HEADER SIGNALING PROTEIN 20-SEP-13 4C79 TITLE CRYSTAL STRUCTURE OF THE SMOOTHENED CRD, NATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMOOTHENED; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYSTEINE-RICH DOMAIN (CRD), RESIDUES 28-210; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.NACHTERGAELE,D.M.WHALEN,L.K.MYDOCK,Z.ZHAO,T.MALINAUSKAS,K.KRISHNAN, AUTHOR 2 P.W.INGHAM,D.F.COVEY,R.ROHATGI,C.SIEBOLD REVDAT 4 13-NOV-24 4C79 1 REMARK REVDAT 3 20-DEC-23 4C79 1 REMARK LINK REVDAT 2 13-NOV-13 4C79 1 JRNL REVDAT 1 06-NOV-13 4C79 0 JRNL AUTH S.NACHTERGAELE,D.M.WHALEN,L.K.MYDOCK,Z.ZHAO,T.MALINAUSKAS, JRNL AUTH 2 K.KRISHNAN,P.W.INGHAM,D.F.COVEY,C.SIEBOLD,R.ROHATGI JRNL TITL STRUCTURE AND FUNCTION OF THE SMOOTHENED EXTRACELLULAR JRNL TITL 2 DOMAIN IN VERTEBRATE HEDGEHOG SIGNALING JRNL REF ELIFE V. 2 01340 2013 JRNL REFN ESSN 2050-084X JRNL PMID 24171105 JRNL DOI 10.7554/ELIFE.01340 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 7275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2047 - 3.2802 0.99 3575 170 0.2013 0.2518 REMARK 3 2 3.2802 - 2.6041 0.98 3360 170 0.2424 0.2769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 29.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.00270 REMARK 3 B22 (A**2) : 2.00270 REMARK 3 B33 (A**2) : -4.00550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1946 REMARK 3 ANGLE : 0.714 2609 REMARK 3 CHIRALITY : 0.049 281 REMARK 3 PLANARITY : 0.003 338 REMARK 3 DIHEDRAL : 15.710 733 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 41:158) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2338 3.9941 -11.3394 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.1627 REMARK 3 T33: 0.2138 T12: 0.0067 REMARK 3 T13: -0.0110 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9686 L22: 1.6592 REMARK 3 L33: 0.6286 L12: 1.6713 REMARK 3 L13: -0.3005 L23: 0.5933 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: 0.0524 S13: -0.1721 REMARK 3 S21: 0.1313 S22: 0.0211 S23: -0.0903 REMARK 3 S31: 0.0191 S32: 0.0432 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 40:158) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0278 20.2427 13.5769 REMARK 3 T TENSOR REMARK 3 T11: 0.2101 T22: 0.1578 REMARK 3 T33: 0.1824 T12: -0.0549 REMARK 3 T13: -0.0182 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.4978 L22: 1.7810 REMARK 3 L33: 1.5406 L12: -0.2862 REMARK 3 L13: 0.2310 L23: 0.0040 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.2072 S13: 0.0961 REMARK 3 S21: 0.1363 S22: -0.1620 S23: 0.0905 REMARK 3 S31: 0.2641 S32: -0.0976 S33: -0.0785 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 41:157)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 41:157)) REMARK 3 ATOM PAIRS NUMBER : 234 REMARK 3 RMSD : 0.31 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7307 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 31.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4C7A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH7.0, PEG 6000 20%, 10 REMARK 280 MM ZNCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.51500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.31000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.27250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.31000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.75750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.27250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.75750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ILE