HEADER MEMBRANE PROTEIN 02-OCT-13 4C9F TITLE STRUCTURE OF SIGN-R1 IN COMPLEX WITH SULFODEXTRAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD209 ANTIGEN-LIKE PROTEIN B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: CRD, RESIDUES 191-323; COMPND 5 SYNONYM: DC-SIGN-RELATED PROTEIN 1, DC-SIGNR1, OTB7, SIGN-R1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: MACROPHAGES KEYWDS MEMBRANE PROTEIN, C-TYPE LECTIN, INNATE IMMUNITY EXPDTA X-RAY DIFFRACTION AUTHOR N.SILVA-MARTIN,S.G.BARTUAL,A.RODRIGUEZ,E.RAMIREZ,P.CHACON, AUTHOR 2 R.M.ANTHONY,C.G.PARK,J.A.HERMOSO REVDAT 5 20-DEC-23 4C9F 1 HETSYN REVDAT 4 29-JUL-20 4C9F 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 FORMUL LINK SITE ATOM REVDAT 3 25-FEB-15 4C9F 1 JRNL REVDAT 2 12-NOV-14 4C9F 1 JRNL REVDAT 1 15-OCT-14 4C9F 0 JRNL AUTH N.SILVA-MARTIN,S.G.BARTUAL,A.RODRIGUEZ,E.RAMIREZ,P.CHACON, JRNL AUTH 2 R.M.ANTHONY,C.G.PARK,J.A.HERMOSO JRNL TITL STRUCTURAL BASIS FOR SELECTIVE RECOGNITION OF ENDOGENOUS AND JRNL TITL 2 MICROBIAL POLYSACCHARIDES BY MACROPHAGE RECEPTOR SIGN-R1 JRNL REF STRUCTURE V. 22 1595 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25450767 JRNL DOI 10.1016/J.STR.2014.09.001 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 25612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4315 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 201 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.49000 REMARK 3 B22 (A**2) : 1.80000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.418 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.360 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4643 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4134 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6322 ; 1.908 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9563 ; 0.908 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 7.883 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 212 ;34.622 ;25.094 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 774 ;16.735 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;25.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 683 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5013 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1075 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4C9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290055014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30140 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 61.