HEADER TRANSFERASE 26-SEP-13 4C7X TITLE THIAMINE PYROPHOSPHATE BOUND TRANSKETOLASE FROM LACTOBACILLUS TITLE 2 SALIVARIUS AT 2.2A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSKETOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.2.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS SALIVARIUS; SOURCE 3 ORGANISM_TAXID: 362948; SOURCE 4 STRAIN: UCC118; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POPINF KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.M.C.LOBLEY,P.LUKACIK,M.BUMANN,P.ALLER,A.DOUANGAMATH,P.W.O'TOOLE, AUTHOR 2 M.A.WALSH REVDAT 4 20-DEC-23 4C7X 1 REMARK LINK REVDAT 3 21-OCT-15 4C7X 1 JRNL REVDAT 2 14-OCT-15 4C7X 1 TITLE JRNL REVDAT 1 08-OCT-14 4C7X 0 JRNL AUTH P.LUKACIK,C.M.C.LOBLEY,M.BUMANN,V.ARENA DE SOUZA,R.J.OWENS, JRNL AUTH 2 P.W.O'TOOLE,M.A.WALSH JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF LACTOBACILLUS JRNL TITL 2 SALIVARIUS TRANSKETOLASE IN THE PRESENCE AND ABSENCE OF JRNL TITL 3 THIAMINE PYROPHOSPHATE JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 1327 2015 JRNL REFN ESSN 1744-3091 JRNL PMID 26457526 JRNL DOI 10.1107/S2053230X1501657X REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1479 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : -0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.474 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5260 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4945 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7132 ; 1.857 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11425 ; 0.895 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 669 ; 6.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;37.371 ;25.107 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 886 ;16.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.298 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 772 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6020 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1159 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2658 ; 2.214 ; 2.754 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2657 ; 2.214 ; 2.753 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3324 ; 3.044 ; 4.126 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3325 ; 3.044 ; 4.127 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2602 ; 2.861 ; 3.072 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2603 ; 2.861 ; 3.072 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3805 ; 4.318 ; 4.478 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6450 ; 5.554 ;22.688 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6399 ; 5.535 ;22.628 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3520 50.2590 -12.2220 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.0395 REMARK 3 T33: 0.0967 T12: 0.0020 REMARK 3 T13: -0.0119 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.3005 L22: 0.0576 REMARK 3 L33: 0.1242 L12: -0.0741 REMARK 3 L13: 0.0451 L23: -0.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0385 S13: -0.1028 REMARK 3 S21: -0.0137 S22: -0.0072 S23: 0.0665 REMARK 3 S31: -0.0083 S32: -0.0422 S33: 0.0029 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1010 61.8210 19.8060 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0462 REMARK 3 T33: 0.0597 T12: 0.0392 REMARK 3 T13: 0.0454 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4367 L22: 0.0899 REMARK 3 L33: 0.5133 L12: 0.1129 REMARK 3 L13: 0.1669 L23: 0.1625 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: -0.0852 S13: 0.0163 REMARK 3 S21: 0.0352 S22: -0.0097 S23: 0.0488 REMARK 3 S31: -0.0144 S32: -0.0453 S33: 0.0422 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 