HEADER SUGAR BINDING PROTEIN 23-OCT-13 4CCI OBSLTE 26-NOV-14 4CCI TITLE STRUCTURE OF AAP A-DOMAIN (RESIDUES 351-605) FROM TITLE 2 STAPHYLOCOCCUS EPIDERMIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACCUMULATION ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A DOMAIN, RESIDUES 338-608; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS EPIDERMIDIS; SOURCE 3 ORGANISM_TAXID: 176279; SOURCE 4 STRAIN: RP62A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETFPP_1 KEYWDS SUGAR BINDING PROTEIN, L-TYPE LECTIN, STAPHYLOCOCCUS EPIDERMIDIS EXPDTA X-RAY DIFFRACTION AUTHOR K.E.ATKIN,A.S.BRENTNALL,J.P.TURKENBURG,J.R.POTTS REVDAT 2 26-NOV-14 4CCI 1 OBSLTE REVDAT 1 05-NOV-14 4CCI 0 JRNL AUTH K.E.ATKIN,A.S.BRENTNALL,J.P.TURKENBURG,J.R.POTTS JRNL TITL STRUCTURE OF AAP A-DOMAIN (RESIDUES 351-605) FROM JRNL TITL 2 STAPHYLOCOCCUS EPIDERMIDIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.33 REMARK 3 NUMBER OF REFLECTIONS : 63480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.15231 REMARK 3 R VALUE (WORKING SET) : 0.15148 REMARK 3 FREE R VALUE : 0.16800 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 3351 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.300 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.334 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4616 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.157 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.186 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.422 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19 REMARK 3 B22 (A**2) : 0.02 REMARK 3 B33 (A**2) : -0.20 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2053 ; 0.030 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1808 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2789 ; 2.362 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4166 ; 1.017 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 7.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.723 ;25.185 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;11.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.431 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.314 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2480 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 516 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1037 ; 1.134 ; 0.743 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1036 ; 1.122 ; 0.741 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1298 ; 1.678 ; 1.118 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1016 ; 2.108 ; 0.921 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4CCI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY HAS BEEN OBSOLETED ON AUTHOR REQUEST. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-13. REMARK 100 THE PDBE ID CODE IS EBI-58794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRROR PAIR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M-F) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66898 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.30 REMARK 200 RESOLUTION RANGE LOW (A) : 16.50 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.5 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.6 REMARK 200 R MERGE FOR SHELL (I) : 0.07 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 21.