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ZHG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.01250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.01250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 190 REMARK 465 THR A 323 REMARK 465 LYS B 190 REMARK 465 LYS C 190 REMARK 465 THR C 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 296 O2 GLC F 2 2.01 REMARK 500 ND2 ASN C 217 O HOH C 2011 2.11 REMARK 500 OD1 ASN C 234 O HOH C 2015 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 192 129.93 -170.01 REMARK 500 LEU A 203 59.35 35.30 REMARK 500 GLU A 262 -8.05 -58.56 REMARK 500 ALA A 263 20.05 -144.14 REMARK 500 ASN A 287 -164.08 -124.43 REMARK 500 ASN A 288 43.08 37.12 REMARK 500 ASN B 287 -169.25 -127.09 REMARK 500 ASN B 288 47.66 37.75 REMARK 500 ASN C 287 -159.48 -124.59 REMARK 500 ASN C 288 51.21 25.00 REMARK 500 LEU D 191 -156.77 -148.51 REMARK 500 LYS D 249 -36.12 -135.23 REMARK 500 LYS D 260 -71.40 -71.85 REMARK 500 ALA D 263 16.43 59.84 REMARK 500 ASN D 288 51.10 29.27 REMARK 500 CYS D 322 -76.89 -111.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 290 GLU B 291 149.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2037 DISTANCE = 6.70 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 285 OE1 REMARK 620 2 GLU A 285 OE2 44.3 REMARK 620 3 ASN A 287 OD1 109.3 104.5 REMARK 620 4 GLU A 292 OE1 159.5 154.6 77.5 REMARK 620 5 ASP A 304 O 98.1 111.7 143.7 69.2 REMARK 620 6 ASP A 304 OD1 73.3 117.4 89.1 87.8 76.1 REMARK 620 7 GQ1 E 1 O5 130.7 91.0 100.1 64.0 77.9 147.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 285 OE1 REMARK 620 2 ASN B 287 OD1 97.1 REMARK 620 3 GLU B 292 OE1 172.3 78.5 REMARK 620 4 ASP B 304 OD1 75.2 86.1 98.0 REMARK 620 5 ASP B 304 O 105.0 153.4 77.7 85.6 REMARK 620 6 GQ1 F 1 O4 80.7 94.4 105.9 155.7 103.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 285 OE1 REMARK 620 2 GLU C 285 OE2 42.9 REMARK 620 3 ASN C 287 OD1 94.4 91.6 REMARK 620 4 GLU C 292 OE1 170.3 145.7 82.1 REMARK 620 5 ASP C 304 O 107.0 123.1 144.8 72.1 REMARK 620 6 ASP C 304 OD1 77.0 118.8 80.4 93.4 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 285 OE1 REMARK 620 2 ASN D 287 OD1 93.9 REMARK 620 3 GLU D 292 OE1 155.0 88.4 REMARK 620 4 ASP D 304 O 99.2 144.7 66.6 REMARK 620 5 ASP D 304 OD1 73.9 80.4 81.9 72.0 REMARK 620 N 1 2 3 4 DBREF 4C9F A 191 323 UNP Q8CJ91 C209B_MOUSE 191 323 DBREF 4C9F B 191 323 UNP Q8CJ91 C209B_MOUSE 191 323 DBREF 4C9F C 191 323 UNP Q8CJ91 C209B_MOUSE 191 323 DBREF 4C9F D 191 323 UNP Q8CJ91 C209B_MOUSE 191 323 SEQADV 4C9F LYS A 190 UNP Q8CJ91 EXPRESSION TAG SEQADV 4C9F LYS B 190 UNP Q8CJ91 EXPRESSION TAG SEQADV 4C9F LYS C 190 UNP Q8CJ91 EXPRESSION TAG SEQADV 4C9F LYS D 190 UNP