A 30 REMARK 465 LEU A 31 REMARK 465 HIS A 32 REMARK 465 PRO A 33 REMARK 465 ASN A 34 REMARK 465 GLU A 35 REMARK 465 THR A 36 REMARK 465 ILE A 37 REMARK 465 PHE A 38 REMARK 465 ASN A 39 REMARK 465 ASP A 40 REMARK 465 ASN A 159 REMARK 465 GLU A 160 REMARK 465 VAL A 161 REMARK 465 GLN A 162 REMARK 465 LYS A 163 REMARK 465 LEU A 164 REMARK 465 LYS A 165 REMARK 465 PHE A 166 REMARK 465 ASN A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 GLN A 171 REMARK 465 CYS A 172 REMARK 465 GLU A 173 REMARK 465 ALA A 174 REMARK 465 PRO A 175 REMARK 465 LEU A 176 REMARK 465 VAL A 177 REMARK 465 LYS A 178 REMARK 465 THR A 179 REMARK 465 ASP A 180 REMARK 465 ILE A 181 REMARK 465 GLN A 182 REMARK 465 ALA A 183 REMARK 465 SER A 184 REMARK 465 TRP A 185 REMARK 465 TYR A 186 REMARK 465 LYS A 187 REMARK 465 ASP A 188 REMARK 465 VAL A 189 REMARK 465 GLU A 190 REMARK 465 GLY A 191 REMARK 465 CYS A 192 REMARK 465 GLY A 193 REMARK 465 ILE A 194 REMARK 465 GLN A 195 REMARK 465 CYS A 196 REMARK 465 ASP A 197 REMARK 465 ASN A 198 REMARK 465 PRO A 199 REMARK 465 LEU A 200 REMARK 465 PHE A 201 REMARK 465 THR A 202 REMARK 465 GLU A 203 REMARK 465 ASP A 204 REMARK 465 GLU A 205 REMARK 465 HIS A 206 REMARK 465 SER A 207 REMARK 465 ASP A 208 REMARK 465 MET A 209 REMARK 465 HIS A 210 REMARK 465 LYS A 211 REMARK 465 LEU A 212 REMARK 465 GLU A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 MET B 27 REMARK 465 ALA B 28 REMARK 465 VAL B 29 REMARK 465 ILE B 30 REMARK 465 LEU B 31 REMARK 465 HIS B 32 REMARK 465 PRO B 33 REMARK 465 ASN B 34 REMARK 465 GLU B 35 REMARK 465 THR B 36 REMARK 465 ILE B 37 REMARK 465 PHE B 38 REMARK 465 ASN B 39 REMARK 465 ASN B 159 REMARK 465 GLU B 160 REMARK 465 VAL B 161 REMARK 465 GLN B 162 REMARK 465 LYS B 163 REMARK 465 LEU B 164 REMARK 465 LYS B 165 REMARK 465 PHE B 166 REMARK 465 ASN B 167 REMARK 465 THR B 168 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 GLN B 171 REMARK 465 CYS B 172 REMARK 465 GLU B 173 REMARK 465 ALA B 174 REMARK 465 PRO B 175 REMARK 465 LEU B 176 REMARK 465 VAL B 177 REMARK 465 LYS B 178 REMARK 465 THR B 179 REMARK 465 ASP B 180 REMARK 465 ILE B 181 REMARK 465 GLN B 182 REMARK 465 ALA B 183 REMARK 465 SER B 184 REMARK 465 TRP B 185 REMARK 465 TYR B 186 REMARK 465 LYS B 187 REMARK 465 ASP B 188 REMARK 465 VAL B 189 REMARK 465 GLU B 190 REMARK 465 GLY B 191 REMARK 465 CYS B 192 REMARK 465 GLY B 193 REMARK 465 ILE B 194 REMARK 465 GLN B 195 REMARK 465 CYS B 196 REMARK 465 ASP B 197 REMARK 465 ASN B 198 REMARK 465 PRO B 199 REMARK 465 LEU B 200 REMARK 465 PHE B 201 REMARK 465 THR B 202 REMARK 465 GLU B 203 REMARK 465 ASP B 204 REMARK 465 GLU B 205 REMARK 465 HIS B 206 REMARK 465 SER B 207 REMARK 465 ASP B 208 REMARK 465 MET B 209 REMARK 465 HIS B 210 REMARK 465 LYS B 211 REMARK 465 LEU B 212 REMARK 465 GLU B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 139 -24.90 -144.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1159 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 NE2 REMARK 620 2 HOH A2012 O 86.2 REMARK 620 3 HIS B 65 NE2 118.7 84.4 REMARK 620 4 GLU B 75 OE1 149.1 113.3 88.0 REMARK 620 5 GLU B 75 OE2 127.9 65.7 102.0 51.