data_4C8W # _entry.id 4C8W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4C8W PDBE EBI-58586 WWPDB D_1290058586 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4C84 unspecified 'ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM I' PDB 4C85 unspecified 'ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM II' PDB 4C86 unspecified 'MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM I' PDB 4C8A unspecified 'MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM II' PDB 4C8C unspecified 'MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM III' PDB 4C8F unspecified 'MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM IV' PDB 4C8P unspecified 'MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM V, DISULFIDE-BRIDGED S90C VARIANT' PDB 4C8T unspecified 'XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM I' PDB 4C8U unspecified 'XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM II' PDB 4C8V unspecified 'XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I' PDB 4C99 unspecified 'MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH MOUSE RSPO2 FU1 -FU2 CRYSTAL FORM I' PDB 4C9A unspecified 'MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 (SELENO MET) CRYSTAL FORM I' PDB 4C9E unspecified 'MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 (SELENO MET) CRYSTAL FORM II' PDB 4C9R unspecified 'XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I' PDB 4C9U unspecified 'XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM II' PDB 4C9V unspecified 'XENOPUS RNF43 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4C8W _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-10-01 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zebisch, M.' 1 'Jones, E.Y.' 2 # _citation.id primary _citation.title 'Structural and Molecular Basis of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition by the Wnt Agonist R-Spondin.' _citation.journal_abbrev Nat.Commun. _citation.journal_volume 4 _citation.page_first 2787 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24225776 _citation.pdbx_database_id_DOI 10.1038/NCOMMS3787 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zebisch, M.' 1 primary 'Xu, Y.' 2 primary 'Krastev, C.' 3 primary 'Macdonald, B.T.' 4 primary 'Chen, M.' 5 primary 'Gilbert, R.J.C.' 6 primary 'He, X.' 7 primary 'Jones, E.Y.' 8 # _cell.entry_id 4C8W _cell.length_a 87.122 _cell.length_b 87.122 _cell.length_c 76.951 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C8W _symmetry.space_group_name_H-M 'P 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 89 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description R-SPONDIN-2 _entity.formula_weight 13781.749 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'FU1-FU2, RESIDUES 35-144' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ROOF PLATE-SPECIFIC SPONDIN-2, RSPO2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ETGGTNPICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCI KCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDGTKHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ETGGTNPICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCI KCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDGTKHHHHHH ; _entity_poly.pdbx_strand_id I,J _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 GLY n 1 4 GLY n 1 5 THR n 1 6 ASN n 1 7 PRO n 1 8 ILE n 1 9 CYS n 1 10 LYS n 1 11 GLY n 1 12 CYS n 1 13 LEU n 1 14 SER n 1 15 CYS