HEADER MOTOR PROTEIN 17-OCT-13 4CBX TITLE CRYSTAL STRUCTURE OF PLASMODIUM BERGHEI ACTIN II COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIN II, ACTIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GELSOLIN; COMPND 8 CHAIN: G; COMPND 9 FRAGMENT: G1 DOMAIN, RESIDUES 50-174; COMPND 10 SYNONYM: ACTIN-DEPOLYMERIZING FACTOR, ADF, BREVIN, GELSOLIN G1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM BERGHEI; SOURCE 3 ORGANISM_TAXID: 5821; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS MOTOR PROTEIN, MALARIA, MOTILITY, PARASITE EXPDTA X-RAY DIFFRACTION AUTHOR J.VAHOKOSKI,S.P.BHARGAV,A.DESFOSSES,M.ANDREADAKI,E.P.KUMPULA, AUTHOR 2 A.IGNATEV,S.MUNICO MARTINEZ,S.LEPPER,F.FRISCHKNECHT,I.SIDEN-KIAMOS, AUTHOR 3 C.SACHSE,I.KURSULA REVDAT 4 20-DEC-23 4CBX 1 REMARK LINK REVDAT 3 24-APR-19 4CBX 1 SOURCE REVDAT 2 05-JUL-17 4CBX 1 REMARK REVDAT 1 30-APR-14 4CBX 0 JRNL AUTH J.VAHOKOSKI,S.P.BHARGAV,A.DESFOSSES,M.ANDREADAKI,E.KUMPULA, JRNL AUTH 2 S.M.MARTINEZ,A.IGNATEV,S.LEPPER,F.FRISCHKNECHT, JRNL AUTH 3 I.SIDEN-KIAMOS,C.SACHSE,I.KURSULA JRNL TITL STRUCTURAL DIFFERENCES EXPLAIN DIVERSE FUNCTIONS OF JRNL TITL 2 PLASMODIUM ACTINS. JRNL REF PLOS PATHOG. V. 10 4091 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 24743229 JRNL DOI 10.1371/JOURNAL.PPAT.1004091 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.9103 - 4.8874 1.00 2622 145 0.1623 0.1737 REMARK 3 2 4.8874 - 3.8815 1.00 2538 170 0.1424 0.1788 REMARK 3 3 3.8815 - 3.3915 1.00 2530 136 0.1744 0.2196 REMARK 3 4 3.3915 - 3.0817 1.00 2579 127 0.2075 0.2457 REMARK 3 5 3.0817 - 2.8609 1.00 2573 116 0.2201 0.2389 REMARK 3 6 2.8609 - 2.6923 1.00 2548 118 0.2169 0.2427 REMARK 3 7 2.6923 - 2.5576 1.00 2526 146 0.2299 0.3091 REMARK 3 8 2.5576 - 2.4463 1.00 2560 129 0.2368 0.2819 REMARK 3 9 2.4463 - 2.3521 1.00 2541 131 0.2593 0.3125 REMARK 3 10 2.3521 - 2.2710 1.00 2516 120 0.2532 0.2878 REMARK 3 11 2.2710 - 2.2000 0.95 2410 154 0.2536 0.2702 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4112 REMARK 3 ANGLE : 0.670 5579 REMARK 3 CHIRALITY : 0.050 604 REMARK 3 PLANARITY : 0.003 721 REMARK 3 DIHEDRAL : 12.413 1526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN G AND (RESID 28 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6716 -6.0167 30.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.3681 T22: 0.3544 REMARK 3 T33: 0.0049 T12: 0.1430 REMARK 3 T13: -0.0977 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.3828 L22: 0.3711 REMARK 3 L33: 0.0659 L12: 0.0061 REMARK 3 L13: -0.1560 L23: 0.0298 REMARK 3 S TENSOR REMARK 3 S11: 0.0992 S12: -0.3679 S13: 0.0414 REMARK 3 S21: 0.4235 S22: 0.0249 S23: -0.1289 REMARK 3 S31: 0.0790 S32: -0.0262 S33: 0.1743 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN G AND (RESID 47 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5824 -12.9257 24.3882 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.2411 REMARK 3 T33: 0.1942 T12: 0.0960 REMARK 3 T13: -0.0222 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.0327 L22: 0.0210 REMARK 3 L33: 0.1351 L12: 0.0131 REMARK 3 L13: -0.0069 L23: -0.