Q8CJ91 EXPRESSION TAG SEQRES 1 A 134 LYS LEU CYS ARG LEU CYS PRO TRP ASP TRP THR PHE LEU SEQRES 2 A 134 LEU GLY ASN CYS TYR PHE PHE SER LYS SER GLN ARG ASN SEQRES 3 A 134 TRP ASN ASP ALA VAL THR ALA CYS LYS GLU VAL LYS ALA SEQRES 4 A 134 GLN LEU VAL ILE ILE ASN SER ASP GLU GLU GLN THR PHE SEQRES 5 A 134 LEU GLN GLN THR SER LYS ALA LYS GLY PRO THR TRP MET SEQRES 6 A 134 GLY LEU SER ASP LEU LYS LYS GLU ALA THR TRP LEU TRP SEQRES 7 A 134 VAL ASP GLY SER THR LEU SER SER ARG PHE GLN LYS TYR SEQRES 8 A 134 TRP ASN ARG GLY GLU PRO ASN ASN ILE GLY GLU GLU ASP SEQRES 9 A 134 CYS VAL GLU PHE ALA GLY ASP GLY TRP ASN ASP SER LYS SEQRES 10 A 134 CYS GLU LEU LYS LYS PHE TRP ILE CYS LYS LYS SER ALA SEQRES 11 A 134 THR PRO CYS THR SEQRES 1 B 134 LYS LEU CYS ARG LEU CYS PRO TRP ASP TRP THR PHE LEU SEQRES 2 B 134 LEU GLY ASN CYS TYR PHE PHE SER LYS SER GLN ARG ASN SEQRES 3 B 134 TRP ASN ASP ALA VAL THR ALA CYS LYS GLU VAL LYS ALA SEQRES 4 B 134 GLN LEU VAL ILE ILE ASN SER ASP GLU GLU GLN THR PHE SEQRES 5 B 134 LEU GLN GLN THR SER LYS ALA LYS GLY PRO THR TRP MET SEQRES 6 B 134 GLY LEU SER ASP LEU LYS LYS GLU ALA THR TRP LEU TRP SEQRES 7 B 134 VAL ASP GLY SER THR LEU SER SER ARG PHE GLN LYS TYR SEQRES 8 B 134 TRP ASN ARG GLY GLU PRO ASN ASN ILE GLY GLU GLU ASP SEQRES 9 B 134 CYS VAL GLU PHE ALA GLY ASP GLY TRP ASN ASP SER LYS SEQRES 10 B 134 CYS GLU LEU LYS LYS PHE TRP ILE CYS LYS LYS SER ALA SEQRES 11 B 134 THR PRO CYS THR SEQRES 1 C 134 LYS LEU CYS ARG LEU CYS PRO TRP ASP TRP THR PHE LEU SEQRES 2 C 134 LEU GLY ASN CYS TYR PHE PHE SER LYS SER GLN ARG ASN SEQRES 3 C 134 TRP ASN ASP ALA VAL THR ALA CYS LYS GLU VAL LYS ALA SEQRES 4 C 134 GLN LEU VAL ILE ILE ASN SER ASP GLU GLU GLN THR PHE SEQRES 5 C 134 LEU GLN GLN THR SER LYS ALA LYS GLY PRO THR TRP MET SEQRES 6 C 134 GLY LEU SER ASP LEU LYS LYS GLU ALA THR TRP LEU TRP SEQRES 7 C 134 VAL ASP GLY SER THR LEU SER SER ARG PHE GLN LYS TYR SEQRES 8 C 134 TRP ASN ARG GLY GLU PRO ASN ASN ILE GLY GLU GLU ASP SEQRES 9 C 134 CYS VAL GLU PHE ALA GLY ASP GLY TRP ASN ASP SER LYS SEQRES 10 C 134 CYS GLU LEU LYS LYS PHE TRP ILE CYS LYS LYS SER ALA SEQRES 11 C 134 THR PRO CYS THR SEQRES 1 D 134 LYS LEU CYS ARG LEU CYS PRO TRP ASP TRP THR PHE LEU SEQRES 2 D 134 LEU GLY ASN CYS TYR PHE PHE SER LYS SER GLN ARG ASN SEQRES 3 D 134 TRP ASN ASP ALA VAL THR ALA CYS LYS GLU VAL LYS ALA SEQRES 4 D 134 GLN LEU VAL ILE ILE ASN SER ASP GLU GLU GLN THR PHE SEQRES 5 D 134 LEU GLN GLN THR SER LYS ALA LYS GLY PRO THR TRP MET SEQRES 6 D 134 GLY LEU SER ASP LEU LYS LYS GLU ALA THR TRP LEU TRP SEQRES 7 D 134 VAL ASP GLY SER THR LEU SER SER ARG