n 1 16 SER n 1 17 LYS n 1 18 ASP n 1 19 ASN n 1 20 GLY n 1 21 CYS n 1 22 LEU n 1 23 ARG n 1 24 CYS n 1 25 GLN n 1 26 PRO n 1 27 LYS n 1 28 LEU n 1 29 PHE n 1 30 PHE n 1 31 TYR n 1 32 LEU n 1 33 ARG n 1 34 ARG n 1 35 GLU n 1 36 GLY n 1 37 MET n 1 38 ARG n 1 39 GLN n 1 40 TYR n 1 41 GLY n 1 42 GLU n 1 43 CYS n 1 44 LEU n 1 45 GLN n 1 46 SER n 1 47 CYS n 1 48 PRO n 1 49 PRO n 1 50 GLY n 1 51 TYR n 1 52 TYR n 1 53 GLY n 1 54 VAL n 1 55 ARG n 1 56 GLY n 1 57 PRO n 1 58 ASP n 1 59 MET n 1 60 ASN n 1 61 ARG n 1 62 CYS n 1 63 SER n 1 64 ARG n 1 65 CYS n 1 66 ARG n 1 67 ILE n 1 68 GLU n 1 69 ASN n 1 70 CYS n 1 71 ASP n 1 72 SER n 1 73 CYS n 1 74 PHE n 1 75 SER n 1 76 ARG n 1 77 ASP n 1 78 PHE n 1 79 CYS n 1 80 ILE n 1 81 LYS n 1 82 CYS n 1 83 LYS n 1 84 SER n 1 85 GLY n 1 86 PHE n 1 87 TYR n 1 88 SER n 1 89 HIS n 1 90 LYS n 1 91 GLY n 1 92 GLN n 1 93 CYS n 1 94 PHE n 1 95 GLU n 1 96 GLU n 1 97 CYS n 1 98 PRO n 1 99 GLU n 1 100 GLY n 1 101 PHE n 1 102 ALA n 1 103 PRO n 1 104 LEU n 1 105 ASP n 1 106 ASP n 1 107 THR n 1 108 MET n 1 109 VAL n 1 110 CYS n 1 111 VAL n 1 112 ASP n 1 113 GLY n 1 114 THR n 1 115 LYS n 1 116 HIS n 1 117 HIS n 1 118 HIS n 1 119 HIS n 1 120 HIS n 1 121 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'WESTERN CLAWED FROG' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'XENOPUS (SILURANA) TROPICALIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8364 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name HUMAN _entity_src_gen.pdbx_host_org_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293T _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector TRANSIENT _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PHLSEC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RSPO2_XENTR _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q5M7L6 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4C8W I 4 ? 113 ? Q5M7L6 35 ? 144 ? 35 144 2 1 4C8W J 4 ? 113 ? Q5M7L6 35 ? 144 ? 35 144 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4C8W GLU I 1 ? UNP Q5M7L6 ? ? 'expression tag' 32 1 1 4C8W THR I 2 ? UNP Q5M7L6 ? ? 'expression tag' 33 2 1 4C8W GLY I 3 ? UNP Q5M7L6 ? ? 'expression tag' 34 3 1 4C8W THR I 114 ? UNP Q5M7L6 ? ? 'expression tag' 145 4 1 4C8W LYS I 115 ? UNP Q5M7L6 ? ? 'expression tag' 146 5 1 4C8W HIS I 116 ? UNP Q5M7L6 ? ? 'expression tag' 147 6 1 4C8W HIS I 117 ? UNP Q5M7L6 ? ? 'expression tag' 148 7 1 4C8W HIS I 118 ? UNP Q5M7L6 ? ? 'expression tag' 149 8 1 4C8W HIS I 119 ? UNP Q5M7L6 ? ? 'expression tag' 150 9 1 4C8W HIS I 120 ? UNP Q5M7L6 ? ? 'expression tag' 151 10 1 4C8W HIS I 121 ? UNP Q5M7L6 ? ? 'expression tag' 152 11 2 4C8W GLU J 1 ? UNP Q5M7L6 ? ? 'expression tag' 32 12 2 4C8W THR J 2 ? UNP Q5M7L6 ? ? 'expression tag' 33 13 2 4C8W GLY J 3 ? UNP Q5M7L6 ? ? 'expression tag' 34 14 2 4C8W THR J 114 ? UNP Q5M7L6 ? ? 'expression tag' 145 15 2 4C8W LYS J 115 ? UNP Q5M7L6 ? ? 'expression tag' 146 16 2 4C8W HIS J 116 ? UNP Q5M7L6 ? ? 'expression tag' 147 17 2 4C8W HIS J 117 ? UNP Q5M7L6 ? ? 'expression tag' 148 18 2 4C8W HIS J 118 ? UNP Q5M7L6 ? ? 'expression tag' 149 19 2 4C8W HIS J 119 ? UNP Q5M7L6 ? ? 'expression tag' 150 20 2 4C8W HIS J 120 ? UNP Q5M7L6 ? ? 'expression tag' 151 21 2 4C8W HIS J 121 ? UNP Q5M7L6 ? ? 