662 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8180 68.9520 12.6520 REMARK 3 T TENSOR REMARK 3 T11: 0.0324 T22: 0.0372 REMARK 3 T33: 0.0485 T12: 0.0105 REMARK 3 T13: -0.0009 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.2804 L22: 0.1785 REMARK 3 L33: 0.0965 L12: 0.0318 REMARK 3 L13: -0.0581 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: -0.0344 S13: 0.0062 REMARK 3 S21: 0.0250 S22: 0.0133 S23: 0.0138 REMARK 3 S31: -0.0371 S32: 0.0160 S33: 0.0025 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 701 A 701 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5840 48.0460 -14.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.1054 REMARK 3 T33: 0.1154 T12: 0.0074 REMARK 3 T13: -0.0015 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 17.8922 L22: 13.8246 REMARK 3 L33: 7.9199 L12: 15.7042 REMARK 3 L13: 11.8795 L23: 10.4384 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: -0.0666 S13: 0.2597 REMARK 3 S21: 0.0056 S22: -0.1052 S23: 0.2344 REMARK 3 S31: 0.0104 S32: -0.0401 S33: 0.1282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4C7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 53.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4C7V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% W/V PEG3350, 0.1 M SODIUM ACETATE, REMARK 280 0.1 M BIS-TRIS PROPANE PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 128.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.28333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.28333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 128.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2154 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ALA A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 GLU A -5 REMARK 465 VAL A -4 REMARK 465 LEU A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 LYS A 663 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 266 C - N - CA ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG A 357 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 492 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 492 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 54 -123.17 54.84 REMARK 500 PHE A 93 124.49 -34.92 REMARK 500 ASP A 149 98.98 -167.32 REMARK 500 SER A 199 -19.73 -144.90 REMARK 500 LEU A 300 -63.20 -98.11 REMARK 500 SER A 399 69.14 -150.78 REMARK 500 ILE A 476 -54.89 -133.56 REMARK 500 ASN A 549 -108.91 -125.28 REMARK 500 LYS A 574 3.06 -57.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 158 OD2 REMARK 620 2 ASN A 188 OD1 81.1 REMARK 620 3 ILE A 190 O 91.6 93.1 REMARK 620 4 TPP A 701 O1B 162.3 101.8 105.6 REMARK 620 5 TPP A 701 O2A 95.9 176.4 88.9 80.5 REMARK 620 6 HOH A2070 O 92.3 93.1 173.2 70.2 85.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C7V RELATED DB: PDB REMARK 900 APO TRANKSETOLASE FROM LACTOBACILLUS SALIVARIUS AT 2.2A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE HIS TAG (THE FIRST 18 RESIDUES ABOVE) IS NOT VISIBLE REMARK 999 IN THE ELECTRON DENSITY MAP DBREF 4C7X A 2 663 UNP Q1WQU8 Q1WQU8_LACS1 2 663 SEQADV 4C7X MET A -17 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X ALA A -16 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X HIS A -15 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X HIS A -14 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X HIS A -13 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X HIS A -12 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X HIS A -11 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X HIS A -10 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X SER A -9 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X