HEADER TRANSFERASE 14-OCT-13 4CBK TITLE THE C-RING ION BINDING SITE OF THE ATP SYNTHASE FROM BACILLUS TITLE 2 PSEUDOFIRMUS OF4 IS ADAPTED TO ALKALIPHILIC CELL PHYSIOLOGY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT C; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M; COMPND 4 SYNONYM: ATP SYNTHASE F(0) SECTOR SUBUNIT C, F-TYPE ATPASE SUBUNIT C COMPND 5 , F-ATPASE SUBUNIT C, LIPID-BINDING PROTEIN, OF4 C RING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PSEUDOFIRMUS OF4; SOURCE 3 ORGANISM_TAXID: 398511 KEYWDS TRANSFERASE, F1FO-ATP SYNTHASE, C-RING ROTOR, ION BINDING POCKET EXPDTA X-RAY DIFFRACTION AUTHOR L.PREISS,O.YILDIZ,T.MEIER REVDAT 3 20-DEC-23 4CBK 1 REMARK LINK REVDAT 2 11-JUN-14 4CBK 1 JRNL REVDAT 1 23-APR-14 4CBK 0 JRNL AUTH L.PREISS,J.D.LANGER,D.B.HICKS,J.LIU,O.YILDIZ,T.A.KRULWICH, JRNL AUTH 2 T.MEIER JRNL TITL THE C-RING ION-BINDING SITE OF THE ATP SYNTHASE FROM JRNL TITL 2 BACILLUS PSEUDOFIRMUS OF4 IS ADAPTED TO ALKALIPHILIC JRNL TITL 3 LIFESTYLE. JRNL REF MOL.MICROBIOL. V. 92 973 2014 JRNL REFN ISSN 0950-382X JRNL PMID 24707994 JRNL DOI 10.1111/MMI.12605 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 60880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0091 - 6.7706 0.98 2670 141 0.2198 0.2470 REMARK 3 2 6.7706 - 5.3782 1.00 2682 142 0.2597 0.2489 REMARK 3 3 5.3782 - 4.6995 1.00 2661 140 0.2067 0.2146 REMARK 3 4 4.6995 - 4.2704 1.00 2676 141 0.1588 0.2034 REMARK 3 5 4.2704 - 3.9646 1.00 2639 139 0.1809 0.2289 REMARK 3 6 3.9646 - 3.7310 0.99 2639 139 0.1816 0.2200 REMARK 3 7 3.7310 - 3.5443 0.99 2622 138 0.1825 0.2286 REMARK 3 8 3.5443 - 3.3901 0.99 2616 138 0.1716 0.2132 REMARK 3 9 3.3901 - 3.2597 0.99 2622 138 0.1594 0.1800 REMARK 3 10 3.2597 - 3.1472 0.99 2643 139 0.1690 0.1972 REMARK 3 11 3.1472 - 3.0488 0.99 2576 135 0.1699 0.2203 REMARK 3 12 3.0488 - 2.9617 0.99 2648 139 0.1636 0.2297 REMARK 3 13 2.9617 - 2.8838 0.99 2618 136 0.1695 0.2277 REMARK 3 14 2.8838 - 2.8134 0.99 2613 137 0.1698 0.1961 REMARK 3 15 2.8134 - 2.7495 0.99 2618 138 0.1809 0.2384 REMARK 3 16 2.7495 - 2.6910 0.99 2604 137 0.1987 0.2442 REMARK 3 17 2.6910 - 2.6372 0.99 2605 137 0.2083 0.2446 REMARK 3 18 2.6372 - 2.5874 0.99 2623 138 0.2194 0.2307 REMARK 3 19 2.5874 - 2.5412 0.99 2599 137 0.2337 0.2589 REMARK 3 20 2.5412 - 2.4982 0.99 2656 140 0.2576 0.3146 REMARK 3 21 2.4982 - 2.4579 0.99 2591 136 0.2668 0.3006 REMARK 3 22 2.4579 - 2.4201 0.99 2616 138 0.2762 0.2862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6759 REMARK 3 ANGLE : 0.793 9177 REMARK 3 CHIRALITY : 0.044 1245 REMARK 3 PLANARITY : 0.005 1055 REMARK 3 DIHEDRAL : 18.129 2474 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8551 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60954 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.840 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.530 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2X2V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 9 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.37500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIDECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIDECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -648.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1P DPV F 200 O HOH F 2001 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 55 -72.18 -49.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 30 OE1 REMARK 620 2 HOH B2002 O 108.2 REMARK 620 3 GLU C 30 OE2 128.2 101.