data_4CCV # _entry.id 4CCV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4CCV PDBE EBI-58816 WWPDB D_1290058816 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4CCV _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-10-29 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'McMahon, S.A.' 1 'Kassaar, O.' 2 'Stewart, A.J.' 3 'Naismith, J.H.' 4 # _citation.id primary _citation.title ;Crystal Structure of Histidine-Rich Glycoprotein N2 Domain Reveals Redox Activity at an Interdomain Disulfide Bridge: Implications for Angiogenic Regulation. ; _citation.journal_abbrev Blood _citation.journal_volume 123 _citation.page_first 1948 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 0006-4971 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24501222 _citation.pdbx_database_id_DOI 10.1182/BLOOD-2013-11-535963 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kassaar, O.' 1 ? primary 'Mcmahon, S.A.' 2 ? primary 'Thompson, R.' 3 ? primary 'Botting, C.H.' 4 ? primary 'Naismith, J.H.' 5 ? primary 'Stewart, A.J.' 6 ? # _cell.entry_id 4CCV _cell.length_a 77.138 _cell.length_b 77.138 _cell.length_c 69.360 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CCV _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'HISTIDINE-RICH GLYCOPROTEIN' 13343.673 1 ? ? 'N2 DOMAIN, RESIDUES 131-245' ? 2 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 non-polymer syn GLUTATHIONE 307.323 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 5 water nat water 18.015 75 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HISTIDINE-PROLINE-RICH GLYCOPROTEIN, HPRG' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SPVLFDFIEDTEPFRKSADKALEVYKSESEAYASFRVDRVERVTRVKGGERTNYYVDFSVRNCSRSHFHRHPAFGFCRAD LSFDVEASNLENPEDVIISCEVFNFEEHGNISGFR ; _entity_poly.pdbx_seq_one_letter_code_can ;SPVLFDFIEDTEPFRKSADKALEVYKSESEAYASFRVDRVERVTRVKGGERTNYYVDFSVRNCSRSHFHRHPAFGFCRAD LSFDVEASNLENPEDVIISCEVFNFEEHGNISGFR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 PRO n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 ASP n 1 7 PHE n 1 8 ILE n 1 9 GLU n 1 10 ASP n 1 11 THR n 1 12 GLU n 1 13 PRO n 1 14 PHE n 1 15 ARG n 1 16 LYS n 1 17 SER n 1 18 ALA n 1 19 ASP n 1 20 LYS n 1 21 ALA n 1 22 LEU n 1 23 GLU n 1 24 VAL n 1 25 TYR n 1 26 LYS n 1 27 SER n 1 28 GLU n 1 29 SER n 1 30 GLU n 1 31 ALA n 1 32 TYR n 1 33 ALA n 1 34 SER n 1 35 PHE n 1 36 ARG n 1 37 VAL n 1 38 ASP n 1 39 ARG n 1 40 VAL n 1 41 GLU n 1 42 ARG n 1 43 VAL n 1 44 THR n 1 45 ARG n 1 46 VAL n 1 47 LYS n 1 48 GLY n 1 49 GLY n 1 50 GLU n 1 51 ARG n 1 52 THR n 1 53 ASN n 1 54 TYR n 1 55 TYR n 1 56 VAL n 1 57 ASP n 1 58 PHE n 1 59 SER n 1 60 VAL n 1 61 ARG n 1 62 ASN n 1 63 CYS n 1 64 SER n 1 65 ARG n 1 66 SER n 1 67 HIS n 1 68 PHE n 1 69 HIS n 1 70 ARG n 1 71 HIS n 1 72 PRO n 1 73 ALA n 1 74 PHE n 1 75 GLY n 1 76 PHE n 1 77 CYS n 1 78 ARG n 1 79 ALA n 1 80 ASP n 1 81 LEU n 1 82 SER n 1 83 PHE n 1 84 ASP n 1 85 VAL n 1 86 GLU n 1 87 ALA n 1 88 SER n 1 89 ASN n 1 90 LEU n 1 91 GLU n 1 92 ASN n 1 93 PRO n 1 94 GLU n 1 95 ASP n 1 96 VAL n 1 97 ILE n 1 98 ILE n 1 99 SER n 1 100 CYS n 1 101 GLU n 1 102 VAL n 1 103 PHE n 1 104 ASN n 1 105 PHE n 1 106 GLU n 1 107 GLU n 1 108 HIS n 1 109 GLY n 1 110 ASN n 1 111 ILE n 1 112 SER n 1 113 GLY n 1 114 PHE n 1 115 ARG n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name RABBIT _entity_src_nat.pdbx_organism_scientific 'ORYCTOLAGUS CUNICULUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 