HEADER TRANSFERASE 09-OCT-13 4CAV TITLE CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE IN TITLE 2 COMPLEX WITH MYRISTOYL COA AND A BENZOFURAN LIGAND R0-09-4879 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 86-492; COMPND 5 SYNONYM: MYRISTOYL-COA\:PROTEIN N-MYRISTOYLTRANSFERASE, NMT, PEPTIDE COMPND 6 N-MYRISTOYLTRANSFERASE; COMPND 7 EC: 2.3.1.97; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P1 KEYWDS TRANSFERASE, DRUG DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR D.A.ROBINSON,W.FANG,O.G.RAIMI,D.E.BLAIR,J.HARRISON,G.F.RUDA, AUTHOR 2 D.E.A.LOCKHART,L.S.TORRIE,P.G.WYATT,I.H.GILBERT,D.M.F.VAN AALTEN REVDAT 3 20-DEC-23 4CAV 1 REMARK REVDAT 2 23-MAR-16 4CAV 1 JRNL REVDAT 1 17-SEP-14 4CAV 0 JRNL AUTH W.FANG,D.A.ROBINSON,O.G.RAIMI,D.E.BLAIR,J.R.HARRISON, JRNL AUTH 2 D.E.A.LOCKHART,L.S.TORRIE,G.F.RUDA,P.G.WYATT,I.H.GILBERT, JRNL AUTH 3 D.M.F.VAN AALTEN JRNL TITL N-MYRISTOYLTRANSFERASE IS A CELL WALL TARGET IN ASPERGILLUS JRNL TITL 2 FUMIGATUS. JRNL REF ACS CHEM.BIOL. V. 10 1425 2015 JRNL REFN ISSN 1554-8929 JRNL PMID 25706802 JRNL DOI 10.1021/CB5008647 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 33387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.620 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3384 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4608 ; 2.180 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 7.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;36.495 ;23.510 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 560 ;16.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.182 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.170 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2545 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1969 ; 1.172 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3201 ; 1.917 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1415 ; 3.256 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1405 ; 4.839 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 492 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9489 -5.5770 -18.8724 REMARK 3 T TENSOR REMARK 3 T11: 0.0124 T22: 0.0056 REMARK 3 T33: 0.0225 T12: 0.0052 REMARK 3 T13: 0.0036 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.7206 L22: 0.6502 REMARK 3 L33: 1.2494 L12: 0.0149 REMARK 3 L13: -0.2488 L23: 0.3751 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.0283 S13: -0.0907 REMARK 3 S21: 0.0064 S22: -0.0030 S23: -0.0071 REMARK 3 S31: 0.0873 S32: 0.0353 S33: 0.0354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058671. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1IYK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M NACL, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.71500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.69400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.50550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.69400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.71500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.50550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 ARG A 84 REMARK 465 SER A 85 REMARK 465 GLN A 86 REMARK 465 THR A 87 REMARK 465 GLN A 88 REMARK 465 PRO A 89 REMARK 465 VAL A 90 REMARK 465 PRO A 91 REMARK 465 ARG A 92 REMARK 465 PHE A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 THR A 96 REMARK 465 SER A 97 REMARK 465 THR A 98 REMARK 465 ASP A 99 REMARK 465 THR A 100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLN A 382 CG CD OE1 NE2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O9A MYA A 1495 O HOH A 2265 3554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 376 CB - CG - CD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ASP A 387 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG A 413 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 120 133.71 -37.10 REMARK 500 ALA A 283 -142.36 60.60 REMARK 500 TYR A 395 -128.81 -114.11 REMARK 500 HIS A 439 -141.57 56.51 REMARK 500 MET A 484 -158.83 -105.