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1160 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 68 O REMARK 620 2 ALA A 71 O 83.8 REMARK 620 3 SER A 74 O 108.7 82.6 REMARK 620 4 HOH A2014 O 88.0 171.5 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1159 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 68 O REMARK 620 2 ALA B 71 O 81.3 REMARK 620 3 SER B 74 O 93.1 67.9 REMARK 620 4 HOH B2011 O 86.5 166.2 106.4 REMARK 620 5 HOH B2012 O 102.1 87.9 149.2 101.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1159 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C7A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SMOOTHENED CRD, SELENOMETHIONINE -LABELED REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONSTRUCT CONTAINS ADDITIONAL N-TERMINAL (MA) AND C- REMARK 999 TERMINAL (KLEHHHHHH) RESIDUES. DBREF 4C79 A 28 210 UNP Q90X26 Q90X26_DANRE 28 210 DBREF 4C79 B 28 210 UNP Q90X26 Q90X26_DANRE 28 210 SEQADV 4C79 MET A 27 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 LYS A 211 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 LEU A 212 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 GLU A 213 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS A 214 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS A 215 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS A 216 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS A 217 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS A 218 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS A 219 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 MET B 27 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 LYS B 211 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 LEU B 212 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 GLU B 213 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS B 214 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS B 215 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS B 216 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS B 217 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS B 218 UNP Q90X26 EXPRESSION TAG SEQADV 4C79 HIS B 219 UNP Q90X26 EXPRESSION TAG SEQRES 1 A 193 MET ALA VAL ILE LEU HIS PRO ASN GLU THR ILE PHE ASN SEQRES 2 A 193 ASP PHE CYS LYS LYS SER THR THR CYS GLU VAL LEU LYS SEQRES 3 A 193 TYR ASN THR CYS LEU GLY SER PRO LEU PRO TYR THR HIS SEQRES 4 A 193 THR SER LEU ILE LEU ALA GLU ASP SER GLU THR GLN GLU SEQRES 5 A 193 GLU ALA PHE GLU LYS LEU ALA MET TRP SER GLY LEU ARG SEQRES 6 A 193 ASN ALA PRO ARG CYS TRP ALA VAL ILE GLN PRO LEU LEU SEQRES 7 A 193 CYS ALA VAL TYR MET PRO LYS CYS GLU ASN GLY LYS VAL SEQRES 8 A 193 GLU LEU PRO SER GLN HIS LEU CYS GLN ALA THR ARG ASN SEQRES 9 A 193 PRO CYS SER ILE VAL GLU ARG GLU ARG GLY TRP PRO ASN SEQRES 10 A 193 PHE LEU LYS CYS GLU ASN LYS GLU GLN PHE PRO LYS GLY SEQRES 11 A 193 CYS GLN ASN GLU VAL GLN LYS LEU LYS PHE ASN THR SER SEQRES 12 A 193 GLY GLN CYS GLU ALA PRO LEU VAL LYS THR ASP ILE GLN SEQRES 13 A 193 ALA SER TRP TYR LYS ASP VAL GLU GLY CYS GLY ILE GLN SEQRES 14 A 193 CYS ASP ASN PRO LEU PHE THR GLU ASP GLU HIS SER ASP SEQRES 15 A 193 MET HIS LYS LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 193 MET ALA VAL ILE LEU HIS PRO ASN GLU THR ILE PHE ASN SEQRES 2 B 193 ASP PHE CYS LYS LYS SER THR THR CYS GLU VAL LEU LYS SEQRES 3 B 193 TYR ASN THR CYS LEU GLY SER PRO LEU PRO TYR THR HIS SEQRES 4 B 193 THR SER LEU ILE LEU ALA GLU ASP SER GLU THR GLN GLU SEQRES 5 B 193 GLU ALA PHE GLU LYS LEU ALA MET TRP SER GLY LEU ARG SEQRES 6 B 193 ASN ALA PRO ARG CYS TRP ALA VAL ILE GLN PRO