data_4CB5 # _entry.id 4CB5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4CB5 pdb_00004cb5 10.2210/pdb4cb5/pdb PDBE EBI-58695 ? ? WWPDB D_1290058695 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4CB4 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF INFLUENZA A H5N1 PB2 CAP-BINDING DOMAIN WITH BOUND M7GTP' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CB5 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-10-10 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pautus, S.' 1 'Sehr, P.' 2 'Lewis, J.' 3 'Fortune, A.' 4 'Wolkerstorfer, A.' 5 'Szolar, O.' 6 'Gulligay, D.' 7 'Lunardi, T.' 8 'Decout, J.L.' 9 'Cusack, S.' 10 # _citation.id primary _citation.title 'New 7-Methyl-Guanosine Derivatives Targeting the Influenza Polymerase Pb2 CAP-Binding Domain' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 56 _citation.page_first 8915 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24134208 _citation.pdbx_database_id_DOI 10.1021/JM401369Y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pautus, S.' 1 ? primary 'Sehr, P.' 2 ? primary 'Lewis, J.' 3 ? primary 'Fortune, A.' 4 ? primary 'Wolkerstorfer, A.' 5 ? primary 'Szolar, O.' 6 ? primary 'Gulligay, D.' 7 ? primary 'Lunardi, T.' 8 ? primary 'Decout, J.L.' 9 ? primary 'Cusack, S.' 10 ? # _cell.entry_id 4CB5 _cell.length_a 82.170 _cell.length_b 82.170 _cell.length_c 54.840 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CB5 _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'POLYMERASE BASIC SUBUNIT 2' 18887.951 1 ? ? 'CAP-BINDING DOMAIN, RESIDUES 318-483' ? 2 non-polymer syn '9-N-(3-CARBOXY-4-HYDROXYPHENYL)KETOMETHYL-7-N-METHYLGUANINE' 343.317 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 4 water nat water 18.015 73 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'H5N1 INFLUENZA POLYMERASE PB2 SUBUNIT' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GRISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAE AIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEPIDNVMGMIGILPDMTPSTEMSLR GVRVSKM ; _entity_poly.pdbx_seq_one_letter_code_can ;GRISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGRDEQSIAE AIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEPIDNVMGMIGILPDMTPSTEMSLR GVRVSKM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ARG n 1 3 ILE n 1 4 SER n 1 5 SER n 1 6 SER n 1 7 PHE n 1 8 SER n 1 9 PHE n 1 10 GLY n 1 11 GLY n 1 12 PHE n 1 13 THR n 1 14 PHE n 1 15 LYS n 1 16 ARG n 1 17 THR n 1 18 SER n 1 19 GLY n 1 20 SER n 1 21 SER n 1 22 VAL n 1 23 LYS n 1 24 LYS n 1 25 GLU n 1 26 GLU n 1 27 GLU n 1 28 VAL n 1 29 LEU n 1 30 THR n 1 31 GLY n 1 32 ASN n 1 33 LEU n 1 34 GLN n 1 35 THR n 1 36 LEU n 1 37 LYS n 1 38 ILE n 1 39 ARG n 1 40 VAL n 1 41 HIS n 1 42 GLU n 1 43 GLY n 1 44 TYR n 1 45 GLU n 1 46 GLU n 1 47 PHE n 1 48 THR n 1 49 MET n 1 50 VAL n 1 51 GLY n 1 52 ARG n 1 53 ARG n 1 54 ALA n 1 55 THR n 1 56 ALA n 1 57 ILE n 1 58 LEU n 1 59 ARG n 1 60 LYS n 1 61 ALA n 1 62 THR n 1 63 ARG n 1 64 ARG n 1 65 LEU n 1 66 ILE n 1 67 GLN n 1 68 LEU n 1 69 ILE n 1 70 VAL n 1 71 SER n 1 72 GLY n 1 73 ARG n 1 74 ASP n 1 75 GLU n 1 76 GLN n 1 77 SER n 1 78 ILE n 1 79 ALA n 1 80 GLU n 1 81 ALA n 1 82 ILE n 1 83 ILE n 1 84 VAL n 1 85 ALA n 1 86 MET n 1 87 VAL n 1 88 PHE n 1 89 SER n 1 90 GLN n 1 91 GLU n 1 92 ASP n 1 93 CYS n 1 94 MET n 1 95 ILE n 1 96 LYS n 1 97 ALA n 1 98 VAL n 1 99 ARG n 1 100 GLY n 1 101 ASP n 1 102 LEU n 1 103 ASN n 1 104 PHE n 1 105 VAL n 1 106 ASN n 1 107 ARG n 1 108 ALA n 1 109 ASN n 1 110 GLN n 1 111 ARG n 1 112 LEU n 1 113 ASN n 1 114 PRO n 1 115 MET n 1 116 HIS n 1 117 GLN n 1 118 LEU n 1 119 LEU n 1 120 ARG n 1 121 HIS n 1 122 PHE n 1 123 GLN n 1 124 LYS n 1 125 ASP n 1 126 ALA n 1 127 LYS n 1 128 VAL n 1 129 LEU n 1 130 PHE n 1 131 GLN n 1 132 ASN n 1 133 TRP n 1 134 GLY n 1 135 ILE n 1 136 GLU n 1 137 PRO n 1 138 ILE n 1 139 ASP n 1 140 ASN n 1 141 VAL n 1 142 MET n 1 143 GLY n 1 144 MET n 1 145 ILE n 1 146 GLY n 1 147 ILE n 1 148 LEU n 1 149 PRO n 1 150 ASP n 1 151 MET n 1 152 THR n 1 153 PRO n 1 154 SER n 1 155 THR n 1 156 GLU n 1 157 MET n 1 158 SER n 1 159 LEU n 1 160 ARG n 1 161 GLY n 1 162 VAL n 1 163 ARG n 1 164 VAL n 1 165 SER n 1 166 LYS n 1 167 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Influenza A virus (A/duck/Shantou/4610/2003(H5N1))' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 365107 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'CODONPLUS