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LICL, 10% PEG 6000, 0.1M REMARK 280 NA-ACETATE PH5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.92650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.59900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.34650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.59900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.92650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.34650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 333 REMARK 465 PRO A 334 REMARK 465 ALA A 335 REMARK 465 MET A 336 REMARK 465 PRO A 337 REMARK 465 ALA A 338 REMARK 465 ASP A 339 REMARK 465 SER A 340 REMARK 465 SER A 341 REMARK 465 SER A 342 REMARK 465 ASN A 343 REMARK 465 ASN A 344 REMARK 465 THR A 345 REMARK 465 LYS A 346 REMARK 465 ASN A 347 REMARK 465 THR A 348 REMARK 465 ILE A 349 REMARK 465 ASP A 350 REMARK 465 ALA A 606 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 423 CB SER A 423 OG -0.087 REMARK 500 TYR A 468 CE1 TYR A 468 CZ -0.087 REMARK 500 SER A 508 CB SER A 508 OG -0.141 REMARK 500 SER A 541 CB SER A 541 OG -0.187 REMARK 500 SER A 559 CA A SER A 559 CB A 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 356 CG1 - CB - CG2 ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG A 384 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 421 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 421 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 439 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 451 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 451 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP A 494 CB - CG - OD1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP A 494 OD1 - CG - OD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ASN A 520 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 ASP A 523 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 594 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 451 -155.59 -131.60 REMARK 500 SER A 457 -6.32 75.69 REMARK 500 TYR A 549 139.34 -170.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 462 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 700 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 464 OD1 REMARK 620 2 ASP A 464 OD2 52.9 REMARK 620 3 ASP A 474 OD1 115.3 80.5 REMARK 620 4 ASP A 474 OD2 145.9 133.2 52.8 REMARK 620 5 HOH A2095 O 74.1 77.7 141.9 136.9 REMARK 620 6 HOH A2123 O 135.2 95.0 83.1 78.3 68.3 REMARK 620 7 GLY A 466 O 82.1 132.6 139.6 91.7 76.3 110.8 REMARK 620 8 GLN A 479 OE1 75.3 100.0 71.7 70.7 142.7 147.8 79.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 700 DBREF 4CCI A 336 606 UNP Q5HKE8 Q5HKE8_STAEQ 338 608 SEQADV 4CCI GLY A 333 UNP Q5HKE8 EXPRESSION TAG SEQADV 4CCI PRO A 334 UNP Q5HKE8 EXPRESSION TAG SEQADV 4CCI ALA A 335 UNP Q5HKE8 EXPRESSION TAG SEQRES 1 A 274 GLY PRO ALA MET PRO ALA ASP SER SER SER ASN ASN THR SEQRES 2 A 274 LYS ASN THR ILE ASP ILE PRO PRO THR THR VAL LYS GLY SEQRES 3 A 274 ARG ASP ASN TYR ASP PHE TYR GLY ARG VAL ASP ILE GLU SEQRES 4 A 274 SER ASN PRO THR ASP LEU ASN ALA THR ASN LEU THR ARG SEQRES 5 A 274 TYR ASN TYR GLY GLN PRO PRO GLY THR THR THR ALA GLY SEQRES 6 A 274 ALA VAL GLN PHE LYS ASN GLN VAL SER PHE ASP LYS ASP SEQRES 7 A 274 PHE ASP PHE ASN ILE ARG VAL ALA ASN ASN ARG GLN SER SEQRES 8 A 274 ASN THR THR GLY ALA ASP GLY TRP GLY PHE