 122 163 163 GLU GLU A . n A 1 123 LEU 123 164 164 LEU LEU A . n A 1 124 PRO 124 165 165 PRO PRO A . n A 1 125 THR 125 166 166 THR THR A . n A 1 126 GLU 126 167 167 GLU GLU A . n A 1 127 GLU 127 168 168 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L5S 1 1170 1170 L5S L5S A . C 3 EDO 1 1171 1171 EDO EDO A . D 3 EDO 1 1172 1172 EDO EDO A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . E 4 HOH 12 2012 2012 HOH HOH A . E 4 HOH 13 2013 2013 HOH HOH A . E 4 HOH 14 2014 2014 HOH HOH A . E 4 HOH 15 2015 2015 HOH HOH A . E 4 HOH 16 2016 2016 HOH HOH A . E 4 HOH 17 2017 2017 HOH HOH A . E 4 HOH 18 2018 2018 HOH HOH A . E 4 HOH 19 2019 2019 HOH HOH A . E 4 HOH 20 2020 2020 HOH HOH A . E 4 HOH 21 2021 2021 HOH HOH A . E 4 HOH 22 2022 2022 HOH HOH A . E 4 HOH 23 2023 2023 HOH HOH A . E 4 HOH 24 2024 2024 HOH HOH A . E 4 HOH 25 2025 2025 HOH HOH A . E 4 HOH 26 2026 2026 HOH HOH A . E 4 HOH 27 2027 2027 HOH HOH A . E 4 HOH 28 2028 2028 HOH HOH A . E 4 HOH 29 2029 2029 HOH HOH A . E 4 HOH 30 2030 2030 HOH HOH A . E 4 HOH 31 2031 2031 HOH HOH A . E 4 HOH 32 2032 2032 HOH HOH A . E 4 HOH 33 2033 2033 HOH HOH A . E 4 HOH 34 2034 2034 HOH HOH A . E 4 HOH 35 2035 2035 HOH HOH A . E 4 HOH 36 2036 2036 HOH HOH A . E 4 HOH 37 2037 2037 HOH HOH A . E 4 HOH 38 2038 2038 HOH HOH A . E 4 HOH 39 2039 2039 HOH HOH A . E 4 HOH 40 2040 2040 HOH HOH A . E 4 HOH 41 2041 2041 HOH HOH A . E 4 HOH 42 2042 2042 HOH HOH A . E 4 HOH 43 2043 2043 HOH HOH A . E 4 HOH 44 2044 2044 HOH HOH A . E 4 HOH 45 2045 2045 HOH HOH A . E 4 HOH 46 2046 2046 HOH HOH A . E 4 HOH 47 2047 2047 HOH HOH A . E 4 HOH 48 2048 2048 HOH HOH A . E 4 HOH 49 2049 2049 HOH HOH A . E 4 HOH 50 2050 2050 HOH HOH A . E 4 HOH 51 2051 2051 HOH HOH A . E 4 HOH 52 2052 2052 HOH HOH A . E 4 HOH 53 2053 2053 HOH HOH A . E 4 HOH 54 2054 2054 HOH HOH A . E 4 HOH 55 2055 2055 HOH HOH A . E 4 HOH 56 2056 2056 HOH HOH A . E 4 HOH 57 2057 2057 HOH HOH A . E 4 HOH 58 2058 2058 HOH HOH A . E 4 HOH 59 2059 2059 HOH HOH A . E 4 HOH 60 2060 2060 HOH HOH A . E 4 HOH 61 2061 2061 HOH HOH A . E 4 HOH 62 2062 2062 HOH HOH A . E 4 HOH 63 2063 2063 HOH HOH A . E 4 HOH 64 2064 2064 HOH HOH A . E 4 HOH 65 2065 2065 HOH HOH A . E 4 HOH 66 2066 2066 HOH HOH A . E 4 HOH 67 2067 2067 HOH HOH A . E 4 HOH 68 2068 2068 HOH HOH A . E 4 HOH 69 2069 2069 HOH HOH A . E 4 HOH 70 2070 2070 HOH HOH A . E 4 HOH 71 2071 2071 HOH HOH A . E 4 HOH 72 2072 2072 HOH HOH A . E 4 HOH 73 2073 2073 HOH HOH A . E 4 HOH 74 2074 2074 HOH HOH A . E 4 HOH 75 2075 2075 HOH HOH A . E 4 HOH 76 2076 2076 