PHE GLN LYS TYR SEQRES 8 D 134 TRP ASN ARG GLY GLU PRO ASN ASN ILE GLY GLU GLU ASP SEQRES 9 D 134 CYS VAL GLU PHE ALA GLY ASP GLY TRP ASN ASP SER LYS SEQRES 10 D 134 CYS GLU LEU LYS LYS PHE TRP ILE CYS LYS LYS SER ALA SEQRES 11 D 134 THR PRO CYS THR HET GQ1 E 1 16 HET GLC E 2 11 HET GQ1 F 1 12 HET GLC F 2 11 HET GQ1 G 1 16 HET GLC G 2 11 HET GLC G 3 11 HET GLC G 4 11 HET CA A 401 1 HET SO4 A1323 5 HET CA B 401 1 HET SO4 B1324 5 HET SO4 B1325 5 HET SO4 B1326 5 HET SO4 B1327 5 HET SO4 B1328 5 HET CA C 401 1 HET SO4 C1323 5 HET SO4 C1324 5 HET SO4 C1326 5 HET CA D 401 1 HET SO4 D1324 5 HET GQ1 D1325 16 HET GQ1 D1326 16 HET GQ1 D1327 16 HETNAM GQ1 4-O-SULFO-ALPHA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETSYN GQ1 4-O-SULFO-ALPHA-D-GLUCOSE; 4-O-SULFO-D-GLUCOSE; 4-O- HETSYN 2 GQ1 SULFO-GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 5 GQ1 6(C6 H12 O9 S) FORMUL 5 GLC 5(C6 H12 O6) FORMUL 8 CA 4(CA 2+) FORMUL 9 SO4 10(O4 S 2-) FORMUL 25 HOH *164(H2 O) HELIX 1 1 ASN A 215 GLU A 225 1 11 HELIX 2 2 SER A 235 GLY A 250 1 16 HELIX 3 3 SER A 274 TYR A 280 5 7 HELIX 4 4 ASN B 215 GLU B 225 1 11 HELIX 5 5 SER B 235 GLY B 250 1 16 HELIX 6 6 SER B 274 TYR B 280 5 7 HELIX 7 7 ASN C 215 GLU C 225 1 11 HELIX 8 8 SER C 235 GLY C 250 1 16 HELIX 9 9 SER C 274 TYR C 280 5 7 HELIX 10 10 TRP D 216 VAL D 226 1 11 HELIX 11 11 SER D 235 ALA D 248 1 14 HELIX 12 12 SER D 274 TYR D 280 5 7 SHEET 1 AA 5 THR A 200 LEU A 202 0 SHEET 2 AA 5 ASN A 205 PHE A 209 -1 O ASN A 205 N LEU A 202 SHEET 3 AA 5 PHE A 312 SER A 318 -1 O CYS A 315 N PHE A 208 SHEET 4 AA 5 THR A 252 SER A 257 1 O TRP A 253 N ILE A 314 SHEET 5 AA 5 LEU A 266 TRP A 267 1 O LEU A 266 N SER A 257 SHEET 1 AB 4 THR A 200 LEU A 202 0 SHEET 2 AB 4 ASN A 205 PHE A 209 -1 O ASN A 205 N LEU A 202 SHEET 3 AB 4 PHE A 312 SER A 318 -1 O CYS A 315 N PHE A 208 SHEET 4 AB 4 GLN A 229 LEU A 230 -1 O GLN A 229 N LYS A 316 SHEET 1 AC 2 LEU A 266 TRP A 267 0 SHEET 2 AC 2 THR A 252 SER A 257 1 O SER A 257 N LEU A 266 SHEET 1 AD 6 THR A 200 LEU A 202 0 SHEET 2 AD 6 ASN A 205 PHE A 209 -1 O ASN A 205 N LEU A 202 SHEET 3 AD 6 PHE A 312 SER A 318 -1 O CYS A 315 N PHE A 208 SHEET 4 AD 6 THR A 252 SER A 257 1 O TRP A 253 N ILE A 314 SHEET 5 AD 6 CYS A 294 ALA A 298 -1 O VAL A 295 N MET A 254 SHEET 6 AD 6 GLY A 301 SER A 305 -1 O GLY A 301 N ALA A 298 SHEET 1 BA 5 THR B 200 LEU B 202 0 SHEET 2 BA 5 ASN B 205 PHE B 209 -1 O ASN B 205 N LEU B 202 SHEET 3 BA 5 PHE B 312 SER B 318 -1 O CYS B 315 N PHE B 208 SHEET 4 BA 5 THR B 252 LYS B 261 1 O TRP B 253 N ILE B 314 SHEET 5 BA 5 THR B 264 TRP B 267 1 O THR B 264 N LYS B 