HEADER TRANSFERASE 10-OCT-13 4CB6 TITLE STRUCTURE OF INFLUENZA A H5N1 PB2 CAP-BINDING DOMAIN WITH BOUND CAP TITLE 2 ANALOGUE (COMPOUND 11) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC SUBUNIT 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CAP-BINDING DOMAIN, RESIDUES 318-483; COMPND 5 SYNONYM: H5N1 INFLUENZA POLYMERASE PB2 SUBUNIT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 365107; SOURCE 4 STRAIN: A/DUCK/SHANTOU/4610/2003(H5N1); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-M11 KEYWDS TRANSFERASE, INFLUENZA POLYMERASE, M7GTP, CAP-BINDING INHIBITORS EXPDTA X-RAY DIFFRACTION AUTHOR S.PAUTUS,P.SEHR,J.LEWIS,A.FORTUNE,A.WOLKERSTORFER,O.SZOLAR, AUTHOR 2 D.GULLIGAY,T.LUNARDI,J.L.DECOUT,S.CUSACK REVDAT 3 20-DEC-23 4CB6 1 REMARK REVDAT 2 25-DEC-13 4CB6 1 JRNL REVDAT 1 30-OCT-13 4CB6 0 JRNL AUTH S.PAUTUS,P.SEHR,J.LEWIS,A.FORTUNE,A.WOLKERSTORFER,O.SZOLAR, JRNL AUTH 2 D.GULLIGAY,T.LUNARDI,J.L.DECOUT,S.CUSACK JRNL TITL NEW 7-METHYL-GUANOSINE DERIVATIVES TARGETING THE INFLUENZA JRNL TITL 2 POLYMERASE PB2 CAP-BINDING DOMAIN JRNL REF J.MED.CHEM. V. 56 8915 2013 JRNL REFN ISSN 0022-2623 JRNL PMID 24134208 JRNL DOI 10.1021/JM401369Y REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.405 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2689 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2672 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3609 ; 1.615 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6121 ; 1.052 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;32.472 ;22.893 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;14.831 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.781 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 399 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3019 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 2.950 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.52 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VQZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM IODIDE, PH 6.3, 20% PEG REMARK 280 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.56500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.08500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.56500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 317 REMARK 465 ARG A 318 REMARK 465 GLY B 317 REMARK 465 ARG B 318 REMARK 465 ILE B 319 REMARK 465 SER B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 483 CA C O CB CG SD CE REMARK 470 MET B 483 CA C O CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 375 OE1 GLN B 383 1.95 REMARK 500 O SER B 393 O HOH B 2028 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 343 O HOH A 2019 4546 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 349 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG A 375 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 375 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 377 -163.34 -123.28 REMARK 500 THR A 378 107.96 -56.64 REMARK 500 ASN A 419 40.22 -140.71 REMARK 500 ALA A 424 -0.39 -54.39 REMARK 500 ASP A 441 114.26 -160.16 REMARK 500 ASN A 456 -0.09 68.03 REMARK 500 ALA B 377 -164.65 -124.90 REMARK 500 THR B 378 106.68 -54.75 REMARK 500 ASN B 419 49.91 -143.12 REMARK 500 ASN B 422 -161.54 -79.35 REMARK 500 MET B 460 -169.17 -103.