'expression tag' 152 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4C8W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 53.56 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PIXEL' _diffrn_detector.pdbx_collection_date 2012-05-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4C8W _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 87.00 _reflns.d_resolution_high 3.10 _reflns.number_obs 5686 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.19 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 6.80 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4C8W _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5423 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 87.12 _refine.ls_d_res_high 3.10 _refine.ls_percent_reflns_obs 98.42 _refine.ls_R_factor_obs 0.23360 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22978 _refine.ls_R_factor_R_free 0.31284 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 262 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.885 _refine.correlation_coeff_Fo_to_Fc_free 0.837 _refine.B_iso_mean 57.287 _refine.aniso_B[1][1] -1.31 _refine.aniso_B[2][2] -1.31 _refine.aniso_B[3][3] 2.62 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.529 _refine.overall_SU_ML 0.403 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 23.074 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1549 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1549 _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 87.12 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.019 ? 1601 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1399 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.369 1.967 ? 2162 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.828 3.020 ? 3197 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.777 5.000 ? 206 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.993 22.941 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.471 15.000 ? 247 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.961 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 213 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1849 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 382 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.100 _refine_ls_shell.d_res_low 3.181 _refine_ls_shell.number_reflns_R_work 394 _refine_ls_shell.R_factor_R_work 0.280 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.316 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 20 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4C8W _struct.title 'Xenopus RSPO2 Fu1-Fu2 crystal form II' _struct.pdbx_descriptor R-SPONDIN-2 _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4C8W _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'SIGNALING PROTEIN, WNT, ZNRF3, RNF43, LGR4, LGR5, LGR6, RSPO, R-SPO, RSPO1, RSPO3, RSPO4, RECEPTOR, MEMBRANE, SIGNALLING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 15 SG ? ? I CYS 40 I CYS 46 1_555 ? ? ? ? ? ? ? 2.050 ? disulf2 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 21 SG ? ? I CYS 43 I CYS 52 1_555 ? ? ? ? ? ? ? 2.060 ? disulf3 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 43 SG ? ? I CYS 55 I CYS 74 1_555 ? ? ? ? ? ? ? 2.049 ? disulf4 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 62 SG ? ? I CYS 78 I CYS 93 1_555 ? ? ? ? ? ? ? 2.068 ? disulf5 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 73 SG ? ? I CYS 96 I CYS 104 1_555 ? ? ? ? ? ? ? 2.057 ? disulf6 disulf ? ? A CYS 70 SG ? ? ? 1_555 A CYS 79 SG ? ? I CYS 101 I CYS 110 1_555 ? ? ? ? ? ? ? 2.038 ? disulf7 disulf ? ? A CYS 82 SG ? ? ? 1_555 A CYS 93 SG ? ? I CYS 113 I CYS 124 1_555 ? ? ? ? ? ? ? 