HOH HOH A . E 4 HOH 77 2077 2077 HOH HOH A . E 4 HOH 78 2078 2078 HOH HOH A . E 4 HOH 79 2079 2079 HOH HOH A . E 4 HOH 80 2080 2080 HOH HOH A . E 4 HOH 81 2081 2081 HOH HOH A . E 4 HOH 82 2082 2082 HOH HOH A . E 4 HOH 83 2083 2083 HOH HOH A . E 4 HOH 84 2084 2084 HOH HOH A . E 4 HOH 85 2085 2085 HOH HOH A . E 4 HOH 86 2086 2086 HOH HOH A . E 4 HOH 87 2087 2087 HOH HOH A . E 4 HOH 88 2088 2088 HOH HOH A . E 4 HOH 89 2089 2089 HOH HOH A . E 4 HOH 90 2090 2090 HOH HOH A . E 4 HOH 91 2091 2091 HOH HOH A . E 4 HOH 92 2092 2092 HOH HOH A . E 4 HOH 93 2093 2093 HOH HOH A . E 4 HOH 94 2094 2094 HOH HOH A . E 4 HOH 95 2095 2095 HOH HOH A . E 4 HOH 96 2096 2096 HOH HOH A . E 4 HOH 97 2097 2097 HOH HOH A . E 4 HOH 98 2098 2098 HOH HOH A . E 4 HOH 99 2099 2099 HOH HOH A . E 4 HOH 100 2100 2100 HOH HOH A . E 4 HOH 101 2101 2101 HOH HOH A . E 4 HOH 102 2102 2102 HOH HOH A . E 4 HOH 103 2103 2103 HOH HOH A . E 4 HOH 104 2104 2104 HOH HOH A . E 4 HOH 105 2105 2105 HOH HOH A . E 4 HOH 106 2106 2106 HOH HOH A . E 4 HOH 107 2107 2107 HOH HOH A . E 4 HOH 108 2108 2108 HOH HOH A . E 4 HOH 109 2109 2109 HOH HOH A . E 4 HOH 110 2110 2110 HOH HOH A . E 4 HOH 111 2111 2111 HOH HOH A . E 4 HOH 112 2112 2112 HOH HOH A . E 4 HOH 113 2113 2113 HOH HOH A . E 4 HOH 114 2114 2114 HOH HOH A . E 4 HOH 115 2115 2115 HOH HOH A . E 4 HOH 116 2116 2116 HOH HOH A . E 4 HOH 117 2117 2117 HOH HOH A . E 4 HOH 118 2118 2118 HOH HOH A . E 4 HOH 119 2119 2119 HOH HOH A . E 4 HOH 120 2120 2120 HOH HOH A . E 4 HOH 121 2121 2121 HOH HOH A . E 4 HOH 122 2122 2122 HOH HOH A . E 4 HOH 123 2123 2123 HOH HOH A . E 4 HOH 124 2124 2124 HOH HOH A . E 4 HOH 125 2125 2125 HOH HOH A . E 4 HOH 126 2126 2126 HOH HOH A . E 4 HOH 127 2127 2127 HOH HOH A . E 4 HOH 128 2128 2128 HOH HOH A . E 4 HOH 129 2129 2129 HOH HOH A . E 4 HOH 130 2130 2130 HOH HOH A . E 4 HOH 131 2131 2131 HOH HOH A . E 4 HOH 132 2132 2132 HOH HOH A . E 4 HOH 133 2133 2133 HOH HOH A . E 4 HOH 134 2134 2134 HOH HOH A . E 4 HOH 135 2135 2135 HOH HOH A . E 4 HOH 136 2136 2136 HOH HOH A . E 4 HOH 137 2137 2137 HOH HOH A . E 4 HOH 138 2138 2138 HOH HOH A . E 4 HOH 139 2139 2139 HOH HOH A . E 4 HOH 140 2140 2140 HOH HOH A . E 4 HOH 141 2141 2141 HOH HOH A . E 4 HOH 142 2142 2142 HOH HOH A . E 4 HOH 143 2143 2143 HOH HOH A . E 4 HOH 144 2144 2144 HOH HOH A . E 4 HOH 145 2145 2145 HOH HOH A . E 4 HOH 146 2146 2146 HOH HOH A . E 4 HOH 147 2147 2147 HOH HOH A . E 4 HOH 148 2148 2148 HOH HOH A . E 4 HOH 149 2149 2149 HOH HOH A . E 4 HOH 150 2150 2150 HOH HOH A . E 4 HOH 151 2151 2151 HOH HOH