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 30 OE1 REMARK 620 2 HOH C2003 O 107.6 REMARK 620 3 GLU D 30 OE2 108.8 102.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 30 OE1 REMARK 620 2 HOH D2002 O 114.4 REMARK 620 3 GLU E 30 OE2 119.0 108.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 30 OE1 REMARK 620 2 HOH E2003 O 107.4 REMARK 620 3 GLU F 30 OE2 128.3 114.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU F 30 OE1 REMARK 620 2 HOH F2002 O 110.2 REMARK 620 3 GLU G 30 OE2 133.4 106.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA G 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU G 30 OE1 REMARK 620 2 HOH G2003 O 116.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 30 OE1 REMARK 620 2 HOH H2002 O 104.7 REMARK 620 3 GLU I 30 OE2 116.0 100.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU I 30 OE1 REMARK 620 2 HOH I2002 O 104.6 REMARK 620 3 GLU J 30 OE2 119.3 118.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA K 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU K 30 OE1 REMARK 620 2 HOH K2003 O 111.2 REMARK 620 3 GLU L 30 OE2 124.2 118.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA L 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 30 OE1 REMARK 620 2 HOH L2002 O 121.0 REMARK 620 3 GLU M 30 OE2 126.4 111.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LMT B 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV D 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV E 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV F 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA G 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV G 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA H 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV H 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA I 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV I 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV J 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA K 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV K 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV L 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DPV M 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CBJ RELATED DB: PDB REMARK 900 THE C-RING ION BINDING SITE OF THE ATP SYNTHASE FROM BACILLUS REMARK 900 PSEUDOFIRMUS OF4 IS ADAPTED TO ALKALIPHILIC CELL PHYSIOLOGY DBREF 4CBK A 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK B 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK C 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK D 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK E 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK F 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK G 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK H 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK I 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK J 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK K 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK L 1 69 UNP P22483 ATPL_BACPE 1 69 DBREF 4CBK M 1 69 UNP P22483 ATPL_BACPE 1 69 SEQRES 1 A 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 A 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 A 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 A 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 A 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 A 69 LEU ILE LEU PHE SEQRES 1 B 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 B 