SER A -8 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X GLY A -7 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X LEU A -6 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X GLU A -5 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X VAL A -4 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X LEU A -3 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X PHE A -2 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X GLN A -1 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X GLY A 0 UNP Q1WQU8 EXPRESSION TAG SEQADV 4C7X PRO A 1 UNP Q1WQU8 EXPRESSION TAG SEQRES 1 A 681 MET ALA HIS HIS HIS HIS HIS HIS SER SER GLY LEU GLU SEQRES 2 A 681 VAL LEU PHE GLN GLY PRO TYR ASP GLN VAL ASP GLN LEU SEQRES 3 A 681 GLY VAL ASN THR LEU ARG THR LEU SER ILE ASP ALA ILE SEQRES 4 A 681 GLN ARG ALA ASN SER GLY HIS PRO GLY LEU PRO MET GLY SEQRES 5 A 681 ALA ALA PRO MET ALA TYR VAL LEU TRP THR ARG HIS LEU SEQRES 6 A 681 LYS ILE ASN PRO LYS THR HIS MET ASN TRP VAL ASN ARG SEQRES 7 A 681 ASP ARG PHE VAL LEU SER ALA GLY HIS GLY SER ALA LEU SEQRES 8 A 681 LEU TYR SER LEU ALA HIS LEU ALA GLY TYR ASP VAL SER SEQRES 9 A 681 MET ASP ASP LEU LYS ASN PHE ARG GLU TRP LYS SER ASN SEQRES 10 A 681 THR PRO GLY HIS PRO GLU TYR GLY CYS THR ASP GLY VAL SEQRES 11 A 681 GLU ALA THR THR GLY PRO LEU GLY GLN GLY ILE SER MET SEQRES 12 A 681 ALA VAL GLY MET ALA MET ALA GLU ALA HIS LEU GLY LYS SEQRES 13 A 681 LYS PHE ASN ARG GLU GLY TYR PRO VAL MET ASP HIS TYR SEQRES 14 A 681 THR TYR ALA LEU ILE GLY ASP GLY ASP LEU MET GLU GLY SEQRES 15 A 681 VAL ALA SER GLU ALA ALA SER LEU ALA GLY HIS LEU LYS SEQRES 16 A 681 LEU GLY LYS LEU ILE ALA LEU TYR ASP SER ASN GLY ILE SEQRES 17 A 681 SER LEU ASP GLY LYS THR SER ALA SER PHE THR GLU ASN SEQRES 18 A 681 VAL GLY ALA ARG PHE GLU ALA TYR GLY TRP GLN TYR ILE SEQRES 19 A 681 LEU VAL GLU ASP GLY PHE ASN LEU GLU GLU ILE ASP LYS SEQRES 20 A 681 ALA ILE VAL GLN ALA LYS ALA GLU SER ASP LYS PRO THR SEQRES 21 A 681 ILE ILE GLU ILE LYS THR THR ILE GLY TYR GLY SER GLU SEQRES 22 A 681 ASN GLN GLY THR HIS LYS VAL HIS GLY SER PRO LEU GLY SEQRES 23 A 681 GLU GLU GLY VAL ALA HIS ALA LYS GLU VAL TYR ASN TRP SEQRES 24 A 681 ASN TYR PRO PRO PHE THR VAL PRO GLU GLU VAL SER GLN SEQRES 25 A 681 ARG PHE LYS GLU CYS LEU GLN ASP LYS GLY VAL LYS ALA SEQRES 26 A 681 GLU ASN LYS TRP ASN GLU MET PHE GLU ALA TYR LYS LYS SEQRES 27 A 681 GLU TYR SER ASP LEU ALA GLN LYS PHE SER ASP GLY PHE SEQRES 28 A 681 SER ASN LYS VAL PRO ASN THR LEU GLY ASP ILE LEU PRO SEQRES 29 A 681 GLN TYR GLY GLU ASP ASP SER ILE ALA THR ARG ALA ALA SEQRES 30 A 681 SER GLN LYS ALA ILE ASN ALA LEU ALA LYS GLU VAL SER SEQRES 31 A 681 SER LEU TRP GLY GLY ALA ALA ASP LEU ALA SER SER ASN SEQRES 32 A 681 LYS THR VAL ILE ALA GLY GLU GLY ASP PHE GLN PRO GLU SEQRES 33 A 681 SER TYR GLU GLY ARG ASN ILE TRP PHE GLY VAL ARG GLU SEQRES 34 A 681 PHE GLY MET ALA CYS ALA MET ASN GLY ILE MET LEU HIS SEQRES 35 A 681 GLY GLY THR ARG ILE PHE GLY SER THR PHE PHE VAL PHE SEQRES 36 A 681 SER ASP TYR LEU LYS ALA ALA ILE ARG LEU SER ALA ILE SEQRES 37 A 681 GLN LYS LEU PRO VAL ILE TYR VAL LEU THR HIS ASP SER SEQRES 38 A 681 VAL ALA VAL GLY LYS ASP GLY PRO THR HIS GLU PRO ILE SEQRES 39 A 681 GLU GLN LEU ALA SER LEU ARG THR ILE PRO ASN VAL GLN SEQRES 40 A 681 VAL PHE ARG PRO ALA ASP GLY ASN GLU THR SER ALA ALA SEQRES 41 A 681 TRP LYS VAL ALA LEU GLU THR LEU ASP LYS PRO THR ILE SEQRES 42 A 681 LEU VAL LEU SER ARG GLN ASN LEU ASP THR LEU PRO ILE SEQRES 43 A 681 SER LYS GLU LYS VAL PHE ASP GLY VAL GLU LYS GLY GLY SEQRES 44 A 681 TYR VAL VAL GLN GLY ALA GLU ASN GLU ALA ASP GLY ILE SEQRES 45 A 681 LEU ILE ALA THR GLY SER GLU VAL