A . E 4 HOH 152 2152 2152 HOH HOH A . E 4 HOH 153 2153 2153 HOH HOH A . E 4 HOH 154 2154 2154 HOH HOH A . E 4 HOH 155 2155 2155 HOH HOH A . E 4 HOH 156 2156 2156 HOH HOH A . E 4 HOH 157 2157 2157 HOH HOH A . E 4 HOH 158 2158 2158 HOH HOH A . E 4 HOH 159 2159 2159 HOH HOH A . E 4 HOH 160 2160 2160 HOH HOH A . E 4 HOH 161 2161 2161 HOH HOH A . E 4 HOH 162 2162 2162 HOH HOH A . E 4 HOH 163 2163 2163 HOH HOH A . E 4 HOH 164 2164 2164 HOH HOH A . E 4 HOH 165 2165 2165 HOH HOH A . E 4 HOH 166 2166 2166 HOH HOH A . E 4 HOH 167 2167 2167 HOH HOH A . E 4 HOH 168 2168 2168 HOH HOH A . E 4 HOH 169 2169 2169 HOH HOH A . E 4 HOH 170 2170 2170 HOH HOH A . E 4 HOH 171 2171 2171 HOH HOH A . E 4 HOH 172 2172 2172 HOH HOH A . E 4 HOH 173 2173 2173 HOH HOH A . E 4 HOH 174 2174 2174 HOH HOH A . E 4 HOH 175 2175 2175 HOH HOH A . E 4 HOH 176 2176 2176 HOH HOH A . E 4 HOH 177 2177 2177 HOH HOH A . E 4 HOH 178 2178 2178 HOH HOH A . E 4 HOH 179 2179 2179 HOH HOH A . E 4 HOH 180 2180 2180 HOH HOH A . E 4 HOH 181 2181 2181 HOH HOH A . E 4 HOH 182 2182 2182 HOH HOH A . E 4 HOH 183 2183 2183 HOH HOH A . E 4 HOH 184 2184 2184 HOH HOH A . E 4 HOH 185 2185 2185 HOH HOH A . E 4 HOH 186 2186 2186 HOH HOH A . E 4 HOH 187 2187 2187 HOH HOH A . E 4 HOH 188 2188 2188 HOH HOH A . E 4 HOH 189 2189 2189 HOH HOH A . E 4 HOH 190 2190 2190 HOH HOH A . E 4 HOH 191 2191 2191 HOH HOH A . E 4 HOH 192 2192 2192 HOH HOH A . E 4 HOH 193 2193 2193 HOH HOH A . E 4 HOH 194 2194 2194 HOH HOH A . E 4 HOH 195 2195 2195 HOH HOH A . E 4 HOH 196 2196 2196 HOH HOH A . E 4 HOH 197 2197 2197 HOH HOH A . E 4 HOH 198 2198 2198 HOH HOH A . E 4 HOH 199 2199 2199 HOH HOH A . E 4 HOH 200 2200 2200 HOH HOH A . E 4 HOH 201 2201 2201 HOH HOH A . E 4 HOH 202 2202 2202 HOH HOH A . E 4 HOH 203 2203 2203 HOH HOH A . E 4 HOH 204 2204 2204 HOH HOH A . E 4 HOH 205 2205 2205 HOH HOH A . E 4 HOH 206 2206 2206 HOH HOH A . E 4 HOH 207 2207 2207 HOH HOH A . E 4 HOH 208 2208 2208 HOH HOH A . E 4 HOH 209 2209 2209 HOH HOH A . E 4 HOH 210 2210 2210 HOH HOH A . E 4 HOH 211 2211 2211 HOH HOH A . E 4 HOH 212 2212 2212 HOH HOH A . E 4 HOH 213 2213 2213 HOH HOH A . E 4 HOH 214 2214 2214 HOH HOH A . E 4 HOH 215 2215 2215 HOH HOH A . E 4 HOH 216 2216 2216 HOH HOH A . E 4 HOH 217 2217 2217 HOH HOH A . E 4 HOH 218 2218 2218 HOH HOH A . E 4 HOH 219 2219 2219 HOH HOH A . E 4 HOH 220 2220 2220 HOH HOH A . E 4 HOH 221 2221 2221 HOH HOH A . E 4 HOH 222 2222 2222 HOH HOH A . E 4 HOH 223 2223 2223 HOH HOH A . E 4 HOH 224 2224 2224 HOH HOH A . E 4 HOH 225 2225 2225 HOH HOH A . E 4 HOH 226 