HEADER RNA BINDING PROTEIN 24-SEP-13 4C7Q TITLE SOLUTION STRUCTURE OF THE NT. GR-RBP1 RRM DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING GLYCINE-RICH PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN, RESIDUES 1-85; COMPND 5 SYNONYM: GR-RBP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.KAHN,R.BOELENS,S.M.S.SAQLAN,H.VAN INGEN REVDAT 7 14-JUN-23 4C7Q 1 REMARK REVDAT 6 13-AUG-14 4C7Q 1 JRNL REVDAT 5 02-JUL-14 4C7Q 1 JRNL REVDAT 4 06-NOV-13 4C7Q 1 AUTHOR JRNL REVDAT 3 23-OCT-13 4C7Q 1 AUTHOR REVDAT 2 09-OCT-13 4C7Q 1 ATOM REVDAT 1 02-OCT-13 4C7Q 0 JRNL AUTH F.KHAN,R.BOELENS,S.M.S.NAQVI,H.VAN INGEN JRNL TITL STRUCTURAL BASIS OF NUCLEIC ACID BINDING BY NICOTIANA JRNL TITL 2 TABACUM GLYCINE-RICH RNA BINDING PROTEIN: IMPLICATIONS FOR JRNL TITL 3 ITS RNA CHAPERONE FUNCTION JRNL REF NUCLEIC ACIDS RES. V. 42 8705 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24957607 JRNL DOI 10.1093/NAR/GKU468 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD PROTOCOL REMARK 4 REMARK 4 4C7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058386. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS ANALYSIS REMARK 210 METHOD USED : CYANA CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STANDARD TRIPLE-RESONANCE PROCEDURE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H1 GLY A 0 OD1 ASP A 56 1.55 REMARK 500 OE1 GLU A 57 HZ1 LYS A 58 1.58 REMARK 500 H3 GLY A 0 OE2 GLU A 3 1.59 REMARK 500 OE2 GLU A 31 HZ3 LYS A 55 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 ARG A 7 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 8 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 10 ARG A 7 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 10 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 1 -49.37 -176.26 REMARK 500 1 ARG A 45 -164.81 -106.65 REMARK 500 1 GLN A 83 162.89 62.09 REMARK 500 2 ALA A 2 75.96 -157.45 REMARK 500 2 GLN A 83 -171.42 58.05 REMARK 500 3 MET A 1 2.38 -175.83 REMARK 500 3 GLN A 83 169.21 73.78 REMARK 500 4 MET A 1 62.51 68.31 REMARK 500 4 ALA A 2 119.39 -167.48 REMARK 500 4 GLU A 5 107.92 -55.03 REMARK 500 4 GLN A 83 128.71 70.35 REMARK 500 5 MET A 1 -71.78 73.93 REMARK 500 6 ALA A 2 84.01 64.72 REMARK 500 6 GLN A 83 -171.04 44.52 REMARK 500 7 MET A 1 4.65 -169.74 REMARK 500 7 ALA A 2 30.10 -151.14 REMARK 500 7 SER A 84 75.15 47.20 REMARK 500 8 ALA A 2 -45.69 -160.86 REMARK 500 8 GLU A 3 75.82 87.51 REMARK 500 8 VAL A 4 -166.10 -171.03 REMARK 500 8 ARG A 45 -155.27 -88.45 REMARK 500 8 GLN A 83 -167.22 51.50 REMARK 500 8 SER A 84 30.31 -81.79 REMARK 500 9 MET A 1 -58.40 -164.24 REMARK 500 9 ARG A 45 -159.11 -96.89 REMARK 500 10 MET A 1 -64.84 -107.79 REMARK 500 10 ALA A 2 72.42 -166.79 REMARK 500 10 ALA A 14 -168.64 -114.41 REMARK 500 10 ASP A 34 148.81 -170.05 REMARK 500 10 SER A 84 108.90 -53.34 REMARK 500 12 MET A 1 72.99 -164.92 REMARK 500 12 ALA A 2 79.30 60.28 REMARK 500 12 ASP A 34 147.26 -170.65 REMARK 500 12 ARG A 45 -164.94 -108.86 REMARK 500 12 GLN A 83 107.18 -36.10 REMARK 500 13 MET A 1 23.84 -149.59 REMARK 500 13 ALA A 2 89.11 -161.98 REMARK 500 13 GLN A 83 -69.02 66.80 REMARK 500 13 SER A 84 -95.96 -155.09 REMARK 500 14 ARG A 45 -159.12 -108.66 REMARK 500 14 GLN A 83 -170.27 64.12 REMARK 500 14 SER A 84 -151.06 61.41 REMARK 500 15 GLU A 3 75.98 62.23 REMARK 500 15 SER A 84 107.29 -59.59 REMARK 500 16 MET A 1 -43.80 175.96 REMARK 500 16 GLN A 83 -164.93 60.81 REMARK 500 17 MET A 1 -54.61 -176.19 REMARK 500 17 GLU A 3 58.52 -92.21 REMARK 500 17 ALA A 14 -167.33 -102.91 REMARK 500 17 ALA A 82 51.16 -92.81 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 61 0.08 SIDE CHAIN REMARK 500 4 ARG A 7 0.12 SIDE CHAIN REMARK 500 8 ARG A 47 0.11 SIDE CHAIN REMARK 500 11 ARG A 7 0.08 SIDE CHAIN REMARK 500 14 ARG A 75 0.10 SIDE CHAIN REMARK 500 17 ARG A 45 0.09 SIDE CHAIN REMARK 500 17 ARG A 75 0.10 SIDE CHAIN REMARK 500 18 ARG A 47 0.08 SIDE CHAIN REMARK 500 18 ARG A 61 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19525 RELATED DB: BMRB DBREF 4C7Q A 1 85 UNP D6PZY5 D6PZY5_TOBAC 1 85 SEQADV 4C7Q GLY A 0 UNP D6PZY5 EXPRESSION TAG SEQRES 1 A 86 GLY MET ALA GLU VAL GLU TYR ARG CYS PHE VAL GLY GLY SEQRES 2 A 86 LEU ALA TRP ALA THR THR ASP GLN THR LEU GLY GLU ALA SEQRES 3 A 86 PHE SER GLN PHE GLY GLU ILE LEU ASP SER LYS ILE ILE SEQRES 4 A 86 ASN ASP ARG GLU THR GLY ARG SER ARG GLY PHE GLY PHE SEQRES 5 A 86 VAL THR PHE LYS ASP GLU LYS ALA MET ARG ASP ALA ILE SEQRES 6 A 86 GLU GLY MET ASN GLY GLN ASP LEU ASP GLY ARG ASN ILE SEQRES 7 A 86 THR VAL ASN GLU ALA GLN SER ARG HELIX 1 1 THR A 18 GLN A 28 1 11 HELIX 2 2 ASP A 56 ASN A 68 1 13 SHEET 1 AA 4 ILE A 32 ASP A 40 0 SHEET 2 AA 4 ARG A 45 PHE A 54 -1 O ARG A 45 N ASP A 40 SHEET 3 AA 4 TYR A 6 GLY A 11 -1 O TYR A 6 N PHE A 54 SHEET 4 AA 4 THR A 78 GLU A 81 -1 O THR A 78 N GLY A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1