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 B 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 B 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 B 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 B 69 LEU ILE LEU PHE SEQRES 1 C 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 C 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 C 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 C 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 C 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 C 69 LEU ILE LEU PHE SEQRES 1 D 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 D 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 D 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 D 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 D 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 D 69 LEU ILE LEU PHE SEQRES 1 E 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 E 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 E 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 E 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 E 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 E 69 LEU ILE LEU PHE SEQRES 1 F 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 F 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 F 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 F 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 F 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 F 69 LEU ILE LEU PHE SEQRES 1 G 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 G 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 G 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 G 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 G 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 G 69 LEU ILE LEU PHE SEQRES 1 H 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 H 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 H 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 H 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 H 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 H 69 LEU ILE LEU PHE SEQRES 1 I 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 I 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 I 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 I 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 I 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 I 69 LEU ILE LEU PHE SEQRES 1 J 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 J 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 J 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 J 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 J 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 J 69 LEU ILE LEU PHE SEQRES 1 K 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 K 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 K 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 K 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 K 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 K 69 LEU ILE LEU PHE SEQRES 1 L 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 L 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 L 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 L 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 L 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 L 69 LEU ILE LEU PHE SEQRES 1 M 69 FME ALA PHE LEU GLY ALA ALA ILE ALA ALA GLY LEU ALA SEQRES 2 M 69 ALA VAL ALA GLY ALA ILE ALA VAL ALA ILE ILE VAL LYS SEQRES 3 M 69 