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.0736 S13: 0.0995 REMARK 3 S21: 0.1777 S22: 0.0380 S23: -0.0637 REMARK 3 S31: 0.1963 S32: 0.1288 S33: -0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN G AND (RESID 76 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9879 -3.4055 19.3896 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1622 REMARK 3 T33: 0.2006 T12: 0.0473 REMARK 3 T13: -0.0085 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.0853 L22: 0.1948 REMARK 3 L33: 0.0164 L12: -0.1507 REMARK 3 L13: 0.0336 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: -0.0319 S12: -0.1722 S13: -0.0447 REMARK 3 S21: 0.0389 S22: 0.0643 S23: -0.1205 REMARK 3 S31: -0.0352 S32: 0.0230 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN G AND (RESID 128 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7554 -15.9237 17.4355 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.1859 REMARK 3 T33: 0.1759 T12: 0.0384 REMARK 3 T13: -0.0064 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.0099 L22: 0.1346 REMARK 3 L33: 0.1076 L12: 0.0226 REMARK 3 L13: 0.0272 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: -0.0550 S12: -0.1067 S13: 0.0463 REMARK 3 S21: 0.0840 S22: 0.0544 S23: -0.0125 REMARK 3 S31: 0.0990 S32: 0.0456 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 5 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9533 7.4751 18.9993 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1664 REMARK 3 T33: 0.1429 T12: 0.0463 REMARK 3 T13: 0.0234 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.0476 L22: 1.0175 REMARK 3 L33: 0.6197 L12: 0.2249 REMARK 3 L13: -0.0264 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.0483 S12: -0.0688 S13: 0.1139 REMARK 3 S21: 0.0737 S22: 0.0145 S23: 0.1791 REMARK 3 S31: 0.0122 S32: -0.1475 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 145 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4861 4.2690 -3.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.1014 T22: 0.0774 REMARK 3 T33: 0.0988 T12: -0.0204 REMARK 3 T13: -0.0089 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.6852 L22: 0.7674 REMARK 3 L33: 0.4144 L12: 0.2550 REMARK 3 L13: -0.0686 L23: 0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.1227 S12: 0.0545 S13: 0.0544 REMARK 3 S21: -0.1140 S22: 0.0432 S23: 0.0530 REMARK 3 S31: 0.0011 S32: 0.0055 S33: -0.1886 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 350 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1435 9.3524 32.1045 REMARK 3 T TENSOR REMARK 3 T11: 0.5019 T22: 0.4182 REMARK 3 T33: 0.2786 T12: 0.0843 REMARK 3 T13: -0.0348 