RIL' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-M11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2LG68_9INFA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q2LG68 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4CB5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 167 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2LG68 _struct_ref_seq.db_align_beg 318 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 483 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 318 _struct_ref_seq.pdbx_auth_seq_align_end 483 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4CB5 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q2LG68 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 317 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 93G non-polymer . '9-N-(3-CARBOXY-4-HYDROXYPHENYL)KETOMETHYL-7-N-METHYLGUANINE' ? 'C15 H15 N6 O4 1' 343.317 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4CB5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.8 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.3 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1M SODIUM ACETATE PH 4.3, 2.4M NACL' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-05-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CB5 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.50 _reflns.number_obs 33681 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.68 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.56 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs 0.48 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.90 _reflns_shell.pdbx_redundancy 3.69 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CB5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 32042 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.48 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.48 _refine.ls_R_factor_obs 0.12822 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.12672 _refine.ls_R_factor_R_free 0.15850 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1639 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free 0.970 _refine.B_iso_mean 16.541 _refine.aniso_B[1][1] -0.01 _refine.aniso_B[2][2] -0.01 _refine.aniso_B[3][3] 0.04 _refine.aniso_B[1][2] -0.01 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model 'PDB ENTRY 2VQZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.052 _refine.pdbx_overall_ESU_R_Free 0.051 _refine.overall_SU_ML 0.024 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.334 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1285 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 1386 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 43.48 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.019 ? 1365 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1356 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.913 1.982 ? 1840 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.913 3.000 ? 3105 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.624 5.000 ? 169 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.631 23.000 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.511 15.000 ? 263 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.019 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.130 0.200 ? 203 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1548 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 323 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 4.173 3.000 ? 2721 'X-RAY DIFFRACTION' ? r_sphericity_free 7.812 5.000 ? 34 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4.384 5.000 ? 2739 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 2292 _refine_ls_shell.R_factor_R_work 0.089 _refine_ls_shell.percent_reflns_obs 98.82 _refine_ls_shell.R_factor_R_free 0.149 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4CB5 _struct.title 'Structure of Influenza A H5N1 PB2 cap-binding domain with bound cap analogue (compound 8f)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CB5 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, CAP-BINDING INHIBITORS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 74 ? GLN A 90 ? ASP A 390 GLN A 406 1 ? 17 HELX_P HELX_P2 2 GLU A 91 ? ALA A 97 ? GLU A 407 ALA A 413 1 ? 7 HELX_P HELX_P3 3 ASN A 106 ? GLN A 110 ? ASN A 422 GLN A 426 5 ? 5 HELX_P HELX_P4 4 ASN A 113 ? ASP A 125 ? ASN A 429 ASP A 441 1 ? 