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 282 ALA A 283 142.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2XQ A 1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYA A 1495 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CAW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE REMARK 900 IN COMPLEX WITH MYRISTOYL COA AND A PYRAZOLE SULPHONAMIDE LIGAND REMARK 900 RELATED ID: 4CAX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ASPERGILLUS FUMIGATUS N-MYRISTOYL TRANSFERASE REMARK 900 IN COMPLEX WITH MYRISTOYL COA AND A PYRAZOLE SULPHONAMIDE LIGAND REMARK 900 (DDD85646) DBREF 4CAV A 86 492 UNP Q9UVX3 NMT_ASPFU 86 492 SEQADV 4CAV GLY A 82 UNP Q9UVX3 EXPRESSION TAG SEQADV 4CAV PRO A 83 UNP Q9UVX3 EXPRESSION TAG SEQADV 4CAV ARG A 84 UNP Q9UVX3 EXPRESSION TAG SEQADV 4CAV SER A 85 UNP Q9UVX3 EXPRESSION TAG SEQRES 1 A 411 GLY PRO ARG SER GLN THR GLN PRO VAL PRO ARG PHE ASP SEQRES 2 A 411 GLU THR SER THR ASP THR GLY GLY PRO ILE LYS ILE ILE SEQRES 3 A 411 ASP PRO GLU LYS VAL SER LYS GLU PRO ASP ALA LEU LEU SEQRES 4 A 411 GLU GLY PHE GLU TRP ALA THR LEU ASP LEU THR ASN GLU SEQRES 5 A 411 THR GLU LEU GLN GLU LEU TRP ASP LEU LEU THR TYR HIS SEQRES 6 A 411 TYR VAL GLU ASP ASP ASN ALA MET PHE ARG PHE ARG TYR SEQRES 7 A 411 SER GLN SER PHE LEU HIS TRP ALA LEU MET SER PRO GLY SEQRES 8 A 411 TRP LYS LYS GLU TRP HIS VAL GLY VAL ARG ALA THR LYS SEQRES 9 A 411 SER ARG LYS LEU VAL ALA SER ILE CYS GLY VAL PRO THR SEQRES 10 A 411 GLU ILE ASN VAL ARG ASN GLN LYS LEU LYS VAL VAL GLU SEQRES 11 A 411 ILE ASN PHE LEU CYS ILE HIS LYS LYS LEU ARG SER LYS SEQRES 12 A 411 ARG LEU THR PRO VAL LEU ILE LYS GLU ILE THR ARG ARG SEQRES 13 A 411 CYS TYR LEU ASN GLY ILE TYR GLN ALA ILE TYR THR ALA SEQRES 14 A 411 GLY VAL VAL LEU PRO THR PRO VAL SER SER CYS ARG TYR SEQRES 15 A 411 TYR HIS ARG PRO LEU ASP TRP LEU LYS LEU TYR GLU VAL SEQRES 16 A 411 GLY PHE SER PRO LEU PRO ALA GLY SER THR LYS ALA ARG SEQRES 17 A 411 GLN ILE THR LYS ASN HIS LEU PRO SER THR THR SER THR SEQRES 18 A 411 PRO GLY LEU ARG PRO MET GLU PRO LYS ASP ILE ASP THR SEQRES 19 A 411 VAL HIS ASP LEU LEU GLN ARG TYR LEU SER ARG PHE ALA SEQRES 20 A 411 LEU ASN GLN ALA PHE THR ARG GLU GLU VAL ASP HIS TRP SEQRES 21 A 411 LEU VAL HIS LYS PRO GLU THR VAL LYS GLU GLN VAL VAL SEQRES 22 A 411 TRP ALA TYR VAL VAL GLU ASP PRO GLU THR HIS LYS ILE SEQRES 23 A 411 THR ASP PHE PHE SER PHE TYR ASN LEU GLU SER THR VAL SEQRES 24 A 411 ILE GLN ASN PRO LYS HIS ASP ASN VAL ARG ALA ALA TYR SEQRES 25 A 411 LEU TYR TYR TYR ALA THR GLU THR ALA PHE THR ASN ASN SEQRES 26 A 411 MET LYS ALA LEU LYS GLU ARG LEU LEU MET LEU MET ASN SEQRES 27 A 411 ASP ALA LEU ILE LEU ALA LYS LYS ALA HIS PHE ASP VAL SEQRES 28 A 411 PHE ASN ALA LEU THR LEU HIS ASP ASN PRO LEU PHE LEU SEQRES 29 A 411 GLU GLN LEU LYS PHE GLY ALA GLY ASP GLY GLN LEU HIS SEQRES 30 A 411 PHE TYR LEU TYR ASN TYR ARG THR ALA PRO VAL PRO GLY SEQRES 31 A 411 GLY VAL ASN GLU LYS ASN LEU PRO ASP GLU LYS ARG MET SEQRES 32 A 411 GLY