2.034 ? disulf8 disulf ? ? A CYS 97 SG ? ? ? 1_555 A CYS 110 SG ? ? I CYS 128 I CYS 141 1_555 ? ? ? ? ? ? ? 2.040 ? disulf9 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 15 SG ? ? J CYS 40 J CYS 46 1_555 ? ? ? ? ? ? ? 2.025 ? disulf10 disulf ? ? B CYS 12 SG ? ? ? 1_555 B CYS 21 SG ? ? J CYS 43 J CYS 52 1_555 ? ? ? ? ? ? ? 2.046 ? disulf11 disulf ? ? B CYS 24 SG ? ? ? 1_555 B CYS 43 SG ? ? J CYS 55 J CYS 74 1_555 ? ? ? ? ? ? ? 2.031 ? disulf12 disulf ? ? B CYS 47 SG ? ? ? 1_555 B CYS 62 SG ? ? J CYS 78 J CYS 93 1_555 ? ? ? ? ? ? ? 2.041 ? disulf13 disulf ? ? B CYS 65 SG ? ? ? 1_555 B CYS 73 SG ? ? J CYS 96 J CYS 104 1_555 ? ? ? ? ? ? ? 2.046 ? disulf14 disulf ? ? B CYS 70 SG ? ? ? 1_555 B CYS 79 SG ? ? J CYS 101 J CYS 110 1_555 ? ? ? ? ? ? ? 2.056 ? disulf15 disulf ? ? B CYS 82 SG ? ? ? 1_555 B CYS 93 SG ? ? J CYS 113 J CYS 124 1_555 ? ? ? ? ? ? ? 2.056 ? disulf16 disulf ? ? B CYS 97 SG ? ? ? 1_555 B CYS 110 SG ? ? J CYS 128 J CYS 141 1_555 ? ? ? ? ? ? ? 2.068 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details IA ? 2 ? IB ? 4 ? IC ? 2 ? ID ? 2 ? JA ? 2 ? JB ? 4 ? JC ? 2 ? JD ? 2 ? JE ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense IA 1 2 ? anti-parallel IB 1 2 ? anti-parallel IB 2 3 ? parallel IB 3 4 ? anti-parallel IC 1 2 ? anti-parallel ID 1 2 ? anti-parallel JA 1 2 ? anti-parallel JB 1 2 ? anti-parallel JB 2 3 ? parallel JB 3 4 ? anti-parallel JC 1 2 ? anti-parallel JD 1 2 ? anti-parallel JE 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id IA 1 CYS A 12 ? SER A 16 ? CYS I 43 SER I 47 IA 2 GLY A 20 ? CYS A 24 ? GLY I 51 CYS I 55 IB 1 GLN A 39 ? LEU A 44 ? GLN I 70 LEU I 75 IB 2 PHE A 29 ? ARG A 34 ? PHE I 60 ARG I 65 IB 3 ASN A 60 ? ARG A 64 ? ASN I 91 ARG I 95 IB 4 TYR A 51 ? ARG A 55 ? TYR I 82 ARG I 86 IC 1 CYS A 70 ? SER A 75 ? CYS I 101 SER I 106 IC 2 PHE A 78 ? CYS A 82 ? PHE I 109 CYS I 113 ID 1 TYR A 87 ? HIS A 89 ? TYR I 118 HIS I 120 ID 2 GLN A 92 ? PHE A 94 ? GLN I 123 PHE I 125 JA 1 CYS B 15 ? SER B 16 ? CYS J 46 SER J 47 JA 2 GLY B 20 ? CYS B 21 ? GLY J 51 CYS J 52 JB 1 ARG B 38 ? LEU B 44 ? ARG J 69 LEU J 75 JB 2 PHE B 29 ? GLU B 35 ? PHE J 60 GLU J 66 JB 3 ASN B 60 ? ARG B 64 ? ASN J 91 ARG J 95 JB 4 TYR B 51 ? ARG B 55 ? TYR J 82 ARG J 86 JC 1 CYS B 70 ? SER B 75 ? CYS J 101 SER J 106 JC 2 PHE B 78 ? CYS B 82 ? PHE J 109 CYS J 113 JD 1 TYR B 87 ? HIS B 89 ? TYR J 118 HIS J 120 JD 2 GLN B 92 ? PHE B 94 ? GLN J 123 PHE J 125 JE 1 ALA B 102 ? PRO B 103 ? ALA J 133 PRO J 134 JE 2 CYS B 110 ? VAL B 111 ? CYS J 141 VAL J 142 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id IA 1 2 N SER A 16 ? N SER I 47 O GLY A 20 ? O GLY I 51 IB 1 2 N LEU A 44 ? N LEU I 75 O PHE A 29 ? O PHE I 60 IB 2 3 N PHE A 30 ? N PHE I 61 O ASN A 60 ? O ASN I 91 IB 3 4 N SER A 63 ? N SER I 94 O TYR A 52 ? O TYR I 83 IC 1 2 N PHE A 74 ? N PHE I 105 O PHE A 78 ? O PHE I 109 ID 1 2 N HIS A 89 ? N HIS I 120 O GLN A 92 ? O GLN I 123 JA 1 2 N SER B 16 ? N SER J 47 O GLY B 20 ? O GLY J 51 JB 1 2 N LEU B 44 ? N LEU J 75 O PHE B 29 ? O PHE J 60 JB 2 3 N PHE B 30 ? N PHE J 61 O ASN B 60 ? O ASN J 91 JB 3 4 N SER B 63 ? N SER J 94 O TYR B 52 ? O TYR J 83 JC 1 2 N PHE B 74 ? N PHE J 105 O PHE B 78 ? O PHE J 109 JD 1 2 N HIS B 89 ? N HIS J 120 O GLN B 92 ? O GLN J 123 JE 1 2 N ALA B 102 ? N ALA J 133 O VAL B 111 ? O VAL J 142 # _database_PDB_matrix.entry_id 4C8W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4C8W _atom_sites.fract_transf_matrix[1][1] 