GLY LEU ALA LEU LYS SEQRES 46 A 681 ALA LYS GLU GLU LEU GLN LYS LYS GLY LYS ASP VAL ILE SEQRES 47 A 681 VAL VAL SER LEU PRO SER TRP GLU ARG PHE GLU ALA GLN SEQRES 48 A 681 SER GLU GLU TYR LYS ASN THR VAL ILE PRO PRO GLU LEU SEQRES 49 A 681 LYS LYS ARG MET THR ILE GLU ALA GLY THR THR TYR GLY SEQRES 50 A 681 TRP ALA LYS TYR ALA GLY ASP HIS GLY VAL MET ILE GLY SEQRES 51 A 681 ILE ASP GLU PHE GLY MET SER ALA PRO SER ASP ILE VAL SEQRES 52 A 681 LEU ARG GLU LEU GLY MET SER VAL GLU ASN ILE VAL ASP SEQRES 53 A 681 LYS TYR LEU GLU LYS HET MG A 700 1 HET TPP A 701 26 HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 4 HOH *225(H2 O) HELIX 1 1 ASP A 3 ASN A 25 1 23 HELIX 2 2 PRO A 29 HIS A 46 1 18 HELIX 3 3 ASN A 50 HIS A 54 5 5 HELIX 4 4 ALA A 67 HIS A 69 5 3 HELIX 5 5 GLY A 70 GLY A 82 1 13 HELIX 6 6 SER A 86 LYS A 91 1 6 HELIX 7 7 GLY A 120 ASN A 141 1 22 HELIX 8 8 GLY A 157 GLU A 163 1 7 HELIX 9 9 GLU A 163 LEU A 176 1 14 HELIX 10 10 THR A 196 SER A 199 5 4 HELIX 11 11 ASN A 203 GLY A 212 1 10 HELIX 12 12 ASN A 223 GLU A 237 1 15 HELIX 13 13 THR A 259 HIS A 263 5 5 HELIX 14 14 GLY A 268 TYR A 279 1 12 HELIX 15 15 PRO A 289 LEU A 300 1 12 HELIX 16 16 LEU A 300 TYR A 322 1 23 HELIX 17 17 TYR A 322 ASN A 335 1 14 HELIX 18 18 THR A 340 LEU A 345 1 6 HELIX 19 19 THR A 356 VAL A 371 1 16 HELIX 20 20 LEU A 381 LYS A 386 1 6 HELIX 21 21 ARG A 410 GLY A 425 1 16 HELIX 22 22 PHE A 437 GLN A 451 1 15 HELIX 23 23 SER A 463 GLY A 467 5 5 HELIX 24 24 GLY A 470 GLU A 474 5 5 HELIX 25 25 GLU A 477 THR A 484 1 8 HELIX 26 26 ASP A 495 THR A 509 1 15 HELIX 27 27 SER A 529 GLY A 540 1 12 HELIX 28 28 GLY A 559 LYS A 574 1 16 HELIX 29 29 SER A 586 ALA A 592 1 7 HELIX 30 30 SER A 594 ILE A 602 1 9 HELIX 31 31 TRP A 620 GLY A 625 1 6 HELIX 32 32 PRO A 641 LEU A 649 1 9 HELIX 33 33 SER A 652 GLU A 662 1 11 SHEET 1 AA 5 ARG A 62 LEU A 65 0 SHEET 2 AA 5 THR A 152 ILE A 156 1 O TYR A 153 N VAL A 64 SHEET 3 AA 5 LEU A 181 SER A 187 1 O ILE A 182 N ALA A 154 SHEET 4 AA 5 THR A 242 LYS A 247 1 O THR A 242 N ALA A 183 SHEET 5 AA 5 GLN A 214 VAL A 218 1 O GLN A 214 N ILE A 243 SHEET 1 AB 2 SER A 353 ALA A 355 0 SHEET 2 AB 2 ASN A 522 ASP A 524 -1 O LEU A 523 N ILE A 354 SHEET 1 AC 6 ASN A 404 TRP A 406 0 SHEET 2 AC 6 LEU A 374 ALA A 378 1 O GLY A 376 N ILE A 405 SHEET 3 AC 6 ARG A 428 PHE A 434 1 O ARG A 428 N TRP A 375 SHEET 4 AC 6 ILE A 456 THR A 460 1 O ILE A 456 N GLY A 431 SHEET 5 AC 6 THR A 514 VAL A 517 1 O THR A 514 N TYR A 457 SHEET 6 AC 6 GLN A 489 PHE A 491 1 O GLN A 489 N ILE A 515 SHEET 1 AD 5 TYR A 542 GLN A 545 0 SHEET 2 AD 5 VAL A 579 SER A 583 -1 O VAL A 581 N VAL A 544 SHEET 3 AD 5 GLY A 553 ALA A 557 1 O GLY A 553 N ILE A 580 SHEET 4 AD 5 ARG A 609 ILE A 612 1 O MET A 610 N ILE A 556 SHEET 5 AD 5 VAL A 629 ILE A 631 1 O VAL A 629 N THR A 611 LINK OD2 ASP A 158 MG MG A 700 1555 1555 2.16 LINK OD1 ASN A 188 MG MG A 700 1555 1555 2.21 LINK O ILE A 190 MG MG A 700 1555 1555 1.86 LINK MG MG A 700 O1B TPP A 701 1555 1555 1.95 LINK MG MG A 700 O2A TPP A 701 1555 1555 2.06 LINK MG MG A 700 O HOH A2070 1555 1555 2.24 SITE 1 AC1 5 ASP A 158 ASN A 188 ILE A 190 TPP A 701 SITE 2 AC1 5 HOH A2070 SITE 1 AC2 23 LEU A 31 HIS A 69 GLY A 117 LEU A 119 SITE 2 AC2 23 ASP A 158 GLY A 159 GLU A 163 ASN A 188 SITE 3 AC2 23 ILE A 190 SER A 191 ILE A 250 HIS A 263 SITE 4 AC2 23 ASP A 380 GLU A 411 PHE A 437 TYR A 440 SITE 5 AC2 23 HIS A 473 MG A 700 HOH A2016 HOH A2053 SITE 6 AC2 23 HOH A2069 HOH A2070 HOH A2087 CRYST1 74.990 74.990 192.850 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013335 0.007699 0.000000 0.00000 SCALE2 0.000000 0.015398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005185 0.00000