13 HELX_P HELX_P5 5 ALA A 126 ? GLY A 134 ? ALA A 442 GLY A 450 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 8 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 7 ? PHE A 9 ? PHE A 323 PHE A 325 AA 2 PHE A 12 ? GLY A 19 ? PHE A 328 GLY A 335 AA 3 GLU A 45 ? VAL A 50 ? GLU A 361 VAL A 366 AA 4 ALA A 54 ? ALA A 61 ? ALA A 370 ALA A 377 AA 5 ARG A 64 ? GLY A 72 ? ARG A 380 GLY A 388 AA 6 VAL A 162 ? SER A 165 ? VAL A 478 SER A 481 AA 7 MET A 144 ? ILE A 147 ? MET A 460 ILE A 463 AA 8 PRO A 153 ? SER A 154 ? PRO A 469 SER A 470 AB 1 VAL A 22 ? LEU A 29 ? VAL A 338 LEU A 345 AB 2 THR A 35 ? GLU A 42 ? THR A 351 GLU A 358 AC 1 ILE A 135 ? PRO A 137 ? ILE A 451 PRO A 453 AC 2 MET A 157 ? LEU A 159 ? MET A 473 LEU A 475 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 9 ? N PHE A 325 O PHE A 12 ? O PHE A 328 AA 2 3 N THR A 17 ? N THR A 333 O GLU A 46 ? O GLU A 362 AA 3 4 N MET A 49 ? N MET A 365 O ALA A 56 ? O ALA A 372 AA 4 5 N ALA A 61 ? N ALA A 377 O ARG A 64 ? O ARG A 380 AA 5 6 N VAL A 70 ? N VAL A 386 O ARG A 163 ? O ARG A 479 AA 6 7 N VAL A 164 ? N VAL A 480 O ILE A 145 ? O ILE A 461 AA 7 8 N GLY A 146 ? N GLY A 462 O SER A 154 ? O SER A 470 AB 1 2 N VAL A 28 ? N VAL A 344 O LEU A 36 ? O LEU A 352 AC 1 2 N GLU A 136 ? N GLU A 452 O SER A 158 ? O SER A 474 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 93G 1484 ? 9 'BINDING SITE FOR RESIDUE 93G A 1484' AC2 Software A CL 1485 ? 4 'BINDING SITE FOR RESIDUE CL A 1485' AC3 Software A CL 1486 ? 2 'BINDING SITE FOR RESIDUE CL A 1486' AC4 Software A CL 1487 ? 5 'BINDING SITE FOR RESIDUE CL A 1487' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 PHE A 7 ? PHE A 323 . ? 1_555 ? 2 AC1 9 SER A 8 ? SER A 324 . ? 1_555 ? 3 AC1 9 SER A 21 ? SER A 337 . ? 1_555 ? 4 AC1 9 HIS A 41 ? HIS A 357 . ? 1_555 ? 5 AC1 9 GLU A 45 ? GLU A 361 . ? 1_555 ? 6 AC1 9 PHE A 47 ? PHE A 363 . ? 1_555 ? 7 AC1 9 LYS A 60 ? LYS A 376 . ? 1_555 ? 8 AC1 9 PHE A 88 ? PHE A 404 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH A 2002 . ? 1_555 ? 10 AC2 4 ALA A 61 ? ALA A 377 . ? 1_555 ? 11 AC2 4 THR A 62 ? THR A 378 . ? 1_555 ? 12 AC2 4 GLN A 76 ? GLN A 392 . ? 4_455 ? 13 AC2 4 GLU A 80 ? GLU A 396 . ? 4_455 ? 14 AC3 2 ARG A 39 ? ARG A 355 . ? 1_555 ? 15 AC3 2 MET A 115 ? MET A 431 . ? 1_555 ? 16 AC4 5 GLY A 10 ? GLY A 326 . ? 4_455 ? 17 AC4 5 ARG A 64 ? ARG A 380 . ? 1_555 ? 18 AC4 5 ILE A 66 ? ILE A 382 . ? 1_555 ? 19 AC4 5 GLN A 123 ? GLN A 439 . ? 4_455 ? 20 AC4 5 HOH F . ? HOH A 2056 . ? 4_455 ? # _database_PDB_matrix.entry_id 4CB5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4CB5 _atom_sites.fract_transf_matrix[1][1] 0.012170 _atom_sites.fract_transf_matrix[1][2] 0.007026 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014053 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018235 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 317 ? ? ? A . n A 1 2 ARG 2 318 ? ? ? A . n A 1 3 ILE 3 319 ? ? ? A . n A 1 4 SER 4 320 ? ? ? A . n A 1 5 SER 5 321 ? ? ? A . n A 1 6 SER 6 322 322 SER SER A . n A 1 7 PHE 7 323 323 PHE PHE A . n A 1 8 SER 8 324 324 SER SER A . n A 1 9 PHE 9 325 325 PHE PHE A . n A 1 10 GLY 10 326 326 GLY GLY A . n A 1 11 GLY 11 327 327 GLY GLY A . n A 1 12 PHE 12 328 328 PHE PHE A . n A 1 13 THR 13 329 329 THR THR A . n A 1 14 PHE 14 330 330 PHE PHE A . n A 1 15 LYS 15 331 331 LYS LYS A . n A 1 16 ARG 16 332 332 ARG ARG A . n A 1 17 THR 17 333 333 THR THR A . n A 1 18 SER 18 334 334 SER SER A . n A 1 19 GLY 19 335 335 GLY GLY A . n A 1 20 SER 20 336 336 SER SER A . n A 1 21 SER 21 337 337 SER SER A . n A 1 22 VAL 22 338 338 VAL VAL A . n A 1 23 LYS 23 339 339 LYS LYS A . n A 1 24 LYS 24 340 340 LYS LYS A . n A 1 25 GLU 25 341 341 GLU GLU A . n A 1 26 GLU 26 342 342 GLU GLU A . n A 1 27 GLU 27 343 343 GLU GLU A . n A 1 28 VAL 28 344 344 VAL VAL A . n A 1 29 LEU 29 345 345 LEU LEU A . n A 1 30 THR 30 346 346 THR THR A . n A 1 31 GLY 31 347 347 GLY GLY A . n A 1 32 ASN 32 348 348 ASN ASN A . n A 1 33 LEU 33 349 349 LEU LEU A . n A 1 34 GLN 34 350 350 GLN GLN A . n A 1 35 THR 35 351 351 THR THR A . n A 1 36 LEU 36 352 352 LEU LEU A . n A 1 37 LYS 37 353 353 LYS LYS A . n A 1 38 ILE 38 354 354 ILE ILE A . n A 1 39 ARG 39 355 355 ARG ARG A . n A 1 40 VAL 40 356 356 VAL VAL A . n A 1 41 HIS 41 357 357 HIS HIS A . n A 1 42 GLU 42 358 358 GLU GLU A . n A 1 43 GLY 43 359 359 GLY GLY A . n A 1 44 TYR 44 360 360 TYR TYR A . n A 1 45 