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 IODIDE ION (IOD): FROM CRYSTALLISATION MEDIUM REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 29R A 1483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 29R B 1483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 1484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 1485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 1489 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CB4 RELATED DB: PDB REMARK 900 STRUCTURE OF INFLUENZA A H5N1 PB2 CAP-BINDING DOMAIN WITH BOUND REMARK 900 M7GTP REMARK 900 RELATED ID: 4CB5 RELATED DB: PDB REMARK 900 STRUCTURE OF INFLUENZA A H5N1 PB2 CAP-BINDING DOMAIN WITH BOUND CAP REMARK 900 ANALOGUE (COMPOUND 8F) REMARK 900 RELATED ID: 4CB7 RELATED DB: PDB REMARK 900 STRUCTURE OF INFLUENZA A H5N1 PB2 CAP-BINDING DOMAIN WITH BOUND CAP REMARK 900 ANALOGUE (COMPOUND 8E) REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXTRA N-TERMINAL GLYCINE AFTER HIS-TAG CLEAVAGE DBREF 4CB6 A 318 483 UNP Q2LG68 Q2LG68_9INFA 318 483 DBREF 4CB6 B 318 483 UNP Q2LG68 Q2LG68_9INFA 318 483 SEQADV 4CB6 GLY A 317 UNP Q2LG68 EXPRESSION TAG SEQADV 4CB6 GLY B 317 UNP Q2LG68 EXPRESSION TAG SEQRES 1 A 167 GLY ARG ILE SER SER SER PHE SER PHE GLY GLY PHE THR SEQRES 2 A 167 PHE LYS ARG THR SER GLY SER SER VAL LYS LYS GLU GLU SEQRES 3 A 167 GLU VAL LEU THR GLY ASN LEU GLN THR LEU LYS ILE ARG SEQRES 4 A 167 VAL HIS GLU GLY TYR GLU GLU PHE THR MET VAL GLY ARG SEQRES 5 A 167 ARG ALA THR ALA ILE LEU ARG LYS ALA THR ARG ARG LEU SEQRES 6 A 167 ILE GLN LEU ILE VAL SER GLY ARG ASP GLU GLN SER ILE SEQRES 7 A 167 ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SER GLN GLU SEQRES 8 A 167 ASP CYS MET ILE LYS ALA VAL ARG GLY ASP LEU ASN PHE SEQRES 9 A 167 VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO MET HIS GLN SEQRES 10 A 167 LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS VAL LEU PHE SEQRES 11 A 167 GLN ASN TRP GLY ILE GLU PRO ILE ASP ASN VAL MET GLY SEQRES 12 A 167 MET ILE GLY ILE LEU PRO ASP MET THR PRO SER THR GLU SEQRES 13 A 167 MET SER LEU ARG GLY VAL ARG VAL SER LYS MET SEQRES 1 B 167 GLY ARG ILE SER SER SER PHE SER PHE GLY GLY PHE THR SEQRES 2 B 167 PHE LYS ARG THR SER GLY SER SER VAL LYS LYS GLU GLU SEQRES 3 B 167 GLU VAL LEU THR GLY ASN LEU GLN THR LEU LYS ILE ARG SEQRES 4 B 167 VAL HIS GLU GLY TYR GLU GLU PHE THR MET VAL GLY ARG SEQRES 5 B 167 ARG ALA THR ALA ILE LEU ARG LYS ALA THR ARG ARG LEU SEQRES 6 B 167 ILE GLN LEU ILE VAL SER GLY ARG ASP GLU GLN SER ILE SEQRES 7 B 167 ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SER GLN GLU SEQRES 8 B 167 ASP CYS MET ILE LYS ALA VAL ARG GLY ASP LEU ASN PHE SEQRES 9 B 167 VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO MET HIS GLN SEQRES 10 B 167 LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS VAL LEU PHE SEQRES 11 B 167 GLN ASN TRP GLY ILE GLU PRO ILE ASP ASN VAL MET GLY SEQRES 12 B 167 MET ILE GLY ILE LEU PRO ASP MET THR PRO SER THR GLU SEQRES 13 B 167 MET SER LEU ARG GLY VAL ARG VAL SER LYS MET HET 29R A1483 26 HET IOD A1484 1 HET IOD A1485 1 HET IOD A1486 2 HET IOD A1487 1 HET IOD A1488 1 HET IOD A1489 1 HET IOD A1490 1 HET 29R B1483 26 HET IOD B1484 2 HET IOD B1485 2 HET IOD B1486 2 HET IOD B1487 1 HET IOD B1488 2 HET IOD B1489 1 HETNAM 29R 2,9-N,N-DI(4-CARBOXYBUTYL)-7-N-METHYLGUANINE HETNAM IOD IODIDE ION FORMUL 3 29R 2(C16 H24 N5 O5 1+) FORMUL 4 IOD 13(I 1-) FORMUL 18 HOH *144(H2 O) HELIX 1 1 ASP A 390 SER A 405 1 16 HELIX 2 2 GLU A 407 LYS A 412 1 6 HELIX 3 3 ASN A 429 ASP A 441 1 13 HELIX 4 4 ALA A 442 GLY A 450 1 9 HELIX 5 5 ASP B 390 SER B 405 1 16 HELIX 6 6 GLU B 407 LYS B 412 1 6 HELIX 7 7 ASN B 429 ASP B 441 1 13 HELIX 8 8 ALA B 442 GLY B 450 1 9 SHEET 1 AA 6 PHE A 323 PHE A 325 0 SHEET 2 AA 6 PHE A 328 GLY A 335 -1 O PHE A 328 N PHE A 325 SHEET 3 AA 6 GLU A 361 VAL A 366 -1 O GLU A 362 N THR A 333 SHEET 4 AA 6 ALA A 370 ALA A 377 -1 O ALA A 372 N MET A 365 SHEET 5 AA 6 ARG A 380 GLY A 388 -1 O ARG A 380 N ALA A 377 SHEET 6 AA 6 VAL A 478 VAL A 480 1 O ARG A 479 N VAL A 386 SHEET 1 AB 2 VAL A 338 LEU A 345 0 SHEET 2 AB 2 THR A 351 GLU A 358 -1 O LEU A 352 N VAL A 344 SHEET 1 AC 2 ILE A 451 PRO A 453 0 SHEET 2 AC 2 MET A 473 LEU A 475 -1 O SER A 474 N GLU A 452 SHEET 1 AD 2 GLY A 462 ILE A 463 0 SHEET 2 AD 2 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 BA 6 PHE B 323 PHE B 325 0 SHEET 2 BA 6 PHE B 328 GLY B 335 -1 O PHE B 328 N PHE B 325 SHEET 3 BA 6 GLU B 361 VAL B 366 -1 O GLU B 362 N THR B 333 SHEET 4 BA 6 ALA B 370 ALA B 377 -1 O ALA B 372 N MET B 365 SHEET 5 BA 6 ARG B 380 GLY B 388 -1 O ARG B 380 N ALA B 377 SHEET 6 BA 6 VAL B 478 VAL B 480 1 O ARG B 479 N VAL B 386 SHEET 1 BB 2 VAL B 338 LEU B 345 0 SHEET 2 BB 2 THR B 351 GLU B 358 -1 O LEU B 352 N VAL B 344 SHEET 1 BC 2 ILE B 451 PRO B 453 0 SHEET 2 BC 2 MET B 473 LEU B 475 -1 O SER B 474 N GLU B 452 SHEET 1 BD 2 GLY B 462 ILE B 463 0 SHEET 2 BD 2 PRO B 469 SER B 470 -1 O SER B 470 N GLY B 462 SITE 1 AC1 9 SER A 321 PHE A 323 HIS A 357 GLU A 361 SITE 2 AC1 9 PHE A 363 LYS A 376 PHE A 404 GLN A 406 SITE 3 AC1 9 IOD A1486 SITE 1 AC2 2 ARG A 355 MET A 431 SITE 1 AC3 1 ASN A 456 SITE 1 AC4 2 PHE A 325 29R A1483 SITE 1 AC5 2 ASN A 429 HIS A 432 SITE 1 AC6 10 SER B 321 PHE B 323 SER B 337 HIS B 357 SITE 2 AC6 10 GLU B 361 PHE B 363 LYS B 376 PHE B 404 SITE 3 AC6 10 GLN B 406 IOD B1484 SITE 1 AC7 2 PHE B 325 29R B1483 SITE 1 AC8 1 MET B 460 SITE 1 AC9 2 THR B 378 HOH B2049 SITE 1 BC1 1 HOH B2045 CRYST1 116.170 31.130 98.790 90.00 118.27 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008608 0.000000 0.004629 0.00000 SCALE2 0.000000 0.032123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011493 0.00000