261 SHEET 1 BB 4 THR B 200 LEU B 202 0 SHEET 2 BB 4 ASN B 205 PHE B 209 -1 O ASN B 205 N LEU B 202 SHEET 3 BB 4 PHE B 312 SER B 318 -1 O CYS B 315 N PHE B 208 SHEET 4 BB 4 GLN B 229 LEU B 230 -1 O GLN B 229 N LYS B 316 SHEET 1 BC 2 THR B 264 TRP B 267 0 SHEET 2 BC 2 THR B 252 LYS B 261 1 O SER B 257 N LEU B 266 SHEET 1 BD 6 THR B 200 LEU B 202 0 SHEET 2 BD 6 ASN B 205 PHE B 209 -1 O ASN B 205 N LEU B 202 SHEET 3 BD 6 PHE B 312 SER B 318 -1 O CYS B 315 N PHE B 208 SHEET 4 BD 6 THR B 252 LYS B 261 1 O TRP B 253 N ILE B 314 SHEET 5 BD 6 CYS B 294 ALA B 298 -1 O VAL B 295 N MET B 254 SHEET 6 BD 6 GLY B 301 SER B 305 -1 O GLY B 301 N ALA B 298 SHEET 1 CA 5 THR C 200 LEU C 202 0 SHEET 2 CA 5 ASN C 205 PHE C 209 -1 O ASN C 205 N LEU C 202 SHEET 3 CA 5 PHE C 312 SER C 318 -1 O CYS C 315 N PHE C 208 SHEET 4 CA 5 THR C 252 LYS C 261 1 O TRP C 253 N ILE C 314 SHEET 5 CA 5 THR C 264 TRP C 267 1 N THR C 264 O LYS C 261 SHEET 1 CB 4 THR C 200 LEU C 202 0 SHEET 2 CB 4 ASN C 205 PHE C 209 -1 O ASN C 205 N LEU C 202 SHEET 3 CB 4 PHE C 312 SER C 318 -1 O CYS C 315 N PHE C 208 SHEET 4 CB 4 GLN C 229 LEU C 230 -1 O GLN C 229 N LYS C 316 SHEET 1 CC 2 THR C 264 TRP C 267 0 SHEET 2 CC 2 THR C 252 LYS C 261 1 O SER C 257 N LEU C 266 SHEET 1 CD 6 THR C 200 LEU C 202 0 SHEET 2 CD 6 ASN C 205 PHE C 209 -1 O ASN C 205 N LEU C 202 SHEET 3 CD 6 PHE C 312 SER C 318 -1 O CYS C 315 N PHE C 208 SHEET 4 CD 6 THR C 252 LYS C 261 1 O TRP C 253 N ILE C 314 SHEET 5 CD 6 CYS C 294 ALA C 298 -1 O VAL C 295 N MET C 254 SHEET 6 CD 6 GLY C 301 SER C 305 -1 O GLY C 301 N ALA C 298 SHEET 1 DA 5 THR D 200 LEU D 202 0 SHEET 2 DA 5 ASN D 205 PHE D 209 -1 O ASN D 205 N LEU D 202 SHEET 3 DA 5 LYS D 310 SER D 318 -1 O CYS D 315 N PHE D 208 SHEET 4 DA 5 THR D 252 SER D 257 1 O TRP D 253 N ILE D 314 SHEET 5 DA 5 LEU D 266 TRP D 267 -1 O LEU D 266 N SER D 257 SHEET 1 DB 4 THR D 200 LEU D 202 0 SHEET 2 DB 4 ASN D 205 PHE D 209 -1 O ASN D 205 N LEU D 202 SHEET 3 DB 4 LYS D 310 SER D 318 -1 O CYS D 315 N PHE D 208 SHEET 4 DB 4 GLN D 229 LEU D 230 -1 O GLN D 229 N LYS D 316 SHEET 1 DC 2 ARG D 214 ASN D 215 0 SHEET 2 DC 2 LYS D 310 SER D 318 -1 O LYS D 311 N ARG D 214 SHEET 1 DD 4 THR D 200 LEU D 202 0 SHEET 2 DD 4 ASN D 205 PHE D 209 -1 O ASN D 205 N LEU D 202 SHEET 3 DD 4 LYS D 310 SER D 318 -1 O CYS D 315 N PHE D 208 SHEET 4 DD 4 ARG D 214 ASN D 215 -1 O ARG D 214 N LYS D 311 SHEET 1 DE 2 LEU D 266 TRP D 267 0 SHEET 2 DE 2 THR D 252 SER D 257 -1 O SER D 257 N LEU D 266 SHEET 1 DF 6 THR D 200 LEU D 202 0 SHEET 2 DF 6 ASN D 205 PHE D 209 -1 O ASN D 205 N LEU D 202 SHEET 3 DF 6 LYS D 310 SER D 318 -1 O CYS D 315 N PHE D 208 SHEET 4 DF 6 THR D 252 SER D 257 1 O TRP D 253 N ILE D 314 SHEET 5 DF 6 CYS D 294 ALA D 298 -1 O VAL D 295 N MET D 254 SHEET 6 DF 6 GLY D 301 SER D 305 -1 O GLY D 301 N ALA D 298 SSBOND 1 CYS A 192 CYS A 322 1555 1555 2.06 SSBOND 2 CYS A 195 CYS A 206 1555 1555 2.01 SSBOND 3 CYS A 223 CYS A 315 1555 1555 2.01 SSBOND 4 CYS A 294 CYS A 307 1555 1555 2.05 SSBOND 5 CYS B 192 CYS B 322 1555 1555 1.99 SSBOND 6 CYS B 195 CYS B 206 1555 1555 2.05 SSBOND 7 CYS B 223 CYS B 315 1555 1555 2.04 SSBOND 8 CYS B 294 CYS B 307 1555 1555 2.01 SSBOND 9 CYS C 192 CYS C 322 1555 1555 2.07 SSBOND 10 CYS C 195 CYS C 206 1555 1555 1.99 SSBOND 11 CYS C 223 CYS C 315 1555 1555 2.06 SSBOND 12 CYS C 294 CYS C 307 1555 1555 2.02 SSBOND 13 CYS D 192 CYS D 322 1555 1555 2.02 SSBOND 14 CYS D 195 CYS D 206 1555 1555 2.07 SSBOND 15 CYS D 223 CYS D 315 1555 1555 2.05 SSBOND 16 CYS D 294 CYS D 307 1555 1555 1.99 LINK O6 GQ1 E 1 C1 GLC E 2 1555 1555 1.43 LINK O6 GQ1 F 1 C1 GLC F 2 1555 1555 1.44 LINK O6 GQ1 G 1 C1 GLC G 2 1555 1555 1.44 LINK O6 GLC G 2 C1 GLC G 3 1555 1555 1.46 LINK O6 GLC G 3 C1 GLC G 4 1555 1555 1.47 LINK OE1 GLU A 285 CA CA A 401 1555 1555 2.62 LINK OE2 GLU A 285 CA CA A 401 1555 1555 3.13 LINK OD1 ASN A 287 CA CA A 401 1555 1555 2.55 LINK OE1 GLU A 292 CA CA A 401 1555 1555 2.66 LINK O ASP A 304 CA CA A 401 1555 1555 2.74 LINK OD1 ASP A 304 CA CA A 401 1555 1555 2.14 LINK CA CA A 401 O5 GQ1 E 1 1555 1555 3.09 LINK OE1 GLU B 285 CA CA B 401 1555 1555 2.57 LINK OD1 ASN B 287 CA CA B 401 1555 1555 2.36 LINK OE1 GLU B 292 CA CA B 401 1555 1555 2.36 LINK OD1 ASP B 304 CA CA B 401 1555 1555 2.45 LINK O ASP B 304 CA CA B 401 1555 1555 2.64 LINK CA CA B 401 O4 GQ1 F 1 1555 1555 2.53 LINK OE1 GLU C 285 CA CA C 401 1555 1555 2.52 LINK OE2 GLU C 285 CA CA C 401 1555 1555 3.08 LINK OD1 ASN C 287 CA CA C 401 1555 1555 2.44 LINK OE1 GLU C 292 CA CA C 401 1555 1555 2.60 LINK O ASP C 304 CA CA C 401 1555 1555 2.49 LINK OD1 ASP C 304 CA CA C 401 1555 1555 2.26 LINK OE1 GLU D 285 CA CA D 401 1555 1555 2.55 LINK OD1 ASN D 287 CA CA D 401 1555 1555 2.37 LINK OE1 GLU D 292 CA CA D 401 1555 1555 2.52 LINK O ASP D 304 CA CA D 401 1555 1555 2.70 LINK OD1 ASP D 304 CA CA D 401 1555 1555 2.43 CISPEP 1 GLU A 285 PRO A 286 0 -3.01 CISPEP 2 GLU B 285 PRO B 286 0 -6.41 CISPEP 3 GLU C 285 PRO C 286 0 -3.74 CISPEP 4 GLU D 285 PRO D 286 0 -6.87 CRYST1 144.025 97.959 73.846 90.00 120.86 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006943 0.000000 0.004149 0.00000 SCALE2 0.000000 0.010208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015775 0.00000