GLU 45 361 361 GLU GLU A . n A 1 46 GLU 46 362 362 GLU GLU A . n A 1 47 PHE 47 363 363 PHE PHE A . n A 1 48 THR 48 364 364 THR THR A . n A 1 49 MET 49 365 365 MET MET A . n A 1 50 VAL 50 366 366 VAL VAL A . n A 1 51 GLY 51 367 367 GLY GLY A . n A 1 52 ARG 52 368 368 ARG ARG A . n A 1 53 ARG 53 369 369 ARG ARG A . n A 1 54 ALA 54 370 370 ALA ALA A . n A 1 55 THR 55 371 371 THR THR A . n A 1 56 ALA 56 372 372 ALA ALA A . n A 1 57 ILE 57 373 373 ILE ILE A . n A 1 58 LEU 58 374 374 LEU LEU A . n A 1 59 ARG 59 375 375 ARG ARG A . n A 1 60 LYS 60 376 376 LYS LYS A . n A 1 61 ALA 61 377 377 ALA ALA A . n A 1 62 THR 62 378 378 THR THR A . n A 1 63 ARG 63 379 379 ARG ARG A . n A 1 64 ARG 64 380 380 ARG ARG A . n A 1 65 LEU 65 381 381 LEU LEU A . n A 1 66 ILE 66 382 382 ILE ILE A . n A 1 67 GLN 67 383 383 GLN GLN A . n A 1 68 LEU 68 384 384 LEU LEU A . n A 1 69 ILE 69 385 385 ILE ILE A . n A 1 70 VAL 70 386 386 VAL VAL A . n A 1 71 SER 71 387 387 SER SER A . n A 1 72 GLY 72 388 388 GLY GLY A . n A 1 73 ARG 73 389 389 ARG ARG A . n A 1 74 ASP 74 390 390 ASP ASP A . n A 1 75 GLU 75 391 391 GLU GLU A . n A 1 76 GLN 76 392 392 GLN GLN A . n A 1 77 SER 77 393 393 SER SER A . n A 1 78 ILE 78 394 394 ILE ILE A . n A 1 79 ALA 79 395 395 ALA ALA A . n A 1 80 GLU 80 396 396 GLU GLU A . n A 1 81 ALA 81 397 397 ALA ALA A . n A 1 82 ILE 82 398 398 ILE ILE A . n A 1 83 ILE 83 399 399 ILE ILE A . n A 1 84 VAL 84 400 400 VAL VAL A . n A 1 85 ALA 85 401 401 ALA ALA A . n A 1 86 MET 86 402 402 MET MET A . n A 1 87 VAL 87 403 403 VAL VAL A . n A 1 88 PHE 88 404 404 PHE PHE A . n A 1 89 SER 89 405 405 SER SER A . n A 1 90 GLN 90 406 406 GLN GLN A . n A 1 91 GLU 91 407 407 GLU GLU A . n A 1 92 ASP 92 408 408 ASP ASP A . n A 1 93 CYS 93 409 409 CYS CYS A . n A 1 94 MET 94 410 410 MET MET A . n A 1 95 ILE 95 411 411 ILE ILE A . n A 1 96 LYS 96 412 412 LYS LYS A . n A 1 97 ALA 97 413 413 ALA ALA A . n A 1 98 VAL 98 414 414 VAL VAL A . n A 1 99 ARG 99 415 415 ARG ARG A . n A 1 100 GLY 100 416 416 GLY GLY A . n A 1 101 ASP 101 417 417 ASP ASP A . n A 1 102 LEU 102 418 418 LEU LEU A . n A 1 103 ASN 103 419 419 ASN ASN A . n A 1 104 PHE 104 420 420 PHE PHE A . n A 1 105 VAL 105 421 421 VAL VAL A . n A 1 106 ASN 106 422 422 ASN ASN A . n A 1 107 ARG 107 423 423 ARG ARG A . n A 1 108 ALA 108 424 424 ALA ALA A . n A 1 109 ASN 109 425 425 ASN ASN A . n A 1 110 GLN 110 426 426 GLN GLN A . n A 1 111 ARG 111 427 427 ARG ARG A . n A 1 112 LEU 112 428 428 LEU LEU A . n A 1 113 ASN 113 429 429 ASN ASN A . n A 1 114 PRO 114 430 430 PRO PRO A . n A 1 115 MET 115 431 431 MET MET A . n A 1 116 HIS 116 432 432 HIS HIS A . n A 1 117 GLN 117 433 433 GLN GLN A . n A 1 118 LEU 118 434 434 LEU LEU A . n A 1 119 LEU 119 435 435 LEU LEU A . n A 1 120 ARG 120 436 436 ARG ARG A . n A 1 121 HIS 121 437 437 HIS HIS A . n A 1 122 PHE 122 438 438 PHE PHE A . n A 1 123 GLN 123 439 439 GLN GLN A . n A 1 124 LYS 124 440 440 LYS LYS A . n A 1 125 ASP 125 441 441 ASP ASP A . n A 1 126 ALA 126 442 442 ALA ALA A . n A 1 127 LYS 127 443 443 LYS LYS A . n A 1 128 VAL 128 444 444 VAL VAL A . n A 1 129 LEU 129 445 445 LEU LEU A . n A 1 130 PHE 130 446 446 PHE PHE A . n A 1 131 GLN 131 447 447 GLN GLN A . n A 1 132 ASN 132 448 448 ASN ASN A . n A 1 133 TRP 133 449 449 TRP TRP A . n A 1 134 GLY 134 450 450 GLY GLY A . n A 1 135 ILE 135 451 451 ILE ILE A . n A 1 136 GLU 136 452 452 GLU GLU A . n A 1 137 PRO 137 453 453 PRO PRO A . n A 1 138 ILE 138 454 454 ILE ILE A . n A 1 139 ASP 139 455 455 ASP ASP A . n A 1 140 ASN 140 456 456 ASN ASN A . n A 1 141 VAL 141 457 457 VAL VAL A . n A 1 142 MET 142 458 458 MET MET A . n A 1 143 GLY 143 459 459 GLY GLY A . n A 1 144 MET 144 460 460 MET MET A . n A 1 145 ILE 145 461 461 ILE ILE A . n A 1 146 GLY 146 462 462 GLY GLY A . n A 1 147 ILE 147 463 463 ILE ILE A . n A 1 148 LEU 148 464 464 LEU LEU A . n A 1 149 PRO 149 465 465 PRO PRO A . n A 1 150 ASP 150 466 466 ASP ASP A . n A 1 151 MET 151 467 467 MET MET A . n A 1 152 THR 152 468 468 THR THR A . n A 1 153 PRO 153 469 469 PRO PRO A . n A 1 154 SER 154 470 470 SER SER A . n A 1 155 THR 155 471 471 THR THR A . n A 1 156 GLU 156 472 472 GLU GLU A . n A 1 157 MET 157 473 473 MET MET A . n A 1 158 SER 158 474 474 SER SER A . n A 1 159 LEU 159 475 475 LEU LEU A . n A 1 160 ARG 160 476 476 ARG ARG A . n A 1 161 GLY 161 477 477 GLY GLY A . n A 1 162 VAL 162 478 478 VAL VAL A . n A 1 163 