9986 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'PURIFIED FROM RABBIT SERUM' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HRG_RABIT _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q28640 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4CCV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q28640 _struct_ref_seq.db_align_beg 131 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 245 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 123 _struct_ref_seq.pdbx_auth_seq_align_end 237 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 GSH non-polymer . GLUTATHIONE ? 'C10 H17 N3 O6 S' 307.323 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4CCV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.33 _exptl_crystal.density_percent_sol 71 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '22.5% PEG MME 5000, 0.073M POTASSIUM SODIUM TARTRATE, 0.1M MES PH6.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2013-06-26 _diffrn_detector.details 'TORPIDAL MIRROR' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SINGLE BOUNCE 22MM' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength 0.92 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4CCV _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.71 _reflns.d_resolution_high 1.93 _reflns.number_obs 17163 _reflns.number_all ? _reflns.percent_possible_obs 93.2 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.30 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.93 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 69.2 _reflns_shell.Rmerge_I_obs 0.33 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 2.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4CCV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16201 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.71 _refine.ls_d_res_high 1.93 _refine.ls_percent_reflns_obs 93.20 _refine.ls_R_factor_obs 0.18671 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18472 _refine.ls_R_factor_R_free 0.22524 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 863 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 42.806 _refine.aniso_B[1][1] 0.79 _refine.aniso_B[2][2] 0.79 _refine.aniso_B[3][3] -2.56 _refine.aniso_B[1][2] 0.39 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES WITH TLS ADDED. LYS 138 HAS NO DENSITY PRESENT BEYOND THE CG ATOM. THE SEQUENCE HAS BEEN CHECKED AGAINST BLAST AND CONFIRMED AS A LYS. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.114 _refine.pdbx_overall_ESU_R_Free 0.118 _refine.overall_SU_ML 0.099 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.243 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 941 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 77 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 1093 _refine_hist.d_res_high 1.93 _refine_hist.d_res_low 33.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.019 ? 1055 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 934 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.019 2.002 ? 1424 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.394 3.000 ? 2139 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.784 5.000 ? 118 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.904 22.881 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.088 15.000 ? 158 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.990 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.111 0.200 ? 