ALA THR ILE GLU GLY THR THR ARG GLN PRO GLU LEU ARG SEQRES 4 M 69 GLY THR LEU GLN THR LEU MET PHE ILE GLY VAL PRO LEU SEQRES 5 M 69 ALA GLU ALA VAL PRO ILE ILE ALA ILE VAL ILE SER LEU SEQRES 6 M 69 LEU ILE LEU PHE MODRES 4CBK FME A 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME B 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME C 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME D 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME E 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME F 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME G 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME H 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME I 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME J 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME K 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME L 1 MET N-FORMYLMETHIONINE MODRES 4CBK FME M 1 MET N-FORMYLMETHIONINE HET FME A 1 10 HET FME B 1 10 HET FME C 1 10 HET FME D 1 10 HET FME E 1 10 HET FME F 1 10 HET FME G 1 10 HET FME H 1 10 HET FME I 1 10 HET FME J 1 10 HET FME K 1 10 HET FME L 1 10 HET FME M 1 10 HET DPV A 200 23 HET NA B 101 1 HET DPV B 200 23 HET LMT B1000 35 HET NA C 101 1 HET DPV C 200 23 HET NA D 101 1 HET DPV D 200 23 HET NA E 101 1 HET DPV E 200 23 HET NA F 101 1 HET DPV F 200 23 HET NA G 101 1 HET DPV G 200 23 HET NA H 101 1 HET DPV H 200 23 HET NA I 101 1 HET DPV I 200 23 HET DPV J 200 23 HET NA K 101 1 HET DPV K 200 23 HET NA L 101 1 HET DPV L 200 23 HET DPV M 200 23 HETNAM FME N-FORMYLMETHIONINE HETNAM DPV DODECYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE HETNAM NA SODIUM ION HETNAM LMT DODECYL-BETA-D-MALTOSIDE HETSYN DPV DODECYLPHOSPHOCHOLINE FORMUL 1 FME 13(C6 H11 N O3 S) FORMUL 14 DPV 13(C17 H38 N O4 P) FORMUL 15 NA 10(NA 1+) FORMUL 17 LMT C24 H46 O11 FORMUL 38 HOH *74(H2 O) HELIX 1 1 FME A 1 GLN A 35 1 35 HELIX 2 2 LEU A 38 PHE A 69 1 32 HELIX 3 3 FME B 1 GLN B 35 1 35 HELIX 4 4 LEU B 38 PHE B 69 1 32 HELIX 5 5 FME C 1 GLN C 35 1 35 HELIX 6 6 LEU C 38 PHE C 69 1 32 HELIX 7 7 FME D 1 GLN D 35 1 35 HELIX 8 8 LEU D 38 PHE D 69 1 32 HELIX 9 9 FME E 1 GLN E 35 1 35 HELIX 10 10 LEU E 38 PHE E 69 1 32 HELIX 11 11 FME F 1 GLN F 35 1 35 HELIX 12 12 LEU F 38 PHE F 69 1 32 HELIX 13 13 FME G 1 GLN G 35 1 35 HELIX 14 14 LEU G 38 PHE G 69 1 32 HELIX 15 15 FME H 1 GLN H 35 1 35 HELIX 16 16 LEU H 38 PHE H 69 1 32 HELIX 17 17 FME I 1 GLN I 35 1 35 HELIX 18 18 LEU I 38 PHE I 69 1 32 HELIX 19 19 FME J 1 GLN J 35 1 35 HELIX 20 20 LEU J 38 PHE J 69 1 32 HELIX 21 21 FME K 1 GLN K 35 1 35 HELIX 22 22 LEU K 38 PHE K 69 1 32 HELIX 23 23 FME L 1 GLN L 35 1 35 HELIX 24 24 LEU L 38 PHE L 69 1 32 HELIX 25 25 FME M 1 GLN M 35 1 35 HELIX 26 26 LEU M 38 PHE M 69 1 32 LINK C FME A 1 N ALA A 2 1555 1555 1.33 LINK C FME B 1 N ALA B 2 1555 1555 1.33 LINK C FME C 1 N ALA C 2 1555 1555 1.33 LINK C FME D 1 N ALA D 2 1555 1555 1.33 LINK C FME E 1 N ALA E 2 1555 1555 1.33 LINK C FME F 1 N ALA F 2 1555 1555 1.33 LINK C FME G 1 N ALA G 2 1555 1555 1.33 LINK C FME H 1 N ALA H 2 1555 1555 1.33 LINK C FME I 1 N ALA I 2 1555 1555 1.33 LINK C FME J 1 N ALA J 2 1555 1555 1.33 LINK C FME K 1 N ALA K 2 1555 1555 1.33 LINK C FME L 1 N ALA L 2 1555 1555 1.33 LINK C FME M 1 N ALA M 2 1555 1555 1.33 LINK OE1 GLU B 30 NA NA B 101 1555 1555 2.55 LINK NA NA B 101 O HOH B2002 1555 1555 3.08 LINK NA NA B 101 OE2 GLU C 30 1555 1555 2.64 LINK OE1 GLU C 30 NA NA C 101 1555 1555 2.50 LINK NA NA C 101 O HOH C2003 1555 1555 2.83 