ARG 163 479 479 ARG ARG A . n A 1 164 VAL 164 480 480 VAL VAL A . n A 1 165 SER 165 481 481 SER SER A . n A 1 166 LYS 166 482 482 LYS LYS A . n A 1 167 MET 167 483 483 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 93G 1 1484 1484 93G 93G A . C 3 CL 1 1485 1485 CL CL A . D 3 CL 1 1486 1486 CL CL A . E 3 CL 1 1487 1487 CL CL A . F 4 HOH 1 2001 2001 HOH HOH A . F 4 HOH 2 2002 2002 HOH HOH A . F 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 4 2004 2004 HOH HOH A . F 4 HOH 5 2005 2005 HOH HOH A . F 4 HOH 6 2006 2006 HOH HOH A . F 4 HOH 7 2007 2007 HOH HOH A . F 4 HOH 8 2008 2008 HOH HOH A . F 4 HOH 9 2009 2009 HOH HOH A . F 4 HOH 10 2010 2010 HOH HOH A . F 4 HOH 11 2011 2011 HOH HOH A . F 4 HOH 12 2012 2012 HOH HOH A . F 4 HOH 13 2013 2013 HOH HOH A . F 4 HOH 14 2014 2014 HOH HOH A . F 4 HOH 15 2015 2015 HOH HOH A . F 4 HOH 16 2016 2016 HOH HOH A . F 4 HOH 17 2017 2017 HOH HOH A . F 4 HOH 18 2018 2018 HOH HOH A . F 4 HOH 19 2019 2019 HOH HOH A . F 4 HOH 20 2020 2020 HOH HOH A . F 4 HOH 21 2021 2021 HOH HOH A . F 4 HOH 22 2022 2022 HOH HOH A . F 4 HOH 23 2023 2023 HOH HOH A . F 4 HOH 24 2024 2024 HOH HOH A . F 4 HOH 25 2025 2025 HOH HOH A . F 4 HOH 26 2026 2026 HOH HOH A . F 4 HOH 27 2027 2027 HOH HOH A . F 4 HOH 28 2028 2028 HOH HOH A . F 4 HOH 29 2029 2029 HOH HOH A . F 4 HOH 30 2030 2030 HOH HOH A . F 4 HOH 31 2031 2031 HOH HOH A . F 4 HOH 32 2032 2032 HOH HOH A . F 4 HOH 33 2033 2033 HOH HOH A . F 4 HOH 34 2034 2034 HOH HOH A . F 4 HOH 35 2035 2035 HOH HOH A . F 4 HOH 36 2036 2036 HOH HOH A . F 4 HOH 37 2037 2037 HOH HOH A . F 4 HOH 38 2038 2038 HOH HOH A . F 4 HOH 39 2039 2039 HOH HOH A . F 4 HOH 40 2040 2040 HOH HOH A . F 4 HOH 41 2041 2041 HOH HOH A . F 4 HOH 42 2042 2042 HOH HOH A . F 4 HOH 43 2043 2043 HOH HOH A . F 4 HOH 44 2044 2044 HOH HOH A . F 4 HOH 45 2045 2045 HOH HOH A . F 4 HOH 46 2046 2046 HOH HOH A . F 4 HOH 47 2047 2047 HOH HOH A . F 4 HOH 48 2048 2048 HOH HOH A . F 4 HOH 49 2049 2049 HOH HOH A . F 4 HOH 50 2050 2050 HOH HOH A . F 4 HOH 51 2051 2051 HOH HOH A . F 4 HOH 52 2052 2052 HOH HOH A . F 4 HOH 53 2053 2053 HOH HOH A . F 4 HOH 54 2054 2054 HOH HOH A . F 4 HOH 55 2055 2055 HOH HOH A . F 4 HOH 56 2056 2056 HOH HOH A . F 4 HOH 57 2057 2057 HOH HOH A . F 4 HOH 58 2058 2058 HOH HOH A . F 4 HOH 59 2059 2059 HOH HOH A . F 4 HOH 60 2060 2060 HOH HOH A . F 4 HOH 61 2061 2061 HOH HOH A . F 4 HOH 62 2062 2062 HOH HOH A . F 4 HOH 63 2063 2063 HOH HOH A . F 4 HOH 64 2064 2064 HOH HOH A . F 4 HOH 65 2065 2065 HOH HOH A . F 4 HOH 66 2066 2066 HOH HOH A . F 4 HOH 67 2067 2067 HOH HOH A . F 4 HOH 68 2068 2068 HOH HOH A . F 4 HOH 69 2069 2069 HOH HOH A . F 4 HOH 70 2070 2070 HOH HOH A . F 4 HOH 71 2071 2071 HOH HOH A . F 4 HOH 72 2072 2072 HOH HOH A . F 4 HOH 73 2073 2073 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-30 2 'Structure model' 1 1 2013-12-25 3 'Structure model' 1 2 2018-04-11 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity_src_gen.gene_src_strain' 2 3 'Structure model' '_entity_src_gen.pdbx_gene_src_scientific_name' 3 3 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 4 3 'Structure model' '_entity_src_gen.pdbx_host_org_strain' 5 4 'Structure model' '_database_2.pdbx_DOI' 6 4 'Structure model' '_database_2.pdbx_database_accession' 7 4 'Structure model' '_pdbx_database_status.status_code_sf' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.7.0029 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4CB5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'CHLORIDE ION (CL): FROM CRYSTALLISATION MEDIUM' _pdbx_entry_details.sequence_details 'EXTRA N-TERMINAL GLYCINE AFTER HIS-TAG CLEAVAGE' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 332 ? ? CZ A ARG 332 ? ? NH1 A ARG 332 ? ? 123.97 120.30 3.67 0.50 N 2 1 NE A ARG 332 ? ? CZ A ARG 332 ? ? NH2 A ARG 332 ? ? 115.59 120.30 -4.71 0.50 N 3 1 CG A MET 365 ? ? SD A MET 365 ? ? CE A MET 365 ? ? 110.57 100.20 10.37 1.60 N 4 1 NE A ARG 379 ? ? CZ A ARG 379 ? ? NH1 A ARG 379 ? ? 124.07 120.30 3.77 0.50 N 5 1 NE A ARG 476 ? ? CZ A ARG 476 ? ? NH2 A ARG 476 ? ? 117.24 120.30 -3.06 0.50 N 6 1 NE A ARG 479 ? ? CZ A ARG 479 ? ? NH2 A ARG 479 ? ? 