0.011478 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011478 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012995 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 32 ? ? ? I . n A 1 2 THR 2 33 ? ? ? I . n A 1 3 GLY 3 34 ? ? ? I . n A 1 4 GLY 4 35 ? ? ? I . n A 1 5 THR 5 36 ? ? ? I . n A 1 6 ASN 6 37 ? ? ? I . n A 1 7 PRO 7 38 ? ? ? I . n A 1 8 ILE 8 39 39 ILE ILE I . n A 1 9 CYS 9 40 40 CYS CYS I . n A 1 10 LYS 10 41 41 LYS LYS I . n A 1 11 GLY 11 42 42 GLY GLY I . n A 1 12 CYS 12 43 43 CYS CYS I . n A 1 13 LEU 13 44 44 LEU LEU I . n A 1 14 SER 14 45 45 SER SER I . n A 1 15 CYS 15 46 46 CYS CYS I . n A 1 16 SER 16 47 47 SER SER I . n A 1 17 LYS 17 48 48 LYS LYS I . n A 1 18 ASP 18 49 49 ASP ASP I . n A 1 19 ASN 19 50 50 ASN ASN I . n A 1 20 GLY 20 51 51 GLY GLY I . n A 1 21 CYS 21 52 52 CYS CYS I . n A 1 22 LEU 22 53 53 LEU LEU I . n A 1 23 ARG 23 54 54 ARG ARG I . n A 1 24 CYS 24 55 55 CYS CYS I . n A 1 25 GLN 25 56 56 GLN GLN I . n A 1 26 PRO 26 57 57 PRO PRO I . n A 1 27 LYS 27 58 58 LYS LYS I . n A 1 28 LEU 28 59 59 LEU LEU I . n A 1 29 PHE 29 60 60 PHE PHE I . n A 1 30 PHE 30 61 61 PHE PHE I . n A 1 31 TYR 31 62 62 TYR TYR I . n A 1 32 LEU 32 63 63 LEU LEU I . n A 1 33 ARG 33 64 64 ARG ARG I . n A 1 34 ARG 34 65 65 ARG ARG I . n A 1 35 GLU 35 66 66 GLU GLU I . n A 1 36 GLY 36 67 67 GLY GLY I . n A 1 37 MET 37 68 68 MET MET I . n A 1 38 ARG 38 69 69 ARG ARG I . n A 1 39 GLN 39 70 70 GLN GLN I . n A 1 40 TYR 40 71 71 TYR TYR I . n A 1 41 GLY 41 72 72 GLY GLY I . n A 1 42 GLU 42 73 73 GLU GLU I . n A 1 43 CYS 43 74 74 CYS CYS I . n A 1 44 LEU 44 75 75 LEU LEU I . n A 1 45 GLN 45 76 76 GLN GLN I . n A 1 46 SER 46 77 77 SER SER I . n A 1 47 CYS 47 78 78 CYS CYS I . n A 1 48 PRO 48 79 79 PRO PRO I . n A 1 49 PRO 49 80 80 PRO PRO I . n A 1 50 GLY 50 81 81 GLY GLY I . n A 1 51 TYR 51 82 82 TYR TYR I . n A 1 52 TYR 52 83 83 TYR TYR I . n A 1 53 GLY 53 84 84 GLY GLY I . n A 1 54 VAL 54 85 85 VAL VAL I . n A 1 55 ARG 55 86 86 ARG ARG I . n A 1 56 GLY 56 87 87 GLY GLY I . n A 1 57 PRO 57 88 88 PRO PRO I . n A 1 58 ASP 58 89 89 ASP ASP I . n A 1 59 MET 59 90 90 MET MET I . n A 1 60 ASN 60 91 91 ASN ASN I . n A 1 61 ARG 61 92 92 ARG ARG I . n A 1 62 CYS 62 93 93 CYS CYS I . n A 1 63 SER 63 94 94 SER SER I . n A 1 64 ARG 64 95 95 ARG ARG I . n A 1 65 CYS 65 96 96 CYS CYS I . n A 1 66 ARG 66 97 97 ARG ARG I . n A 1 67 ILE 67 98 98 ILE ILE I . n A 1 68 GLU 68 99 99 GLU GLU I . n A 1 69 ASN 69 100 100 ASN ASN I . n A 1 70 CYS 70 101 101 CYS CYS I . n A 1 71 ASP 71 102 102 ASP ASP I . n A 1 72 SER 72 103 103 SER SER I . n A 1 73 CYS 73 104 104 CYS CYS I . n A 1 74 PHE 74 105 105 PHE PHE I . n A 1 75 SER 75 106 106 SER SER I . n A 1 76 ARG 76 107 107 ARG ARG I . n A 1 77 ASP 77 108 108 ASP ASP I . n A 1 78 PHE 78 109 109 PHE PHE I . n A 1 79 CYS 79 110 110 CYS CYS I . n A 1 80 ILE 80 111 111 ILE ILE I . n A 1 81 LYS 81 112 112 LYS LYS I . n A 1 82 CYS 82 113 113 CYS CYS I . n A 1 83 LYS 83 114 114 LYS LYS I . n A 1 84 SER 84 115 115 SER SER I . n A 1 85 GLY 85 116 116 GLY GLY I . n A 1 86 PHE 86 117 117 PHE PHE I . n A 1 87 TYR 87 118 118 TYR TYR I . n A 1 88 SER 88 119 119 SER SER I . n A 1 89 HIS 89 120 120 HIS HIS I . n A 1 90 LYS 90 121 121 LYS LYS I . n A 1 91 GLY 91 122 122 GLY GLY I . n A 1 92 GLN 92 123 123 GLN GLN I . n A 1 93 CYS 93 124 124 CYS CYS I . n A 1 94 PHE 94 125 125 PHE PHE I . n A 1 95 GLU 95 126 126 GLU GLU I . n A 1 96 GLU 