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.0079 L22: 0.0400 REMARK 3 L33: -0.0018 L12: -0.0227 REMARK 3 L13: -0.0064 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.1342 S12: -0.1775 S13: 0.0527 REMARK 3 S21: -0.1776 S22: -0.0527 S23: 0.1545 REMARK 3 S31: -0.2161 S32: 0.2472 S33: -0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : PLATINUM135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM2 REMARK 200 DATA SCALING SOFTWARE : PROTEUM2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1P8Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG 8000, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M BIS-TRIS PROPANE PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.45400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 39 REMARK 465 MET A 40 REMARK 465 PRO A 41 REMARK 465 ASN A 42 REMARK 465 ILE A 43 REMARK 465 MET A 44 REMARK 465 VAL A 45 REMARK 465 GLY A 46 REMARK 465 MET A 47 REMARK 465 GLU A 48 REMARK 465 GLN A 49 REMARK 465 LYS A 374 REMARK 465 CYS A 375 REMARK 465 PHE A 376 REMARK 465 GLY G 23 REMARK 465 PRO G 24 REMARK 465 MET G 25 REMARK 465 VAL G 26 REMARK 465 VAL G 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 155 O HOH A 2103 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 51 -94.23 109.48 REMARK 500 LYS A 61 30.74 -92.94 REMARK 500 GLU A 93 -72.61 -93.48 REMARK 500 ALA A 181 -150.98 -158.79 REMARK 500 THR A 201 -38.02 -135.81 REMARK 500 GLU A 232 -79.59 -103.32 REMARK 500 SER A 366 -26.08 -145.37 REMARK 500 ARG G 77 21.22 -79.94 REMARK 500 ASN G 78 13.42 -144.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2065 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2160 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2249 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2250 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH A2251 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH G2004 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH G2097 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G1151 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 167 OE1 REMARK 620 2 HOH A2111 O 88.4 REMARK 620 3 ASP G 109 OD2 100.6 82.1 REMARK 620 4 GLY G 114 O 144.7 78.0 109.4 REMARK 620 5 ALA G 116 O 98.2 169.9 89.1 100.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1378 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A1374 O3G REMARK 620 2 ATP A1374 O2B 66.4 REMARK 620 3 HOH A2003 O 141.7 90.6 REMARK 620 4 HOH A2005 O 135.3 88.4 69.6 REMARK 620 5 HOH A2006 O 82.8 92.5 67.4 137.0 REMARK 620 6 HOH A2085 O 101.9 168.4 99.2 100.9 85.5 REMARK 620 7 HOH A2099 O 73.9 88.3 138.4 68.8 154.2 88.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G1152 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 65 O REMARK 620 2 ASP G 66 OD1 72.9 REMARK 620 3 GLU G 97 OE1 81.7 107.6 REMARK 620 4 GLU G 97 OE2 126.7 90.7 55.0 REMARK 620 5 VAL G 145 O 142.3 84.9 134.9 82.4 REMARK 620 6 HOH G2045 O 69.6 93.1 137.8 163.6 82.0 REMARK 620 7 HOH G2046 O 102.7 174.9 74.0 94.1 97.4 82.