117.17 120.30 -3.13 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 377 ? ? -119.65 -169.78 2 1 ASP A 441 ? ? -160.16 117.40 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 317 ? A GLY 1 2 1 Y 1 A ARG 318 ? A ARG 2 3 1 Y 1 A ILE 319 ? A ILE 3 4 1 Y 1 A SER 320 ? A SER 4 5 1 Y 1 A SER 321 ? A SER 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 93G N1 N N N 1 93G C2 C N N 2 93G N2 N N N 3 93G N3 N N N 4 93G C4 C Y N 5 93G C5 C Y N 6 93G C6 C N N 7 93G O6 O N N 8 93G N7 N Y N 9 93G C8 C Y N 10 93G N9 N Y N 11 93G CG C Y N 12 93G OH O N N 13 93G CN C N N 14 93G NN N N N 15 93G ON O N N 16 93G CZ C Y N 17 93G "C1'" C N N 18 93G "C2'" C N N 19 93G "O2'" O N N 20 93G CD1 C Y N 21 93G CD2 C Y N 22 93G CE1 C Y N 23 93G CE2 C Y N 24 93G CM7 C N N 25 93G HN1 H N N 26 93G HN2 H N N 27 93G HN2A H N N 28 93G H8 H N N 29 93G HOH H N N 30 93G HNN H N N 31 93G HNNA H N N 32 93G "H1'" H N N 33 93G "H1'A" H N N 34 93G HD1 H N N 35 93G HD2 H N N 36 93G HE1 H N N 37 93G HM7 H N N 38 93G HM7A H N N 39 93G HM7B H N N 40 ALA N N N N 41 ALA CA C N S 42 ALA C C N N 43 ALA O O N N 44 ALA CB C N N 45 ALA OXT O N N 46 ALA H H N N 47 ALA H2 H N N 48 ALA HA H N N 49 ALA HB1 H N N 50 ALA HB2 H N N 51 ALA HB3 H N N 52 ALA HXT H N N 53 ARG N N N N 54 ARG CA C N S 55 ARG C C N N 56 ARG O O N N 57 ARG CB C N N 58 ARG CG C N N 59 ARG CD C N N 60 ARG NE N N N 61 ARG CZ C N N 62 ARG NH1 N N N 63 ARG NH2 N N N 64 ARG OXT O N N 65 ARG H H N N 66 ARG H2 H N N 67 ARG HA H N N 68 ARG HB2 H N N 69 ARG HB3 H N N 70 ARG HG2 H N N 71 ARG HG3 H N N 72 ARG HD2 H N N 73 ARG HD3 H N N 74 ARG HE H N N 75 ARG HH11 H N N 76 ARG HH12 H N N 77 ARG HH21 H N N 78 ARG HH22 H N N 79 ARG HXT H N N 80 ASN N N N N 81 ASN CA C N S 82 ASN C C N N 83 ASN O O N N 84 ASN CB C N N 85 ASN CG C N N 86 ASN OD1 O N N 87 ASN ND2 N N N 88 ASN OXT O N N 89 ASN H H N N 90 ASN H2 H N N 91 ASN HA H N N 92 ASN HB2 H N N 93 ASN HB3 H N N 94 ASN HD21 H N N 95 ASN HD22 H N N 96 ASN HXT H N N 97 ASP N N N N 98 ASP CA C N S 99 ASP C C N N 100 ASP O O N N 101 ASP CB C N N 102 ASP CG C N N 103 ASP OD1 O N N 104 ASP OD2 O N N 105 ASP OXT O N N 106 ASP H H N N 107 ASP H2 H N N 108 ASP HA H N N 109 ASP HB2 H N N 110 ASP HB3 H N N 111 ASP HD2 H N N 112 ASP HXT H N N 113 CL CL CL N N 114 CYS N N N N 115 CYS CA C N R 116 CYS C C N N 117 CYS O O N N 118 CYS CB C N N 119 CYS SG S N N 120 CYS OXT O N N 121 CYS H H N N 122 CYS H2 H N N 123 CYS HA H N N 124 CYS HB2 H N N 125 CYS HB3 H N N 126 CYS HG H N N 127 CYS HXT H N N 128 GLN N N N N 129 GLN CA C N S 130 GLN C C N N 131 GLN O O N N 132 GLN CB C N N 133 GLN CG C N N 134 GLN CD C N N 135 GLN OE1 O N N 136 GLN NE2 N N N 137 GLN OXT O N N 138 GLN H H N N 139 GLN H2 H N N 140 GLN HA H N N 141 GLN HB2 H N N 142 GLN HB3 H N N 143 GLN HG2 H N N 144 GLN HG3 H N N 145 GLN HE21 H N N 146 GLN HE22 H N N 147 GLN HXT H N N 148 GLU N N N N 149 GLU CA C N S 150 GLU C C N N 151 GLU O O N N 152 GLU CB C N N 153 GLU CG C N N 154 GLU CD C N N 155 GLU OE1 O N N 156 GLU OE2 O N N 157 GLU OXT O N N 158 GLU H H N N 159 GLU H2 H N N 160 GLU HA H N N 161 GLU HB2 H N N 162 GLU HB3 H N N 163 GLU HG2 H N N 164 GLU HG3 H N N 165 GLU HE2 H N N 166 GLU HXT H N N 167 GLY N N N N 168 GLY CA C N N 169 GLY C C N N 170 GLY O O N N 171 GLY OXT O N N 172 GLY H H N N 173 GLY H2 H N N 174 GLY HA2 H N N 175 GLY HA3 H N N 176 GLY HXT H N N 177 HIS N N N N 178 HIS CA C N S 179 HIS C C N N 180 HIS O O N N 181 HIS CB C N N 182 HIS CG C Y N 183 HIS ND1 N Y N 184 HIS CD2 C Y N 185 HIS CE1 C Y N 186 HIS NE2 N Y N 187 HIS OXT O N N 188 HIS H H N N 189 HIS H2 H N N 190 HIS HA H N N 191 HIS HB2 H N N 192 HIS HB3 H N N 193 HIS HD1 H N N 194 HIS HD2 H N N 195 HIS HE1 H N N 196 HIS HE2 H N N 197 HIS HXT H N N 198 HOH O O N N 199 HOH H1 H N N 200 HOH H2 H N N 201 ILE N N N N 202 ILE CA C N S 203 ILE C C N N 204 ILE O O N N 205 ILE CB C N S 206 ILE CG1 C N N 207 ILE CG2 C N N 208 ILE CD1 C N N 209 ILE OXT O N N 210 ILE H H N N 211 ILE H2 H N N 212 ILE HA H N N 213 ILE HB H N N 214 ILE HG12 H N N 215 ILE HG13 H N N 216 ILE HG21 H N N 217 ILE HG22 H N N 218 ILE HG23 H N N 219 ILE HD11 H N N 220 ILE HD12 H N N 221 ILE HD13 H N N 222 ILE HXT H N N 223 LEU N N N N 224 LEU CA C N S 225 LEU C C N N 226 LEU O O N N 227 LEU CB C N N 228 LEU CG C N N 229 LEU CD1 C N N 230 LEU CD2 C N N 231 LEU OXT O N N 232 LEU H H N N 233 LEU H2 H N N 234 LEU HA H N N 235 LEU HB2 H N N 236 LEU HB3 H N N 237 LEU HG H N N 238 LEU HD11 H N N 239 LEU HD12 H N N 240 LEU HD13 H N N 241 LEU HD21 H N N 242 LEU HD22 H N N 243 LEU HD23 H N N 244 LEU HXT H N N 245 LYS N N N N 246 LYS CA C N S 247 LYS C C N N 248 LYS O O N N 249 LYS CB C N N 250 LYS CG C N N 