LEU LEU SEQRES 7 B 193 CYS ALA VAL TYR MET PRO LYS CYS GLU ASN GLY LYS VAL SEQRES 8 B 193 GLU LEU PRO SER GLN HIS LEU CYS GLN ALA THR ARG ASN SEQRES 9 B 193 PRO CYS SER ILE VAL GLU ARG GLU ARG GLY TRP PRO ASN SEQRES 10 B 193 PHE LEU LYS CYS GLU ASN LYS GLU GLN PHE PRO LYS GLY SEQRES 11 B 193 CYS GLN ASN GLU VAL GLN LYS LEU LYS PHE ASN THR SER SEQRES 12 B 193 GLY GLN CYS GLU ALA PRO LEU VAL LYS THR ASP ILE GLN SEQRES 13 B 193 ALA SER TRP TYR LYS ASP VAL GLU GLY CYS GLY ILE GLN SEQRES 14 B 193 CYS ASP ASN PRO LEU PHE THR GLU ASP GLU HIS SER ASP SEQRES 15 B 193 MET HIS LYS LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A1159 1 HET NA A1160 1 HET NA B1159 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 3 ZN ZN 2+ FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *48(H2 O) HELIX 1 1 THR A 76 TRP A 87 1 12 HELIX 2 2 SER A 88 ASN A 92 5 5 HELIX 3 3 ALA A 93 MET A 109 1 17 HELIX 4 4 SER A 121 ASN A 130 1 10 HELIX 5 5 SER A 133 ARG A 139 1 7 HELIX 6 6 PRO A 142 LYS A 146 5 5 HELIX 7 7 THR B 76 SER B 88 1 13 HELIX 8 8 GLY B 89 ASN B 92 5 4 HELIX 9 9 ALA B 93 MET B 109 1 17 HELIX 10 10 SER B 121 ALA B 127 1 7 HELIX 11 11 CYS B 132 ARG B 139 1 8 HELIX 12 12 PRO B 142 LYS B 146 5 5 SHEET 1 AA 3 LYS A 43 SER A 45 0 SHEET 2 AA 3 LYS A 116 GLU A 118 -1 O VAL A 117 N LYS A 44 SHEET 3 AA 3 CYS A 112 GLU A 113 -1 O GLU A 113 N LYS A 116 SHEET 1 AB 2 GLU A 49 VAL A 50 0 SHEET 2 AB 2 HIS A 65 THR A 66 -1 O THR A 66 N GLU A 49 SHEET 1 AC 2 THR A 55 CYS A 56 0 SHEET 2 AC 2 SER A 59 PRO A 60 -1 O SER A 59 N CYS A 56 SHEET 1 BA 3 LYS B 43 SER B 45 0 SHEET 2 BA 3 LYS B 116 GLU B 118 -1 O VAL B 117 N LYS B 44 SHEET 3 BA 3 CYS B 112 GLU B 113 -1 O GLU B 113 N LYS B 116 SHEET 1 BB 2 GLU B 49 VAL B 50 0 SHEET 2 BB 2 HIS B 65 THR B 66 -1 O THR B 66 N GLU B 49 SHEET 1 BC 2 THR B 55 CYS B 56 0 SHEET 2 BC 2 SER B 59 PRO B 60 -1 O SER B 59 N CYS B 56 SSBOND 1 CYS A 42 CYS A 157 1555 1555 2.03 SSBOND 2 CYS A 48 CYS A 112 1555 1555 2.03 SSBOND 3 CYS A 56 CYS A 105 1555 1555 2.03 SSBOND 4 CYS A 96 CYS A 132 1555 1555 2.03 SSBOND 5 CYS A 125 CYS A 147 1555 1555 2.04 SSBOND 6 CYS B 42 CYS B 157 1555 1555 2.03 SSBOND 7 CYS B 48 CYS B 112 1555 1555 2.03 SSBOND 8 CYS B 56 CYS B 105 1555 1555 2.03 SSBOND 9 CYS B 96 CYS B 132 1555 1555 2.03 SSBOND 10 CYS B 125 CYS B 147 1555 1555 2.04 LINK NE2 HIS A 65 ZN ZN A1159 1555 1555 1.99 LINK O LEU A 68 NA NA A1160 1555 1555 2.42 LINK O ALA A 71 NA NA A1160 1555 1555 2.41 LINK O SER A 74 NA NA A1160 1555 1555 2.35 LINK ZN ZN A1159 O HOH A2012 1555 1555 2.57 LINK ZN ZN A1159 NE2 HIS B 65 1555 7455 2.44 LINK ZN ZN A1159 OE1 GLU B 75 1555 5444 2.61 LINK ZN ZN A1159 OE2 GLU B 75 1555 5444 2.45 LINK NA NA A1160 O HOH A2014 1555 1555 2.38 LINK O LEU B 68 NA NA B1159 1555 1555 2.33 LINK O ALA B 71 NA NA B1159 1555 1555 2.41 LINK O SER B 74 NA NA B1159 1555 1555 2.42 LINK NA NA B1159 O HOH B2011 1555 1555 2.42 LINK NA NA B1159 O HOH B2012 1555 1555 2.42 SITE 1 AC1 4 HIS A 65 HOH A2012 HIS B 65 GLU B 75 SITE 1 AC2 4 LEU A 68 ALA A 71 SER A 74 HOH A2014 SITE 1 AC3 5 LEU B 68 ALA B 71 SER B 74 HOH B2011 SITE 2 AC3 5 HOH B2012 CRYST1 68.620 68.620 95.030 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014573 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010523 0.00000 MTRIX1 1 -0.055270 -0.949400 0.309200 0.30910 1 MTRIX2 1 -0.908300 -0.080770 -0.410400 2.81500 1 MTRIX3 1 0.414600 -0.303500 -0.857900 10.19000 1