154 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1172 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.015 0.020 ? 267 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.712 2.079 ? 463 'X-RAY DIFFRACTION' ? r_mcbond_other 1.679 2.077 ? 462 'X-RAY DIFFRACTION' ? r_mcangle_it 2.430 3.107 ? 578 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.693 2.986 ? 591 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.930 _refine_ls_shell.d_res_low 1.980 _refine_ls_shell.number_reflns_R_work 856 _refine_ls_shell.R_factor_R_work 0.345 _refine_ls_shell.percent_reflns_obs 66.79 _refine_ls_shell.R_factor_R_free 0.398 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4CCV _struct.title ;Crystal structure of histidine-rich glycoprotein N2 domain reveals redox activity at an interdomain disulfide bridge: Implications for the regulation of angiogenesis ; _struct.pdbx_descriptor 'HISTIDINE-RICH GLYCOPROTEIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4CCV _struct_keywords.pdbx_keywords 'BLOOD CLOTTING' _struct_keywords.text 'BLOOD CLOTTING, COAGULATION, CYSTATIN, S-GLUTATHIONYLATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? PRO A 13 ? THR A 133 PRO A 135 5 ? 3 HELX_P HELX_P2 2 PHE A 14 ? GLU A 28 ? PHE A 136 GLU A 150 1 ? 15 HELX_P HELX_P3 3 SER A 29 ? ALA A 33 ? SER A 151 ALA A 155 5 ? 5 HELX_P HELX_P4 4 SER A 64 ? HIS A 67 ? SER A 186 HIS A 189 5 ? 4 HELX_P HELX_P5 5 GLU A 106 ? HIS A 108 ? GLU A 228 HIS A 230 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 100 SG ? ? A CYS 199 A CYS 222 1_555 ? ? ? ? ? ? ? 2.104 ? ? covale1 covale one ? A ASN 62 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 184 B NAG 1 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale2 covale one ? A CYS 63 SG ? ? ? 1_555 C GSH . SG2 ? ? A CYS 185 A GSH 1238 1_555 ? ? ? ? ? ? ? 2.318 ? ? covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.430 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 4 ? PHE A 7 ? LEU A 126 PHE A 129 AA 2 PHE A 35 ? LYS A 47 ? PHE A 157 LYS A 169 AA 3 ARG A 51 ? ASN A 62 ? ARG A 173 ASN A 184 AA 4 ALA A 73 ? ASP A 84 ? ALA A 195 ASP A 206 AA 5 ASP A 95 ? ASN A 104 ? ASP A 217 ASN A 226 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ASP A 6 ? N ASP A 128 O ARG A 45 ? O ARG A 167 AA 2 3 N VAL A 46 ? N VAL A 168 O ASN A 53 ? O ASN A 175 AA 3 4 N VAL A 60 ? N VAL A 182 O GLY A 75 ? O GLY A 197 AA 4 5 N SER A 82 ? N SER A 204 O ASP A 95 ? O ASP A 217 # _database_PDB_matrix.entry_id 4CCV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4CCV _atom_sites.fract_transf_matrix[1][1] 0.012964 _atom_sites.fract_transf_matrix[1][2] 0.007485 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014969 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014418 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 123 123 SER SER A . n A 1 2 PRO 2 124 124 PRO PRO A . n A 1 3 VAL 3 125 125 VAL VAL A . n A 1 4 LEU 4 126 126 LEU LEU A . n A 1 5 PHE 5 127 127 PHE PHE A . n A 1 6 ASP 6 128 128 ASP ASP A . n A 1 7 PHE 7 129 129 PHE PHE A . n A 1 8 ILE 8 130 130 ILE ILE A . n A 1 9 GLU 9 131 131 GLU GLU A . n A 1 10 ASP 10 132 132 ASP ASP A . n A 1 11 THR 11 133 133 THR THR A . n A 1 12 GLU 12 134 134 GLU GLU A . n A 1 13 PRO 13 135 135 PRO PRO A . n A 1 14 PHE 14 136 136 PHE PHE A . n A 1 15 ARG 15 137 137 ARG ARG A . n A 1 16 LYS 16 138 138 LYS LYS A . n A 1 17 SER 17 139 139 SER SER A . n A 1 18 ALA 18 140 140 