251 LYS CD C N N 252 LYS CE C N N 253 LYS NZ N N N 254 LYS OXT O N N 255 LYS H H N N 256 LYS H2 H N N 257 LYS HA H N N 258 LYS HB2 H N N 259 LYS HB3 H N N 260 LYS HG2 H N N 261 LYS HG3 H N N 262 LYS HD2 H N N 263 LYS HD3 H N N 264 LYS HE2 H N N 265 LYS HE3 H N N 266 LYS HZ1 H N N 267 LYS HZ2 H N N 268 LYS HZ3 H N N 269 LYS HXT H N N 270 MET N N N N 271 MET CA C N S 272 MET C C N N 273 MET O O N N 274 MET CB C N N 275 MET CG C N N 276 MET SD S N N 277 MET CE C N N 278 MET OXT O N N 279 MET H H N N 280 MET H2 H N N 281 MET HA H N N 282 MET HB2 H N N 283 MET HB3 H N N 284 MET HG2 H N N 285 MET HG3 H N N 286 MET HE1 H N N 287 MET HE2 H N N 288 MET HE3 H N N 289 MET HXT H N N 290 PHE N N N N 291 PHE CA C N S 292 PHE C C N N 293 PHE O O N N 294 PHE CB C N N 295 PHE CG C Y N 296 PHE CD1 C Y N 297 PHE CD2 C Y N 298 PHE CE1 C Y N 299 PHE CE2 C Y N 300 PHE CZ C Y N 301 PHE OXT O N N 302 PHE H H N N 303 PHE H2 H N N 304 PHE HA H N N 305 PHE HB2 H N N 306 PHE HB3 H N N 307 PHE HD1 H N N 308 PHE HD2 H N N 309 PHE HE1 H N N 310 PHE HE2 H N N 311 PHE HZ H N N 312 PHE HXT H N N 313 PRO N N N N 314 PRO CA C N S 315 PRO C C N N 316 PRO O O N N 317 PRO CB C N N 318 PRO CG C N N 319 PRO CD C N N 320 PRO OXT O N N 321 PRO H H N N 322 PRO HA H N N 323 PRO HB2 H N N 324 PRO HB3 H N N 325 PRO HG2 H N N 326 PRO HG3 H N N 327 PRO HD2 H N N 328 PRO HD3 H N N 329 PRO HXT H N N 330 SER N N N N 331 SER CA C N S 332 SER C C N N 333 SER O O N N 334 SER CB C N N 335 SER OG O N N 336 SER OXT O N N 337 SER H H N N 338 SER H2 H N N 339 SER HA H N N 340 SER HB2 H N N 341 SER HB3 H N N 342 SER HG H N N 343 SER HXT H N N 344 THR N N N N 345 THR CA C N S 346 THR C C N N 347 THR O O N N 348 THR CB C N R 349 THR OG1 O N N 350 THR CG2 C N N 351 THR OXT O N N 352 THR H H N N 353 THR H2 H N N 354 THR HA H N N 355 THR HB H N N 356 THR HG1 H N N 357 THR HG21 H N N 358 THR HG22 H N N 359 THR HG23 H N N 360 THR HXT H N N 361 TRP N N N N 362 TRP CA C N S 363 TRP C C N N 364 TRP O O N N 365 TRP CB C N N 366 TRP CG C Y N 367 TRP CD1 C Y N 368 TRP CD2 C Y N 369 TRP NE1 N Y N 370 TRP CE2 C Y N 371 TRP CE3 C Y N 372 TRP CZ2 C Y N 373 TRP CZ3 C Y N 374 TRP CH2 C Y N 375 TRP OXT O N N 376 TRP H H N N 377 TRP H2 H N N 378 TRP HA H N N 379 TRP HB2 H N N 380 TRP HB3 H N N 381 TRP HD1 H N N 382 TRP HE1 H N N 383 TRP HE3 H N N 384 TRP HZ2 H N N 385 TRP HZ3 H N N 386 TRP HH2 H N N 387 TRP HXT H N N 388 TYR N N N N 389 TYR CA C N S 390 TYR C C N N 391 TYR O O N N 392 TYR CB C N N 393 TYR CG C Y N 394 TYR CD1 C Y N 395 TYR CD2 C Y N 396 TYR CE1 C Y N 397 TYR CE2 C Y N 398 TYR CZ C Y N 399 TYR OH O N N 400 TYR OXT O N N 401 TYR H H N N 402 TYR H2 H N N 403 TYR HA H N N 404 TYR HB2 H N N 405 TYR HB3 H N N 406 TYR HD1 H N N 407 TYR HD2 H N N 408 TYR HE1 H N N 409 TYR HE2 H N N 410 TYR HH H N N 411 TYR HXT H N N 412 VAL N N N N 413 VAL CA C N S 414 VAL C C N N 415 VAL O O N N 416 VAL CB C N N 417 VAL CG1 C N N 418 VAL CG2 C N N 419 VAL OXT O N N 420 VAL H H N N 421 VAL H2 H N N 422 VAL HA H N N 423 VAL HB H N N 424 VAL HG11 H N N 425 VAL HG12 H N N 426 VAL HG13 H N N 427 VAL HG21 H N N 428 VAL HG22 H N N 429 VAL HG23 H N N 430 VAL HXT H N N 431 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 93G N1 C2 sing N N 1 93G N1 C6 sing N N 2 93G C2 N2 sing N N 3 93G C2 N3 doub N N 4 93G N3 C4 sing N N 5 93G C4 C5 doub Y N 6 93G C4 N9 sing Y N 7 93G C5 C6 sing N N 8 93G C5 N7 sing Y N 9 93G C6 O6 doub N N 10 93G N7 C8 sing Y N 11 93G N7 CM7 sing N N 12 93G C8 N9 doub Y N 13 93G N9 "C1'" sing N N 14 93G CG "C2'" sing N N 15 93G CG CD1 doub Y N 16 93G CG CD2 sing Y N 17 93G OH CZ sing N N 18 93G CN NN sing N N 19 93G CN ON doub N N 20 93G CN CE2 sing N N 21 93G CZ CE1 doub Y N 22 93G CZ CE2 sing Y N 23 93G "C1'" "C2'" sing N N 24 93G "C2'" "O2'" doub N N 25 93G CD1 CE1 sing Y N 26 93G CD2 CE2 doub Y N 27 93G N1 HN1 sing N N 28 93G N2 HN2 sing N N 29 93G N2 HN2A sing N N 30 93G C8 H8 sing N N 31 93G OH HOH sing N N 32 93G NN HNN sing N N 33 93G NN HNNA sing N N 34 93G "C1'" "H1'" sing N N 35 93G "C1'" "H1'A" sing N N 36 93G CD1 HD1 sing N N 37 93G CD2 HD2 sing N N 38 93G CE1 HE1 sing N N 39 93G CM7 HM7 sing N N 40 93G CM7 HM7A sing N N 41 93G CM7 HM7B sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 GLN N CA sing N N 125 GLN N H sing N N 126 GLN N H2 sing N N 127 GLN CA C sing N N 128 GLN CA CB sing N N 129 GLN CA HA sing N N 130 GLN C O doub N N 131 GLN C OXT