2226 2226 HOH HOH A . E 4 HOH 227 2227 2227 HOH HOH A . E 4 HOH 228 2228 2228 HOH HOH A . E 4 HOH 229 2229 2229 HOH HOH A . E 4 HOH 230 2230 2230 HOH HOH A . E 4 HOH 231 2231 2231 HOH HOH A . E 4 HOH 232 2232 2232 HOH HOH A . E 4 HOH 233 2233 2233 HOH HOH A . E 4 HOH 234 2234 2234 HOH HOH A . E 4 HOH 235 2235 2235 HOH HOH A . E 4 HOH 236 2236 2236 HOH HOH A . E 4 HOH 237 2237 2237 HOH HOH A . E 4 HOH 238 2238 2238 HOH HOH A . E 4 HOH 239 2239 2239 HOH HOH A . E 4 HOH 240 2240 2240 HOH HOH A . E 4 HOH 241 2241 2241 HOH HOH A . E 4 HOH 242 2242 2242 HOH HOH A . E 4 HOH 243 2243 2243 HOH HOH A . E 4 HOH 244 2244 2244 HOH HOH A . E 4 HOH 245 2245 2245 HOH HOH A . E 4 HOH 246 2246 2246 HOH HOH A . E 4 HOH 247 2247 2247 HOH HOH A . E 4 HOH 248 2248 2248 HOH HOH A . E 4 HOH 249 2249 2249 HOH HOH A . E 4 HOH 250 2250 2250 HOH HOH A . E 4 HOH 251 2251 2251 HOH HOH A . E 4 HOH 252 2252 2252 HOH HOH A . E 4 HOH 253 2253 2253 HOH HOH A . E 4 HOH 254 2254 2254 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-02 2 'Structure model' 1 1 2013-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -11.7778 _pdbx_refine_tls.origin_y 3.4839 _pdbx_refine_tls.origin_z -8.9147 _pdbx_refine_tls.T[1][1] 0.0041 _pdbx_refine_tls.T[2][2] 0.0068 _pdbx_refine_tls.T[3][3] 0.0147 _pdbx_refine_tls.T[1][2] -0.0017 _pdbx_refine_tls.T[1][3] -0.0016 _pdbx_refine_tls.T[2][3] 0.0019 _pdbx_refine_tls.L[1][1] 0.0251 _pdbx_refine_tls.L[2][2] 0.3961 _pdbx_refine_tls.L[3][3] 0.4230 _pdbx_refine_tls.L[1][2] 0.0092 _pdbx_refine_tls.L[1][3] 0.0915 _pdbx_refine_tls.L[2][3] -0.0603 _pdbx_refine_tls.S[1][1] -0.0082 _pdbx_refine_tls.S[1][2] 0.0006 _pdbx_refine_tls.S[1][3] -0.0073 _pdbx_refine_tls.S[2][1] -0.0024 _pdbx_refine_tls.S[2][2] 0.0042 _pdbx_refine_tls.S[2][3] -0.0103 _pdbx_refine_tls.S[3][1] -0.0397 _pdbx_refine_tls.S[3][2] 0.0065 _pdbx_refine_tls.S[3][3] 0.0040 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 42 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 168 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # _software.name REFMAC _software.classification refinement _software.version 5.6.0117 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 52 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -161.81 _pdbx_validate_torsion.psi 94.15 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 2080 ? 5.86 . 2 1 O ? A HOH 2094 ? 6.42 . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '13-methyl-7-phenyl-3-thia-1,8,11,12-tetraazatricyclo trideca-2(6),4,7,10,12-pentaene' L5S 3 1,2-ETHANEDIOL EDO 4 water HOH #