HEADER RIBOSOMAL PROTEIN 05-OCT-13 4CA3 TITLE SOLUTION STRUCTURE OF STREPTOMYCES VIRGINIAE VIRA ACP5B COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYBRID POLYKETIDE SYNTHASE-NON RIBOSOMAL PEPTIDE COMPND 3 SYNTHETASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: VIRA, RESIDUES 6831-6914; COMPND 6 SYNONYM: ACYL CARRIER PROTEIN 5B; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VIRGINIAE; SOURCE 3 ORGANISM_TAXID: 1961; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBG102 (PET27 DERIVATIVE) KEYWDS RIBOSOMAL PROTEIN, ACYL CARRIER PROTEIN, POLYKETIDE SYNTHASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.DAVISON,J.DORIVAL,M.H.RABEHARINDRANTO,B.CHAGOT,A.GRUEZ,K.J.WEISSMAN REVDAT 3 14-JUN-23 4CA3 1 REMARK REVDAT 2 23-OCT-19 4CA3 1 REMARK ATOM REVDAT 1 04-JUN-14 4CA3 0 JRNL AUTH J.DAVISON,J.DORIVAL,M.H.RABEHARINDRANTO,H.MAZON,B.CHAGOT, JRNL AUTH 2 A.GRUEZ,K.J.WEISSMAN JRNL TITL INSIGHTS INTO THE FUNCTION OF TRANS-ACYL TRANSFERASE JRNL TITL 2 POLYKETIDE SYNTHASES FROM THE SAXS STRUCTURE OF A COMPLETE JRNL TITL 3 MODULE. JRNL REF CHEM.SCI. 2014 JRNL REFN ESSN 2041-6539 JRNL DOI 10.1039/C3SC53511H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 11 REMARK 3 AUTHORS : D.A. CASE,T.A.DARDEN,T.E.CHEATHAM,III, REMARK 3 C.L.SIMMERLING,J.WANG,R.E.DUKE,R.LUO,R.C.WALKER, REMARK 3 W.ZHANG,K.M.MERZ,B.ROBERTS,S.HAYIK,A.ROITBERG, REMARK 3 G.SEABRA,J.SWAILS,A.W.GOETZ,I.KOLOSSVARY,K.F. WONG, REMARK 3 F.PAESANI,J.VANICEK,R.M.WOLF,J.LIU,X.WU, REMARK 3 S.R.BROZELL,T.STEINBRECHER,H.GOHLKE,Q.CAI,X.YE, REMARK 3 J.WANG,M.-J.HSIEH,G.CUI,D.R.ROE,D.H.MATHEWS, REMARK 3 M.G.SEETIN,R.SALOMON-FERRER,C.SAGUI,V.BABIN,T. REMARK 3 LUCHKO,S.GUSAROV,A.KOVALENKO, REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058636. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 100 MM PHOSPHATE BUFFER, 1MM REMARK 210 EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D NOESYS; HNCACB; CBCACONH; REMARK 210 HCCHTOCSY; HCCHCOSY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : CYANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C,15N ACP5B REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 4 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A6910 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 6 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 7 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 8 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 8 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 8 ARG A6910 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 10 ARG A6910 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 11 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 11 ARG A6910 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 13 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 13 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG A6910 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 ARG A6910 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 15 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 18 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 19 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 19 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 20 ARG A6844 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 20 ARG A6849 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A6835 -47.33 -149.31 REMARK 500 1 ASP A6888 34.34 -140.35 REMARK 500 2 ASP A6835 -44.66 -163.26 REMARK 500 3 ASP A6835 -46.01 -146.15 REMARK 500 4 ASP A6835 -46.37 -146.85 REMARK 500 5 ASP A6835 -44.47 -155.37 REMARK 500 5 ASP A6888 33.42 -141.00 REMARK 500 6 ASP A6835 -46.25 -150.64 REMARK 500 6 ASP A6888 43.52 -142.04 REMARK 500 7 ASP A6835 -45.43 -146.37 REMARK 500 7 ASP A6888 41.81 -141.14 REMARK 500 8 ASP A6835 -47.78 -158.70 REMARK 500 9 ASP A6835 -51.32 -148.92 REMARK 500 9 CYS A6853 -161.37 -127.72 REMARK 500 9 ASP A6888 34.56 -140.19 REMARK 500 10 ASP A6835 -40.68 -147.86 REMARK 500 11 ASP A6835 -48.41 -155.75 REMARK 500 12 ASP A6835 -46.71 -135.52 REMARK 500 12 ASP A6888 45.13 -140.36 REMARK 500 13 SER A -1 40.88 -78.05 REMARK 500 13 ASP A6835 -41.21 -143.78 REMARK 500 14 ASP A6835 -39.89 -145.94 REMARK 500 15 ASP A6835 -43.33 -148.63 REMARK 500 16 ASP A6835 -47.47 -145.95 REMARK 500 17 ASP A6835 -48.48 -152.93 REMARK 500 17 ASP A6888 38.27 -140.39 REMARK 500 18 ALA A6831 17.51 -146.37 REMARK 500 18 ASP A6835 -42.90 -145.85 REMARK 500 19 ALA A6831 42.65 -82.22 REMARK 500 19 ASP A6835 -48.65 -157.17 REMARK 500 19 ALA A6862 -179.57 -68.48 REMARK 500 19 ASP A6888 36.82 -140.61 REMARK 500 20 ASP A6835 -52.79 -143.41 REMARK 500 20 ASP A6888 34.19 -141.36 REMARK 500 20 ALA A6911 39.89 -77.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19539 RELATED DB: BMRB DBREF 4CA3 A 6831 6914 UNP A4PHN0 A4PHN0_STRVG 6831 6914 SEQADV 4CA3 GLY A -4 UNP A4PHN0 EXPRESSION TAG SEQADV 4CA3 PRO A -3 UNP A4PHN0 EXPRESSION TAG SEQADV 4CA3 GLY A -2 UNP A4PHN0 EXPRESSION TAG SEQADV 4CA3 SER A -1 UNP A4PHN0 EXPRESSION TAG SEQRES 1 A 88 GLY PRO GLY SER ALA VAL ALA VAL ASP PRO ALA PRO VAL SEQRES 2 A 88 ALA ARG ALA LEU ARG GLU GLU LEU ALA ARG THR LEU TYR SEQRES 3 A 88 CYS GLU PRO GLY ASP ILE ASP ASP GLU ALA SER PHE ASN SEQRES 4 A 88 THR LEU GLY LEU ASP SER ILE LEU GLY VAL GLU PHE VAL SEQRES 5 A 88 ALA PHE VAL ASN GLN THR TYR GLY LEU ASP GLU LYS ALA SEQRES 6 A 88 GLY ILE LEU TYR ASP HIS PRO SER LEU ALA ALA LEU SER SEQRES 7 A 88 ARG HIS VAL ALA GLY ARG ALA ALA PRO VAL HELIX 1 1 ALA A 6837 THR A 6850 1 14 HELIX 2 2 PHE A 6864 LEU A 6867 1 4 HELIX 3 3 SER A 6871 TYR A 6885 1 15 HELIX 4 4 GLY A 6892 HIS A 6897 1 6 HELIX 5 5 LEU A 6900 ARG A 6910 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1