LINK NA NA C 101 OE2 GLU D 30 1555 1555 2.78 LINK OE1 GLU D 30 NA NA D 101 1555 1555 2.46 LINK NA NA D 101 O HOH D2002 1555 1555 2.71 LINK NA NA D 101 OE2 GLU E 30 1555 1555 2.55 LINK OE1 GLU E 30 NA NA E 101 1555 1555 2.81 LINK NA NA E 101 O HOH E2003 1555 1555 2.72 LINK NA NA E 101 OE2 GLU F 30 1555 1555 2.49 LINK OE1 GLU F 30 NA NA F 101 1555 1555 2.69 LINK NA NA F 101 O HOH F2002 1555 1555 3.02 LINK NA NA F 101 OE2 GLU G 30 1555 1555 2.52 LINK OE1 GLU G 30 NA NA G 101 1555 1555 2.51 LINK NA NA G 101 O HOH G2003 1555 1555 2.89 LINK OE1 GLU H 30 NA NA H 101 1555 1555 2.85 LINK NA NA H 101 O HOH H2002 1555 1555 2.96 LINK NA NA H 101 OE2 GLU I 30 1555 1555 3.03 LINK OE1 GLU I 30 NA NA I 101 1555 1555 2.69 LINK NA NA I 101 O HOH I2002 1555 1555 2.70 LINK NA NA I 101 OE2 GLU J 30 1555 1555 2.69 LINK OE1 GLU K 30 NA NA K 101 1555 1555 2.69 LINK NA NA K 101 O HOH K2003 1555 1555 2.81 LINK NA NA K 101 OE2 GLU L 30 1555 1555 2.55 LINK OE1 GLU L 30 NA NA L 101 1555 1555 2.50 LINK NA NA L 101 O HOH L2002 1555 1555 2.84 LINK NA NA L 101 OE2 GLU M 30 1555 1555 2.51 SITE 1 AC1 4 LYS A 26 LYS B 26 DPV B 200 DPV M 200 SITE 1 AC2 3 GLU B 30 HOH B2002 GLU C 30 SITE 1 AC3 5 DPV A 200 ILE B 23 LYS B 26 LYS C 26 SITE 2 AC3 5 DPV C 200 SITE 1 AC4 3 GLU B 37 PRO C 36 ARG C 39 SITE 1 AC5 4 ALA C 27 GLU C 30 HOH C2003 GLU D 30 SITE 1 AC6 7 DPV B 200 LYS C 26 GLU C 30 HOH C2002 SITE 2 AC6 7 LYS D 26 GLU D 30 DPV D 200 SITE 1 AC7 4 ALA D 27 GLU D 30 HOH D2002 GLU E 30 SITE 1 AC8 7 DPV C 200 LYS D 26 GLU D 30 HOH D2001 SITE 2 AC8 7 LYS E 26 GLU E 30 DPV E 200 SITE 1 AC9 3 GLU E 30 HOH E2003 GLU F 30 SITE 1 BC1 5 DPV D 200 LYS E 26 HOH E2002 LYS F 26 SITE 2 BC1 5 DPV F 200 SITE 1 BC2 5 GLU F 30 DPV F 200 HOH F2002 LYS G 26 SITE 2 BC2 5 GLU G 30 SITE 1 BC3 9 ILE E 23 DPV E 200 LYS F 26 GLU F 30 SITE 2 BC3 9 NA F 101 HOH F2001 LYS G 26 GLU G 30 SITE 3 BC3 9 DPV G 200 SITE 1 BC4 3 GLU G 30 HOH G2003 GLU H 30 SITE 1 BC5 7 DPV F 200 ILE G 19 LYS G 26 GLU G 30 SITE 2 BC5 7 LYS H 26 GLU H 30 DPV H 200 SITE 1 BC6 5 ALA H 27 GLU H 30 HOH H2002 LYS I 26 SITE 2 BC6 5 GLU I 30 SITE 1 BC7 7 DPV G 200 ILE H 23 LYS H 26 HOH H2001 SITE 2 BC7 7 LYS I 26 GLU I 30 DPV I 200 SITE 1 BC8 4 ALA I 27 GLU I 30 HOH I2002 GLU J 30 SITE 1 BC9 5 DPV H 200 LYS I 26 HOH I2001 LYS J 26 SITE 2 BC9 5 DPV J 200 SITE 1 CC1 6 DPV I 200 LYS J 26 GLU J 30 LYS K 26 SITE 2 CC1 6 GLU K 30 DPV K 200 SITE 1 CC2 4 GLU K 30 HOH K2003 LYS L 26 GLU L 30 SITE 1 CC3 5 DPV J 200 LYS K 26 HOH K2002 LYS L 26 SITE 2 CC3 5 DPV L 200 SITE 1 CC4 3 GLU L 30 HOH L2002 GLU M 30 SITE 1 CC5 5 DPV K 200 ILE L 23 LYS L 26 LYS M 26 SITE 2 CC5 5 DPV M 200 SITE 1 CC6 6 LYS A 26 DPV A 200 HOH A2002 DPV L 200 SITE 2 CC6 6 LYS M 26 GLU M 30 CRYST1 73.790 96.750 118.330 90.00 105.38 90.00 P 1 21 1 26 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013552 0.000000 0.003728 0.00000 SCALE2 0.000000 0.010336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008765 0.00000 HETATM 1 N FME A 1 33.374 -25.132 1.184 1.00 72.71 N HETATM 2 CN FME A 1 33.208 -26.108 2.134 1.00 69.41 C HETATM 3 O1 FME A 1 33.130 -27.276 1.797 1.00 83.78 O HETATM 4 CA FME A 1 32.924 -23.884 1.774 1.00 74.54 C HETATM 5 CB FME A 1 33.504 -22.710 0.996 1.00 70.97 C HETATM 6 CG FME A 1 34.952 -22.409 1.381 1.00 83.84 C HETATM 7 SD FME A 1 35.070 -22.089 3.112 1.00 97.42 S HETATM 8 CE FME A 1 36.484 -21.093 3.455 1.00 91.92 C HETATM 9 C FME A 1 31.424 -23.886 1.714 1.00 71.98 C HETATM 10 O FME A 1 30.763 -23.267 2.547 1.00 75.94 O