96 127 127 GLU GLU I . n A 1 97 CYS 97 128 128 CYS CYS I . n A 1 98 PRO 98 129 129 PRO PRO I . n A 1 99 GLU 99 130 130 GLU GLU I . n A 1 100 GLY 100 131 131 GLY GLY I . n A 1 101 PHE 101 132 132 PHE PHE I . n A 1 102 ALA 102 133 133 ALA ALA I . n A 1 103 PRO 103 134 134 PRO PRO I . n A 1 104 LEU 104 135 135 LEU LEU I . n A 1 105 ASP 105 136 136 ASP ASP I . n A 1 106 ASP 106 137 137 ASP ASP I . n A 1 107 THR 107 138 138 THR THR I . n A 1 108 MET 108 139 139 MET MET I . n A 1 109 VAL 109 140 140 VAL VAL I . n A 1 110 CYS 110 141 141 CYS CYS I . n A 1 111 VAL 111 142 142 VAL VAL I . n A 1 112 ASP 112 143 ? ? ? I . n A 1 113 GLY 113 144 ? ? ? I . n A 1 114 THR 114 145 ? ? ? I . n A 1 115 LYS 115 146 ? ? ? I . n A 1 116 HIS 116 147 ? ? ? I . n A 1 117 HIS 117 148 ? ? ? I . n A 1 118 HIS 118 149 ? ? ? I . n A 1 119 HIS 119 150 ? ? ? I . n A 1 120 HIS 120 151 ? ? ? I . n A 1 121 HIS 121 152 ? ? ? I . n B 1 1 GLU 1 32 ? ? ? J . n B 1 2 THR 2 33 ? ? ? J . n B 1 3 GLY 3 34 ? ? ? J . n B 1 4 GLY 4 35 ? ? ? J . n B 1 5 THR 5 36 ? ? ? J . n B 1 6 ASN 6 37 ? ? ? J . n B 1 7 PRO 7 38 ? ? ? J . n B 1 8 ILE 8 39 ? ? ? J . n B 1 9 CYS 9 40 40 CYS CYS J . n B 1 10 LYS 10 41 41 LYS LYS J . n B 1 11 GLY 11 42 42 GLY GLY J . n B 1 12 CYS 12 43 43 CYS CYS J . n B 1 13 LEU 13 44 44 LEU LEU J . n B 1 14 SER 14 45 45 SER SER J . n B 1 15 CYS 15 46 46 CYS CYS J . n B 1 16 SER 16 47 47 SER SER J . n B 1 17 LYS 17 48 48 LYS LYS J . n B 1 18 ASP 18 49 49 ASP ASP J . n B 1 19 ASN 19 50 50 ASN ASN J . n B 1 20 GLY 20 51 51 GLY GLY J . n B 1 21 CYS 21 52 52 CYS CYS J . n B 1 22 LEU 22 53 53 LEU LEU J . n B 1 23 ARG 23 54 54 ARG ARG J . n B 1 24 CYS 24 55 55 CYS CYS J . n B 1 25 GLN 25 56 56 GLN GLN J . n B 1 26 PRO 26 57 57 PRO PRO J . n B 1 27 LYS 27 58 58 LYS LYS J . n B 1 28 LEU 28 59 59 LEU LEU J . n B 1 29 PHE 29 60 60 PHE PHE J . n B 1 30 PHE 30 61 61 PHE PHE J . n B 1 31 TYR 31 62 62 TYR TYR J . n B 1 32 LEU 32 63 63 LEU LEU J . n B 1 33 ARG 33 64 64 ARG ARG J . n B 1 34 ARG 34 65 65 ARG ARG J . n B 1 35 GLU 35 66 66 GLU GLU J . n B 1 36 GLY 36 67 67 GLY GLY J . n B 1 37 MET 37 68 68 MET MET J . n B 1 38 ARG 38 69 69 ARG ARG J . n B 1 39 GLN 39 70 70 GLN GLN J . n B 1 40 TYR 40 71 71 TYR TYR J . n B 1 41 GLY 41 72 72 GLY GLY J . n B 1 42 GLU 42 73 73 GLU GLU J . n B 1 43 CYS 43 74 74 CYS CYS J . n B 1 44 LEU 44 75 75 LEU LEU J . n B 1 45 GLN 45 76 76 GLN GLN J . n B 1 46 SER 46 77 77 SER SER J . n B 1 47 CYS 47 78 78 CYS CYS J . n B 1 48 PRO 48 79 79 PRO PRO J . n B 1 49 PRO 49 80 80 PRO PRO J . n B 1 50 GLY 50 81 81 GLY GLY J . n B 1 51 TYR 51 82 82 TYR TYR J . n B 1 52 TYR 52 83 83 TYR TYR J . n B 1 53 GLY 53 84 84 GLY GLY J . n B 1 54 VAL 54 85 85 VAL VAL J . n B 1 55 ARG 55 86 86 ARG ARG J . n B 1 56 GLY 56 87 87 GLY GLY J . n B 1 57 PRO 57 88 88 PRO PRO J . n B 1 58 ASP 58 89 89 ASP ASP J . n B 1 59 MET 59 90 90 MET MET J . n B 1 60 ASN 60 91 91 ASN ASN J . n B 1 61 ARG 61 92 92 ARG ARG J . n B 1 62 CYS 62 93 93 CYS CYS J . n B 1 63 SER 63 94 94 SER SER J . n B 1 64 ARG 64 95 95 ARG ARG J . n B 1 65 CYS 65 96 96 CYS CYS J . n B 1 66 ARG 66 97 97 ARG ARG J . n B 1 67 ILE 67 98 98 ILE ILE J . n B 1 68 GLU 68 99 99 GLU GLU J . n B 1 69 ASN 69 100 100 ASN ASN J . n B 1 70 CYS 70 101 101 CYS CYS J . n B 1 71 ASP 71 102 102 ASP ASP J . n B 1 72 SER 72 103 103 SER SER J . n B 1 73 CYS 73 104 104 CYS CYS J . n B 1 74 PHE 74 105 105 PHE PHE J . n B 1 75 SER 75 106 106 SER SER J . n B 1 76 ARG 76 107 