GLY VAL GLY ILE VAL MET LEU HET CL A1493 1 HET 2XQ A1494 33 HET MYA A1495 63 HETNAM CL CHLORIDE ION HETNAM 2XQ 3-[[3-METHYL-2-[[2,3,4-TRIS(FLUORANYL)PHENOXY]METHYL]- HETNAM 2 2XQ 1-BENZOFURAN-4-YL]OXY]-N-(PYRIDIN-3-YLMETHYL)PROPAN-1- HETNAM 3 2XQ AMINE HETNAM MYA TETRADECANOYL-COA HETSYN MYA MYRISTOYL-COA FORMUL 2 CL CL 1- FORMUL 3 2XQ C25 H23 F3 N2 O3 FORMUL 4 MYA C35 H62 N7 O17 P3 S FORMUL 5 HOH *412(H2 O) HELIX 1 1 ASN A 132 TYR A 147 1 16 HELIX 2 2 SER A 160 MET A 169 1 10 HELIX 3 3 LYS A 174 GLU A 176 5 3 HELIX 4 4 LYS A 219 ARG A 222 5 4 HELIX 5 5 ARG A 225 LEU A 240 1 16 HELIX 6 6 ASP A 269 VAL A 276 1 8 HELIX 7 7 THR A 286 HIS A 295 1 10 HELIX 8 8 GLU A 309 LYS A 311 5 3 HELIX 9 9 ASP A 312 ARG A 326 1 15 HELIX 10 10 THR A 334 VAL A 343 1 10 HELIX 11 11 THR A 401 ASN A 405 5 5 HELIX 12 12 ASN A 406 ALA A 428 1 23 HELIX 13 13 ASP A 440 PHE A 444 5 5 HELIX 14 14 ASP A 480 MET A 484 5 5 SHEET 1 AA 2 GLY A 102 PRO A 103 0 SHEET 2 AA 2 TYR A 464 ARG A 465 -1 O ARG A 465 N GLY A 102 SHEET 1 AB 5 PHE A 123 THR A 127 0 SHEET 2 AB 5 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AB 5 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AB 5 LEU A 329 GLN A 331 -1 O ASN A 330 N ASN A 201 SHEET 5 AB 5 VAL A 487 GLY A 488 -1 O GLY A 488 N GLN A 331 SHEET 1 AC12 PHE A 123 THR A 127 0 SHEET 2 AC12 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AC12 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AC12 GLN A 205 ILE A 217 -1 O GLN A 205 N VAL A 202 SHEET 5 AC12 ALA A 246 ALA A 250 1 O ILE A 247 N ILE A 212 SHEET 6 AC12 GLY A 451 TYR A 462 -1 O HIS A 458 N ALA A 250 SHEET 7 AC12 SER A 259 PRO A 267 -1 O SER A 259 N PHE A 459 SHEET 8 AC12 VAL A 432 LEU A 436 -1 O PHE A 433 N ARG A 266 SHEET 9 AC12 ASN A 388 THR A 399 1 O ALA A 392 N ASN A 434 SHEET 10 AC12 ILE A 367 VAL A 380 -1 O PHE A 370 N ALA A 398 SHEET 11 AC12 VAL A 354 GLU A 360 -1 O TRP A 355 N PHE A 373 SHEET 12 AC12 LEU A 305 PRO A 307 -1 O ARG A 306 N VAL A 358 SHEET 1 AD11 PHE A 123 THR A 127 0 SHEET 2 AD11 HIS A 178 ALA A 183 -1 O GLY A 180 N ALA A 126 SHEET 3 AD11 LEU A 189 VAL A 202 -1 N VAL A 190 O VAL A 181 SHEET 4 AD11 GLN A 205 ILE A 217 -1 O GLN A 205 N VAL A 202 SHEET 5 AD11 ALA A 246 ALA A 250 1 O ILE A 247 N ILE A 212 SHEET 6 AD11 GLY A 451 TYR A 462 -1 O HIS A 458 N ALA A 250 SHEET 7 AD11 SER A 259 PRO A 267 -1 O SER A 259 N PHE A 459 SHEET 8 AD11 VAL A 432 LEU A 436 -1 O PHE A 433 N ARG A 266 SHEET 9 AD11 ASN A 388 THR A 399 1 O ALA A 392 N ASN A 434 SHEET 10 AD11 ILE A 367 VAL A 380 -1 O PHE A 370 N ALA A 398 SHEET 11 AD11 PHE A 155 ARG A 158 -1 O ARG A 156 N THR A 379 SITE 1 AC1 1 2XQ A1494 SITE 1 AC2 17 TYR A 147 PHE A 155 PHE A 157 TYR A 159 SITE 2 AC2 17 PHE A 214 TYR A 264 HIS A 265 LEU A 273 SITE 3 AC2 17 PHE A 278 LEU A 376 VAL A 389 TYR A 393 SITE 4 AC2 17 VAL A 432 ASN A 434 ALA A 435 LEU A 492 SITE 5 AC2 17 CL A1493 SITE 1 AC3 37 TYR A 147 VAL A 148 ASN A 213 PHE A 214 SITE 2 AC3 37 LEU A 215 CYS A 216 ILE A 217 ARG A 222 SITE 3 AC3 37 SER A 223 LYS A 224 ARG A 225 LEU A 226 SITE 4 AC3 37 THR A 227 ILE A 231 THR A 235 CYS A 238 SITE 5 AC3 37 ILE A 243 TYR A 244 GLN A 245 ALA A 246 SITE 6 AC3 37 TYR A 248 THR A 249 VAL A 252 LEU A 254 SITE 7 AC3 37 TYR A 462 HOH A2176 HOH A2177 HOH A2178 SITE 8 AC3 37 HOH A2265 HOH A2403 HOH A2405 HOH A2406 SITE 9 AC3 37 HOH A2407 HOH A2408 HOH A2409 HOH A2410 SITE 10 AC3 37 HOH A2411 CRYST1 55.430 57.011 143.388 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006974 0.00000