sing N N 132 GLN CB CG sing N N 133 GLN CB HB2 sing N N 134 GLN CB HB3 sing N N 135 GLN CG CD sing N N 136 GLN CG HG2 sing N N 137 GLN CG HG3 sing N N 138 GLN CD OE1 doub N N 139 GLN CD NE2 sing N N 140 GLN NE2 HE21 sing N N 141 GLN NE2 HE22 sing N N 142 GLN OXT HXT sing N N 143 GLU N CA sing N N 144 GLU N H sing N N 145 GLU N H2 sing N N 146 GLU CA C sing N N 147 GLU CA CB sing N N 148 GLU CA HA sing N N 149 GLU C O doub N N 150 GLU C OXT sing N N 151 GLU CB CG sing N N 152 GLU CB HB2 sing N N 153 GLU CB HB3 sing N N 154 GLU CG CD sing N N 155 GLU CG HG2 sing N N 156 GLU CG HG3 sing N N 157 GLU CD OE1 doub N N 158 GLU CD OE2 sing N N 159 GLU OE2 HE2 sing N N 160 GLU OXT HXT sing N N 161 GLY N CA sing N N 162 GLY N H sing N N 163 GLY N H2 sing N N 164 GLY CA C sing N N 165 GLY CA HA2 sing N N 166 GLY CA HA3 sing N N 167 GLY C O doub N N 168 GLY C OXT sing N N 169 GLY OXT HXT sing N N 170 HIS N CA sing N N 171 HIS N H sing N N 172 HIS N H2 sing N N 173 HIS CA C sing N N 174 HIS CA CB sing N N 175 HIS CA HA sing N N 176 HIS C O doub N N 177 HIS C OXT sing N N 178 HIS CB CG sing N N 179 HIS CB HB2 sing N N 180 HIS CB HB3 sing N N 181 HIS CG ND1 sing Y N 182 HIS CG CD2 doub Y N 183 HIS ND1 CE1 doub Y N 184 HIS ND1 HD1 sing N N 185 HIS CD2 NE2 sing Y N 186 HIS CD2 HD2 sing N N 187 HIS CE1 NE2 sing Y N 188 HIS CE1 HE1 sing N N 189 HIS NE2 HE2 sing N N 190 HIS OXT HXT sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 ILE N CA sing N N 194 ILE N H sing N N 195 ILE N H2 sing N N 196 ILE CA C sing N N 197 ILE CA CB sing N N 198 ILE CA HA sing N N 199 ILE C O doub N N 200 ILE C OXT sing N N 201 ILE CB CG1 sing N N 202 ILE CB CG2 sing N N 203 ILE CB HB sing N N 204 ILE CG1 CD1 sing N N 205 ILE CG1 HG12 sing N N 206 ILE CG1 HG13 sing N N 207 ILE CG2 HG21 sing N N 208 ILE CG2 HG22 sing N N 209 ILE CG2 HG23 sing N N 210 ILE CD1 HD11 sing N N 211 ILE CD1 HD12 sing N N 212 ILE CD1 HD13 sing N N 213 ILE OXT HXT sing N N 214 LEU N CA sing N N 215 LEU N H sing N N 216 LEU N H2 sing N N 217 LEU CA C sing N N 218 LEU CA CB sing N N 219 LEU CA HA sing N N 220 LEU C O doub N N 221 LEU C OXT sing N N 222 LEU CB CG sing N N 223 LEU CB HB2 sing N N 224 LEU CB HB3 sing N N 225 LEU CG CD1 sing N N 226 LEU CG CD2 sing N N 227 LEU CG HG sing N N 228 LEU CD1 HD11 sing N N 229 LEU CD1 HD12 sing N N 230 LEU CD1 HD13 sing N N 231 LEU CD2 HD21 sing N N 232 LEU CD2 HD22 sing N N 233 LEU CD2 HD23 sing N N 234 LEU OXT HXT sing N N 235 LYS N CA sing N N 236 LYS N H sing N N 237 LYS N H2 sing N N 238 LYS CA C sing N N 239 LYS CA CB sing N N 240 LYS CA HA sing N N 241 LYS C O doub N N 242 LYS C OXT sing N N 243 LYS CB CG sing N N 244 LYS CB HB2 sing N N 245 LYS CB HB3 sing N N 246 LYS CG CD sing N N 247 LYS CG HG2 sing N N 248 LYS CG HG3 sing N N 249 LYS CD CE sing N N 250 LYS CD HD2 sing N N 251 LYS CD HD3 sing N N 252 LYS CE NZ sing N N 253 LYS CE HE2 sing N N 254 LYS CE HE3 sing N N 255 LYS NZ HZ1 sing N N 256 LYS NZ HZ2 sing N N 257 LYS NZ HZ3 sing N N 258 LYS OXT HXT sing N N 259 MET N CA sing N N 260 MET N H sing N N 261 MET N H2 sing N N 262 MET CA C sing N N 263 MET CA CB sing N N 264 MET CA HA sing N N 265 MET C O doub N N 266 MET C OXT sing N N 267 MET CB CG sing N N 268 MET CB HB2 sing N N 269 MET CB HB3 sing N N 270 MET CG SD sing N N 271 MET CG HG2 sing N N 272 MET CG HG3 sing N N 273 MET SD CE sing N N 274 MET CE HE1 sing N N 275 MET CE HE2 sing N N 276 MET CE HE3 sing N N 277 MET OXT HXT sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TRP N CA sing N N 348 TRP N H sing N N 349 TRP N H2 sing N N 350 TRP CA C sing N N 351 TRP CA CB sing N N 352 TRP CA HA sing N N 353 TRP C O doub N N 354 TRP C OXT sing N N 355 TRP CB CG sing N N 356 TRP CB HB2 sing N N 357 TRP CB HB3 sing N N 358 TRP CG CD1 doub Y N 359 TRP CG CD2 sing Y N 360 TRP CD1 NE1 sing Y N 361 TRP CD1 HD1 sing N N 362 TRP CD2 CE2 doub Y N 363 TRP CD2 CE3 sing Y N 364 TRP NE1 CE2 sing Y N 365 TRP NE1 HE1 sing N N 366 TRP CE2 CZ2 sing Y N 367 TRP CE3 CZ3 doub Y N 368 TRP CE3 HE3 sing N N 369 TRP CZ2 CH2 doub Y N 370 TRP CZ2 HZ2 sing N N 371 TRP CZ3 CH2 sing Y N 372 TRP CZ3 HZ3 sing N N 373 TRP CH2 HH2 sing N N 374 TRP OXT HXT sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '9-N-(3-CARBOXY-4-HYDROXYPHENYL)KETOMETHYL-7-N-METHYLGUANINE' 93G 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VQZ _pdbx_initial_refinement_model.details 'PDB ENTRY 2VQZ' #