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 G 1150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 1152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CBU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM ACTIN I REMARK 900 RELATED ID: 4CBW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PLASMODIUM BERGHEI ACTIN I WITH D -LOOP FROM REMARK 900 MUSCLE ACTIN DBREF 4CBX A 1 376 UNP Q4YU79 ACT2_PLABA 1 376 DBREF 4CBX G 25 149 UNP P13020 GELS_MOUSE 50 174 SEQADV 4CBX GLY A -1 UNP Q4YU79 EXPRESSION TAG SEQADV 4CBX PRO A 0 UNP Q4YU79 EXPRESSION TAG SEQADV 4CBX GLY G 23 UNP P13020 EXPRESSION TAG SEQADV 4CBX PRO G 24 UNP P13020 EXPRESSION TAG SEQRES 1 A 378 GLY PRO MET PRO GLU GLU SER ILE ALA LEU VAL VAL ASP SEQRES 2 A 378 ASN GLY SER GLY MET VAL LYS SER GLY LEU ALA GLY ASP SEQRES 3 A 378 ASP ALA PRO LYS CYS VAL PHE PRO SER ILE ILE GLY ILE SEQRES 4 A 378 PRO LYS MET PRO ASN ILE MET VAL GLY MET GLU GLN LYS SEQRES 5 A 378 GLU CYS TYR VAL GLY ASP GLU ALA GLN ASN LYS ARG GLY SEQRES 6 A 378 ILE LEU THR LEU LYS TYR PRO ILE GLU HIS GLY ILE VAL SEQRES 7 A 378 THR ASN TRP ASP ASP MET GLU LYS ILE TRP ARG HIS THR SEQRES 8 A 378 PHE PHE ASN GLU LEU ARG VAL SER PRO GLU GLU HIS PRO SEQRES 9 A 378 VAL LEU LEU THR GLU ALA PRO LEU ASN PRO LYS THR ASN SEQRES 10 A 378 ARG GLU LYS MET THR GLN ILE MET PHE GLU SER PHE ASP SEQRES 11 A 378 VAL PRO ALA MET TYR VAL SER ILE GLN ALA ILE LEU SER SEQRES 12 A 378 LEU TYR ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SEQRES 13 A 378 SER GLY ASP GLY VAL THR HIS THR VAL PRO ILE TYR GLU SEQRES 14 A 378 GLY TYR VAL LEU PRO HIS ALA ILE ASN ARG THR ASP MET SEQRES 15 A 378 ALA GLY ARG ASP LEU THR TYR TYR MET MET LYS LEU PHE SEQRES 16 A 378 THR GLU ARG GLY TYR THR PHE THR THR THR ALA GLU ARG SEQRES 17 A 378 GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR ILE SEQRES 18 A 378 ALA LEU ASP TYR ASP GLU GLU LEU LYS LYS SER GLU GLU SEQRES 19 A 378 ARG THR GLU GLU VAL GLU GLU MET TYR GLU LEU PRO ASP SEQRES 20 A 378 GLY ASN LEU ILE THR VAL GLY SER GLU ARG PHE ARG CYS SEQRES 21 A 378 PRO GLU ALA LEU PHE ASN PRO SER LEU ILE GLY ARG GLU SEQRES 22 A 378 CYS PRO GLY LEU HIS ILE THR ALA TYR GLN SER ILE MET SEQRES 23 A 378 LYS CYS ASP ILE ASP ILE ARG LYS GLU LEU TYR ASN ASN SEQRES 24 A 378 ILE VAL LEU SER GLY GLY THR THR MET TYR ASN TYR ILE SEQRES 25 A 378 GLY GLU ARG LEU THR ASN GLU MET THR SER LEU ALA PRO SEQRES 26 A 378 PRO SER MET LYS ILE LYS VAL ILE ALA PRO PRO GLU ARG SEQRES 27 A 378 LYS TYR SER VAL TRP ILE GLY GLY SER ILE LEU SER SER SEQRES 28 A 378 LEU SER THR PHE GLN LYS MET TRP ILE THR LYS GLU GLU SEQRES 29 A 378 TYR ASP GLU SER GLY PRO SER ILE VAL HIS ARG LYS CYS SEQRES 30 A 378 PHE SEQRES 1 G 127 GLY PRO MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA SEQRES 2 G 127 GLY LYS GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS SEQRES 3 G 127 PHE ASP LEU VAL PRO VAL PRO PRO ASN LEU TYR GLY ASP SEQRES 4 G 127 PHE PHE THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL SEQRES 5 G 127 GLN LEU ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR SEQRES 6 G 127 TRP LEU GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA SEQRES 7 G 127 ALA ALA ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN SEQRES 8 G 127 GLY ARG ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SEQRES 9 G 127 SER SER THR PHE SER GLY TYR PHE LYS SER GLY LEU LYS SEQRES 10 G 127 TYR LYS LYS GLY GLY VAL ALA SER GLY PHE HET ATP A1374 31 HET SO4 A1375 5 HET SO4 A1376 5 HET NA A1377 1 HET CA A1378 1 HET PO4 G1150 5 HET CA G1151 1 HET CA G1152 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 NA NA 1+ FORMUL 7 CA 3(CA 2+) FORMUL 8 PO4 O4 P 3- FORMUL 11 HOH *348(H2 O) HELIX 1 1 ASP A 56 LYS A 61 1 6 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 SER A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 SER A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 ALA A 181 GLU A 195 1 15 HELIX 7 7 THR A 202 CYS A 217 1 16 HELIX 8 8 ASP A 222 ARG A 233 1 12 HELIX 9 9 THR A 234 VAL A 237 5 4 HELIX 10 10 SER A 253 CYS A 258 1 6 HELIX 11 11 PRO A 259 PHE A 263 5 5 HELIX 12 12 ASN A 264 ILE A 268 5 5 HELIX 13 13 GLY A 274 LYS A 285 1 12 HELIX 14 14 ASP A 287 ASN A 296 1 10 HELIX 15 15 GLY A 302 MET A 306 5 5 HELIX 16 16 TYR A 309 ALA A 322 1 14 HELIX 17 17 GLU A 335 LYS A 337 5 3 HELIX 18 18 TYR A 338 SER A 348 1 11 HELIX 19 19 SER A 349 GLN A 354 5 6 HELIX 20 20 LYS A 360 GLU A 365 1 6 HELIX 21 21 SER A 366 VAL A 371 5 6 HELIX 22 22 HIS G 29 ALA G 35 1 7 HELIX 23 23 PRO G 55 TYR G 59 5 5 HELIX 24 24 SER G 94 LEU G 112 1 19 HELIX 25 25 SER G 127 TYR G 133 1 7 SHEET 1 AA 6 CYS A 29 PRO A 32 0 SHEET 2 AA 6 MET A 16 LEU A 21 -1 O VAL A 17 N PHE A 31 SHEET 3 AA 6 LEU A 8 ASN A 12 -1 O VAL A 9 N GLY A 20 SHEET 4 AA 6 VAL A 103 GLU A 107 1 O LEU A 104 N VAL A 10 SHEET 5 AA 6 ALA A 131 ILE A 136 1 O ALA A 131 N VAL A 103 SHEET 6 AA 6 ILE A 358 THR A 359 -1 O ILE A 358 N MET A 132 SHEET 1 AB 3 TYR A 53 VAL A 54 0 SHEET 2 AB 3 ILE A 35 ILE A 37 -1 O GLY A 36 N TYR A 53 SHEET 3 AB 3 THR A 66 LYS A 68 -1 O THR A 66 N ILE A 37 SHEET 1 AC 2 ILE A 71 GLU A 72 0 SHEET 2 AC 2 ILE A 75 VAL A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 AD 2 TYR A 169 VAL A 170 0 SHEET 2 AD 2 THR A 160 TYR A 166 1 O TYR A 166 N TYR A 169 SHEET 1 AE 2 ASN A 176 THR A 178 0 SHEET 2 AE 2 THR A 160 TYR A 166 -1 O THR A 160 N THR A 178 SHEET 1 AF 5 VAL A 330 ILE A 331 0 SHEET 2 AF 5 ILE A 298 SER A 301 1 O ILE A 298 N ILE A 331 SHEET 3 AF 5 GLY A 150 SER A 155 1 O ILE A 151 N VAL A 299 SHEET 4 AF 5 THR A 160 TYR A 166 -1 O HIS A 161 N ASP A 154 