107 ARG ARG J . n B 1 77 ASP 77 108 108 ASP ASP J . n B 1 78 PHE 78 109 109 PHE PHE J . n B 1 79 CYS 79 110 110 CYS CYS J . n B 1 80 ILE 80 111 111 ILE ILE J . n B 1 81 LYS 81 112 112 LYS LYS J . n B 1 82 CYS 82 113 113 CYS CYS J . n B 1 83 LYS 83 114 114 LYS LYS J . n B 1 84 SER 84 115 115 SER SER J . n B 1 85 GLY 85 116 116 GLY GLY J . n B 1 86 PHE 86 117 117 PHE PHE J . n B 1 87 TYR 87 118 118 TYR TYR J . n B 1 88 SER 88 119 119 SER SER J . n B 1 89 HIS 89 120 120 HIS HIS J . n B 1 90 LYS 90 121 121 LYS LYS J . n B 1 91 GLY 91 122 122 GLY GLY J . n B 1 92 GLN 92 123 123 GLN GLN J . n B 1 93 CYS 93 124 124 CYS CYS J . n B 1 94 PHE 94 125 125 PHE PHE J . n B 1 95 GLU 95 126 126 GLU GLU J . n B 1 96 GLU 96 127 127 GLU GLU J . n B 1 97 CYS 97 128 128 CYS CYS J . n B 1 98 PRO 98 129 129 PRO PRO J . n B 1 99 GLU 99 130 130 GLU GLU J . n B 1 100 GLY 100 131 131 GLY GLY J . n B 1 101 PHE 101 132 132 PHE PHE J . n B 1 102 ALA 102 133 133 ALA ALA J . n B 1 103 PRO 103 134 134 PRO PRO J . n B 1 104 LEU 104 135 135 LEU LEU J . n B 1 105 ASP 105 136 136 ASP ASP J . n B 1 106 ASP 106 137 137 ASP ASP J . n B 1 107 THR 107 138 138 THR THR J . n B 1 108 MET 108 139 139 MET MET J . n B 1 109 VAL 109 140 140 VAL VAL J . n B 1 110 CYS 110 141 141 CYS CYS J . n B 1 111 VAL 111 142 142 VAL VAL J . n B 1 112 ASP 112 143 143 ASP ASP J . n B 1 113 GLY 113 144 ? ? ? J . n B 1 114 THR 114 145 ? ? ? J . n B 1 115 LYS 115 146 ? ? ? J . n B 1 116 HIS 116 147 ? ? ? J . n B 1 117 HIS 117 148 ? ? ? J . n B 1 118 HIS 118 149 ? ? ? J . n B 1 119 HIS 119 150 ? ? ? J . n B 1 120 HIS 120 151 ? ? ? J . n B 1 121 HIS 121 152 ? ? ? J . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 2 1 B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-20 2 'Structure model' 1 1 2013-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _software.name REFMAC _software.classification refinement _software.version 5.7.0029 _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS I 48 ? ? -36.47 -38.60 2 1 ARG I 54 ? ? -169.29 110.90 3 1 ARG I 69 ? ? -57.73 170.28 4 1 PRO I 79 ? ? -70.43 -155.60 5 1 SER I 103 ? ? -169.17 106.60 6 1 PHE I 105 ? ? -132.72 -39.22 7 1 HIS I 120 ? ? -167.52 118.80 8 1 GLU I 126 ? ? -62.14 -71.70 9 1 PRO I 134 ? ? -63.11 -170.25 10 1 ASP I 136 ? ? -57.77 84.62 11 1 MET I 139 ? ? 88.68 30.76 12 1 SER J 45 ? ? -166.27 77.48 13 1 ASP J 49 ? ? -90.91 -81.95 14 1 MET J 90 ? ? 178.33 160.12 15 1 ILE J 98 ? ? -37.33 132.24 16 1 LYS J 114 ? ? -58.01 171.29 17 1 HIS J 120 ? ? -161.25 113.12 18 1 GLU J 130 ? ? -34.87 126.36 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 I ARG 65 ? CG ? A ARG 34 CG 2 1 Y 1 I ARG 65 ? CD ? A ARG 34 CD 3 1 Y 1 I ARG 65 ? NE ? A ARG 34 NE 4 1 Y 1 I ARG 65 ? CZ ? A ARG 34 CZ 5 1 Y 1 I ARG 65 ? NH1 ? A ARG 34 NH1 6 1 Y 1 I ARG 65 ? NH2 ? A ARG 34 NH2 7 1 Y 1 I ARG 69 ? CG ? A ARG 38 CG 8 1 Y 1 I ARG 69 ? CD ? A ARG 38 CD 9 1 Y 1 I ARG 69 ? NE ? A ARG 38 NE 10 1 Y 1 I ARG 69 ? CZ ? A ARG 38 CZ 11 1 Y 1 I ARG 69 ? NH1 ? A ARG 38 NH1 12 1 Y 1 I ARG 69 ? NH2 ? A ARG 38 NH2 13 1 Y 1 I LYS 114 ? CG ? A LYS 83 CG 14 1 Y 1 I LYS 114 ? CD ? A LYS 83 CD 15 1 Y 1 I LYS 114 ? CE ? A LYS 83 CE 16 1 Y 1 I LYS 114 ? NZ ? A LYS 83 NZ 17 1 Y 1 I GLU 126 ? CG ? A GLU 95 CG 18 1 Y 1 I GLU 126 ? CD ? A GLU 95 CD 19 1 Y 1 I GLU 126 ? OE1 ? A GLU 95 OE1 20 1 Y 1 I GLU 126 ? OE2 ? A GLU 95 OE2 21 1 Y 1 I GLU 127 ? CG ? A GLU 96 CG 22 1 Y 1 I GLU 127 ? CD ? A GLU 96 CD 23 1 Y 1 I GLU 127 ? OE1 ? A GLU 96 OE1 24 1 Y 1 I GLU 127 ? OE2 ? A GLU 96 OE2 25 1 Y 1 I GLU 130 ? CG ? A GLU 99 CG 26 1 Y 1 I GLU 130 ? CD ? A GLU 99 CD 27 1 Y 1 I GLU 130 ? OE1 ? A GLU 99 OE1 28 1 Y 1 I GLU 130 ? OE2 ? A GLU 99 OE2 29 1 Y 1 I ASP 136 ? CG ? A ASP 105 CG 30 1 Y 1 I ASP 136 ? OD1 ? A ASP 105 OD1 31 1 Y 1 I ASP 136 ? OD2 ? A ASP 105 OD2 32 1 Y 1 I ASP 137 ? CG ? A ASP 106 CG 33 1 Y 1 I ASP 137 ? OD1 ? A ASP 106 OD1 34 1 Y 1 I ASP 137 ? OD2 ? A ASP 106 OD2 35 1 Y 1 J LYS 48 ? CG ? B LYS 17 CG 36 1 Y 1 J LYS 48 ? CD ? B LYS 17 CD 37 1 Y 1 J LYS 48 ? CE ? B LYS 17 CE 38 1 Y 1 J LYS 48 ? NZ ? B LYS 17 NZ 39 1 Y 1 J ASP 49 ? CG ? B ASP 18 CG 40 1 Y 1 J ASP 49 ? OD1 ? B ASP 18 OD1 41 1 Y 1 J ASP 49 ? OD2 ? B ASP 18 OD2 42 1 Y 1 J ASN 50 ? CG ? B ASN 19 CG 43 1 Y 1 J ASN 50 ? OD1 ? B ASN 19 OD1 44 1 Y 1 J ASN 50 ? ND2 ? B ASN 19 ND2 45 1 Y 1 J ARG 54 ? CG ? B ARG 23 CG 46 1 Y 1 J ARG 54 ? CD ? B ARG 23 CD 47 1 Y 1 J ARG 54 ? NE ? B ARG 23 NE 48 1 Y 1 J ARG 54 ? CZ ? B ARG 23 CZ 49 1 Y 1 J ARG 54 ? NH1 ? B ARG 23 NH1 50 1 Y 1 J ARG 54 ? NH2 ? B ARG 23 NH2 51 1 Y 1 J LYS 58 ? CG ? B LYS 27 CG 52 1 Y 1 J LYS 58 ? CD ? B LYS 27 CD 53 1 Y 1 J LYS 58 ? CE ? B LYS 27 CE 54 1 Y 1 J LYS 58 ? NZ ? B LYS 27 NZ 55 1 Y 1 J ARG 64 ? CG ? B ARG 33 CG 56 1 Y 1 J ARG 64 ? CD ? B ARG 33 CD 57 1 Y 1 J ARG 64 ? NE ? B ARG 33 NE 58 1 Y 1 J ARG 64 ? CZ ? B ARG 33 CZ 59 1 Y 1 J ARG 64 ? NH1 ? B ARG 33 NH1 60 1 Y 1 J ARG 64 ? NH2 ? B ARG 33 NH2 61 1 Y 1 J ARG 65 ? CG ? B ARG 34 CG 62 1 Y 1 J ARG 65 ? CD ? B ARG 34 CD 63 1 Y 1 J ARG 65 ? NE ? B ARG 34 NE 64 1 Y 1 J ARG 65 ? CZ ? B ARG 34 CZ 65 1 Y 1 J ARG 65 ? NH1 ? B ARG 34 NH1 66 1 Y 1 J ARG 65 ? NH2 ? B ARG 34 NH2 67 1 Y 1 J ARG 69 ? CG ? B ARG 38 CG 68 1 Y 1 J ARG 69 ? CD ? B ARG 38 CD 69 1 Y 1 J ARG 69 ? NE ? B ARG 38 NE 70 1 Y 1 J ARG 69 ? CZ ? B ARG 38 CZ 71 1 Y 1 J ARG 69 ? NH1 ? B ARG 38 NH1 72 1 Y 1 J ARG 69 ? NH2 ? B ARG 38 NH2 73 1 Y 1 J ARG 97 ? CG ? B ARG 66 CG 74 1 Y 1 J ARG 97 ? CD ? B ARG 66 CD 75 1 Y 1 J ARG 97 ? NE ? B ARG 66 NE 76 1 Y 1 J ARG 97 ? CZ ? B ARG 66 CZ 77 1 Y 1 J ARG 97 ? NH1 ? B ARG 66 NH1 78 1 Y 1 J ARG 97 ? NH2 ? B ARG 66 NH2 79 1 Y 1 J LYS 112 ? CG ? B LYS 81 CG 80 1 Y 1 J LYS 112 ? CD ? B LYS 81 CD 81 1 Y 1 J LYS 112 ? CE ? B LYS 81 CE 82 1 Y 1 J LYS 112 ? NZ ? B LYS 81 NZ 83 1 Y 1 J ASP 143 ? CG ? B ASP 112 CG 84 1 Y 1 J ASP 143 ? OD1 ? B ASP 112 OD1 85 1 Y 1 J ASP 143 ? OD2 ? B ASP 112 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 I GLU 32 ? A GLU 1 2 1 Y 1 I THR 33 ? A THR 2 3 1 Y 1 I GLY 34 ? A GLY 3 4 1 Y 1 I GLY 35 ? A GLY 4 5 1 Y 1 I THR 36 ? A THR 5 6 1 Y 1 I ASN 37 ? A ASN 6 7 1 Y 1 I PRO 38 ? A PRO 7 8 1 Y 1 I ASP 143 ? A ASP 112 9 1 Y 1 I GLY 144 ? A GLY 113 10 1 Y 1 I THR 145 ? A THR 114 11 1 Y 1 I LYS 146 ? A LYS 115 12 1 Y 1 I HIS 147 ? A HIS 116 13 1 Y 1 I HIS 148 ? A HIS 117 14 1 Y 1 I HIS 149 ? A HIS 118 15 1 Y 1 I HIS 150 ? A HIS 119 16 1 Y 1 I HIS 151 ? A HIS 120 17 1 Y 1 I HIS 152 ? A HIS 121 18 1 Y 1 J GLU 32 ? B GLU 1 19 1 Y 1 J THR 33 ? B THR 2 20 1 Y 1 J GLY 34 ? B GLY 3 21 1 Y 1 J GLY 35 ? B GLY 4 22 1 Y 1 J THR 36 ? B THR 5 23 1 Y 1 J ASN 37 ? B ASN 6 24 1 Y 1 J PRO 38 ? B PRO 7 25 1 Y 1 J ILE 39 ? B ILE 8 26 1 Y 1 J GLY 144 ? B GLY 113 27 1 Y 1 J THR 145 ? B THR 114 28 1 Y 1 J LYS 146 ? B LYS 115 29 1 Y 1 J HIS 147 ? B HIS 116 30 1 Y 1 J HIS 148 ? B HIS 117 31 1 Y 1 J HIS 149 ? B HIS 118 32 1 Y 1 J HIS 150 ? B HIS 119 33 1 Y 1 J HIS 151 ? B HIS 120 34 1 Y 1 J HIS 152 ? B HIS 121 #