MET PHE SER SEQRES 9 A 274 LYS LYS ASP GLY ASP ASP PHE LEU LYS ASN GLY GLY ILE SEQRES 10 A 274 LEU ARG GLU LYS GLY THR PRO SER ALA ALA GLY PHE ARG SEQRES 11 A 274 ILE ASP THR GLY TYR TYR ASN ASN ASP PRO LEU ASP LYS SEQRES 12 A 274 ILE GLN LYS GLN ALA GLY GLN GLY TYR ARG GLY TYR GLY SEQRES 13 A 274 THR PHE VAL LYS ASN ASP SER GLN GLY ASN THR SER LYS SEQRES 14 A 274 VAL GLY SER GLY THR PRO SER THR ASP PHE LEU ASN TYR SEQRES 15 A 274 ALA ASP ASN THR THR ASN ASP LEU ASP GLY LYS PHE HIS SEQRES 16 A 274 GLY GLN LYS LEU ASN ASN VAL ASN LEU LYS TYR ASN ALA SEQRES 17 A 274 SER ASN GLN THR PHE THR ALA THR TYR ALA GLY LYS THR SEQRES 18 A 274 TRP THR ALA THR LEU SER GLU LEU GLY LEU SER PRO THR SEQRES 19 A 274 ASP SER TYR ASN PHE LEU VAL THR SER SER GLN TYR GLY SEQRES 20 A 274 ASN GLY ASN SER GLY THR TYR ALA SER GLY VAL MET ARG SEQRES 21 A 274 ALA ASP LEU ASP GLY ALA THR LEU THR TYR THR PRO LYS SEQRES 22 A 274 ALA HET CA A 700 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *285(H2 O) HELIX 1 1 GLY A 358 ASP A 360 5 3 HELIX 2 2 ASP A 439 GLY A 447 1 9 HELIX 3 3 ASP A 471 GLN A 477 1 7 HELIX 4 4 THR A 506 ASP A 510 1 5 HELIX 5 5 LEU A 558 GLY A 562 1 5 SHEET 1 AA 6 THR A 354 VAL A 356 0 SHEET 2 AA 6 THR A 599 TYR A 602 1 O LEU A 600 N VAL A 356 SHEET 3 AA 6 PHE A 411 ALA A 418 1 O ASP A 412 N THR A 601 SHEET 4 AA 6 MET A 591 ALA A 593 -1 O ARG A 592 N ALA A 418 SHEET 5 AA 6 LEU A 382 TYR A 385 -1 O THR A 383 N ALA A 593 SHEET 6 AA 6 VAL A 368 GLU A 371 -1 O ASP A 369 N ARG A 384 SHEET 1 AB 6 THR A 354 VAL A 356 0 SHEET 2 AB 6 THR A 599 TYR A 602 1 O LEU A 600 N VAL A 356 SHEET 3 AB 6 PHE A 411 ALA A 418 1 O ASP A 412 N THR A 601 SHEET 4 AB 6 ASN A 532 ASN A 539 -1 O ASN A 532 N VAL A 417 SHEET 5 AB 6 THR A 544 TYR A 549 -1 O THR A 544 N ASN A 539 SHEET 6 AB 6 LYS A 552 THR A 557 -1 O LYS A 552 N TYR A 549 SHEET 1 AC 7 TYR A 362 GLY A 366 0 SHEET 2 AC 7 ALA A 396 PHE A 401 -1 O ALA A 398 N TYR A 365 SHEET 3 AC 7 ASN A 570 SER A 576 -1 O PHE A 571 N PHE A 401 SHEET 4 AC 7 GLY A 430 SER A 436 -1 O GLY A 430 N SER A 576 SHEET 5 AC 7 ALA A 459 ASP A 464 -1 O ALA A 459 N PHE A 435 SHEET 6 AC 7 ARG A 485 ASN A 493 -1 O TYR A 487 N ASP A 464 SHEET 7 AC 7 THR A 499 LYS A 501 -1 O SER A 500 N LYS A 492 SHEET 1 AD 7 TYR A 362 GLY A 366 0 SHEET 2 AD 7 ALA A 396 PHE A 401 -1 O ALA A 398 N TYR A 365 SHEET 3 AD 7 ASN A 570 SER A 576 -1 O PHE A 571 N PHE A 401 SHEET 4 AD 7 GLY A 430 SER A 436 -1 O GLY A 430 N SER A 576 SHEET 5 AD 7 ALA A 459 ASP A 464 -1 O ALA A 459 N PHE A 435 SHEET 6 AD 7 ARG A 485 ASN A 493 -1 O TYR A 487 N ASP A 464 SHEET 7 AD 7 PHE A 511 ASN A 513 -1 O LEU A 512 N GLY A 486 SHEET 1 AE 2 THR A 499 LYS A 501 0 SHEET 2 AE 2 ARG A 485 ASN A 493 -1 O LYS A 492 N SER A 500 LINK CA CA A 700 OD1 ASP A 464 1555 1555 2.42 LINK CA CA A 700 OD2 ASP A 464 1555 1555 2.45 LINK CA CA A 700 OD1 ASP A 474 1555 1555 2.46 LINK CA CA A 700 OD2 ASP A 474 1555 1555 2.47 LINK CA CA A 700 O HOH A2095 1555 1555 2.58 LINK CA CA A 700 O HOH A2123 1555 1555 2.42 LINK CA CA A 700 O GLY A 466 1555 1555 2.31 LINK CA CA A 700 OE1 GLN A 479 1555 1555 2.61 SITE 1 AC1 6 ASP A 464 GLY A 466 ASP A 474 GLN A 479 SITE 2 AC1 6 HOH A2095 HOH A2123 CRYST1 35.853 68.693 109.198 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014558 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009158 0.00000