SHEET 5 AF 5 TYR A 169 VAL A 170 1 O TYR A 169 N TYR A 166 SHEET 1 AG 5 VAL A 330 ILE A 331 0 SHEET 2 AG 5 ILE A 298 SER A 301 1 O ILE A 298 N ILE A 331 SHEET 3 AG 5 GLY A 150 SER A 155 1 O ILE A 151 N VAL A 299 SHEET 4 AG 5 THR A 160 TYR A 166 -1 O HIS A 161 N ASP A 154 SHEET 5 AG 5 ASN A 176 THR A 178 -1 O ASN A 176 N THR A 162 SHEET 1 AH 2 GLU A 239 GLU A 242 0 SHEET 2 AH 2 LEU A 248 VAL A 251 -1 O ILE A 249 N TYR A 241 SHEET 1 GA 5 LEU G 51 PRO G 53 0 SHEET 2 GA 5 GLY G 40 VAL G 46 -1 O ARG G 45 N VAL G 52 SHEET 3 GA 5 ALA G 67 GLN G 75 -1 O ALA G 67 N VAL G 46 SHEET 4 GA 5 LEU G 81 LEU G 89 -1 O GLN G 82 N VAL G 74 SHEET 5 GA 5 ALA G 116 VAL G 122 1 O VAL G 117 N LEU G 85 SHEET 1 GB 2 ASP G 61 PHE G 63 0 SHEET 2 GB 2 LYS G 139 LYS G 141 1 O LYS G 139 N PHE G 62 LINK OE1 GLU A 167 CA CA G1151 1555 1555 2.42 LINK O3G ATP A1374 CA CA A1378 1555 1555 2.38 LINK O2B ATP A1374 CA CA A1378 1555 1555 2.35 LINK NA NA A1377 O HOH A2248 1555 1555 2.41 LINK CA CA A1378 O HOH A2003 1555 1555 2.35 LINK CA CA A1378 O HOH A2005 1555 1555 2.42 LINK CA CA A1378 O HOH A2006 1555 1555 2.35 LINK CA CA A1378 O HOH A2085 1555 1555 2.41 LINK CA CA A1378 O HOH A2099 1555 1555 2.43 LINK O HOH A2111 CA CA G1151 1555 1555 2.41 LINK O GLY G 65 CA CA G1152 1555 1555 2.24 LINK OD1 ASP G 66 CA CA G1152 1555 1555 2.36 LINK OE1 GLU G 97 CA CA G1152 1555 1555 2.39 LINK OE2 GLU G 97 CA CA G1152 1555 1555 2.36 LINK OD2 ASP G 109 CA CA G1151 1555 1555 2.41 LINK O GLY G 114 CA CA G1151 1555 1555 2.74 LINK O ALA G 116 CA CA G1151 1555 1555 2.45 LINK O VAL G 145 CA CA G1152 1555 1555 2.41 LINK CA CA G1152 O HOH G2045 1555 1555 2.39 LINK CA CA G1152 O HOH G2046 1555 1555 2.37 CISPEP 1 SER A 5 ILE A 6 0 -1.83 CISPEP 2 GLU A 51 CYS A 52 0 -3.23 SITE 1 AC1 6 ATP A1374 HOH A2003 HOH A2005 HOH A2006 SITE 2 AC1 6 HOH A2085 HOH A2099 SITE 1 AC2 25 GLY A 13 SER A 14 GLY A 15 MET A 16 SITE 2 AC2 25 LYS A 18 GLY A 156 ASP A 157 GLY A 158 SITE 3 AC2 25 VAL A 159 GLY A 182 ARG A 210 LYS A 213 SITE 4 AC2 25 GLU A 214 GLY A 302 GLY A 303 THR A 304 SITE 5 AC2 25 MET A 306 LYS A 337 CA A1378 HOH A2006 SITE 6 AC2 25 HOH A2099 HOH A2101 HOH A2105 HOH A2143 SITE 7 AC2 25 HOH A2229 SITE 1 AC3 4 ARG A 270 GLU A 271 CYS A 272 HOH A2178 SITE 1 AC4 5 ARG A 147 LYS A 329 HOH A2094 ARG G 120 SITE 2 AC4 5 HOH G2096 SITE 1 AC5 9 TYR A 309 ILE A 310 GLY A 311 GLU A 312 SITE 2 AC5 9 HOH A2201 HOH A2202 HOH A2206 HOH A2224 SITE 3 AC5 9 HOH A2245 SITE 1 AC6 3 ASN A 296 ASN A 297 HOH A2248 SITE 1 AC7 5 GLU A 167 HOH A2111 ASP G 109 GLY G 114 SITE 2 AC7 5 ALA G 116 SITE 1 AC8 6 GLY G 65 ASP G 66 GLU G 97 VAL G 145 SITE 2 AC8 6 HOH G2045 HOH G2046 CRYST1 64.248 60.908 75.518 90.00 97.24 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015565 0.000000 0.001977 0.00000 SCALE2 0.000000 0.016418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013348 0.00000