ALA ALA A . n A 1 19 ASP 19 141 141 ASP ASP A . n A 1 20 LYS 20 142 142 LYS LYS A . n A 1 21 ALA 21 143 143 ALA ALA A . n A 1 22 LEU 22 144 144 LEU LEU A . n A 1 23 GLU 23 145 145 GLU GLU A . n A 1 24 VAL 24 146 146 VAL VAL A . n A 1 25 TYR 25 147 147 TYR TYR A . n A 1 26 LYS 26 148 148 LYS LYS A . n A 1 27 SER 27 149 149 SER SER A . n A 1 28 GLU 28 150 150 GLU GLU A . n A 1 29 SER 29 151 151 SER SER A . n A 1 30 GLU 30 152 152 GLU GLU A . n A 1 31 ALA 31 153 153 ALA ALA A . n A 1 32 TYR 32 154 154 TYR TYR A . n A 1 33 ALA 33 155 155 ALA ALA A . n A 1 34 SER 34 156 156 SER SER A . n A 1 35 PHE 35 157 157 PHE PHE A . n A 1 36 ARG 36 158 158 ARG ARG A . n A 1 37 VAL 37 159 159 VAL VAL A . n A 1 38 ASP 38 160 160 ASP ASP A . n A 1 39 ARG 39 161 161 ARG ARG A . n A 1 40 VAL 40 162 162 VAL VAL A . n A 1 41 GLU 41 163 163 GLU GLU A . n A 1 42 ARG 42 164 164 ARG ARG A . n A 1 43 VAL 43 165 165 VAL VAL A . n A 1 44 THR 44 166 166 THR THR A . n A 1 45 ARG 45 167 167 ARG ARG A . n A 1 46 VAL 46 168 168 VAL VAL A . n A 1 47 LYS 47 169 169 LYS LYS A . n A 1 48 GLY 48 170 170 GLY GLY A . n A 1 49 GLY 49 171 171 GLY GLY A . n A 1 50 GLU 50 172 172 GLU GLU A . n A 1 51 ARG 51 173 173 ARG ARG A . n A 1 52 THR 52 174 174 THR THR A . n A 1 53 ASN 53 175 175 ASN ASN A . n A 1 54 TYR 54 176 176 TYR TYR A . n A 1 55 TYR 55 177 177 TYR TYR A . n A 1 56 VAL 56 178 178 VAL VAL A . n A 1 57 ASP 57 179 179 ASP ASP A . n A 1 58 PHE 58 180 180 PHE PHE A . n A 1 59 SER 59 181 181 SER SER A . n A 1 60 VAL 60 182 182 VAL VAL A . n A 1 61 ARG 61 183 183 ARG ARG A . n A 1 62 ASN 62 184 184 ASN ASN A . n A 1 63 CYS 63 185 185 CYS CYS A . n A 1 64 SER 64 186 186 SER SER A . n A 1 65 ARG 65 187 187 ARG ARG A . n A 1 66 SER 66 188 188 SER SER A . n A 1 67 HIS 67 189 189 HIS HIS A . n A 1 68 PHE 68 190 190 PHE PHE A . n A 1 69 HIS 69 191 191 HIS HIS A . n A 1 70 ARG 70 192 192 ARG ARG A . n A 1 71 HIS 71 193 193 HIS HIS A . n A 1 72 PRO 72 194 194 PRO PRO A . n A 1 73 ALA 73 195 195 ALA ALA A . n A 1 74 PHE 74 196 196 PHE PHE A . n A 1 75 GLY 75 197 197 GLY GLY A . n A 1 76 PHE 76 198 198 PHE PHE A . n A 1 77 CYS 77 199 199 CYS CYS A . n A 1 78 ARG 78 200 200 ARG ARG A . n A 1 79 ALA 79 201 201 ALA ALA A . n A 1 80 ASP 80 202 202 ASP ASP A . n A 1 81 LEU 81 203 203 LEU LEU A . n A 1 82 SER 82 204 204 SER SER A . n A 1 83 PHE 83 205 205 PHE PHE A . n A 1 84 ASP 84 206 206 ASP ASP A . n A 1 85 VAL 85 207 207 VAL VAL A . n A 1 86 GLU 86 208 208 GLU GLU A . n A 1 87 ALA 87 209 209 ALA ALA A . n A 1 88 SER 88 210 210 SER SER A . n A 1 89 ASN 89 211 211 ASN ASN A . n A 1 90 LEU 90 212 212 LEU LEU A . n A 1 91 GLU 91 213 213 GLU GLU A . n A 1 92 ASN 92 214 214 ASN ASN A . n A 1 93 PRO 93 215 215 PRO PRO A . n A 1 94 GLU 94 216 216 GLU GLU A . n A 1 95 ASP 95 217 217 ASP ASP A . n A 1 96 VAL 96 218 218 VAL VAL A . n A 1 97 ILE 97 219 219 ILE ILE A . n A 1 98 ILE 98 220 220 ILE ILE A . n A 1 99 SER 99 221 221 SER SER A . n A 1 100 CYS 100 222 222 CYS CYS A . n A 1 101 GLU 101 223 223 GLU GLU A . n A 1 102 VAL 102 224 224 VAL VAL A . n A 1 103 PHE 103 225 225 PHE PHE A . n A 1 104 ASN 104 226 226 ASN ASN A . n A 1 105 PHE 105 227 227 PHE PHE A . n A 1 106 GLU 106 228 228 GLU GLU A . n A 1 107 GLU 107 229 229 GLU GLU A . n A 1 108 HIS 108 230 230 HIS HIS A . n A 1 109 GLY 109 231 231 GLY GLY A . n A 1 110 ASN 110 232 232 ASN ASN A . n A 1 111 ILE 111 233 233 ILE ILE A . n A 1 112 SER 112 234 234 SER SER A . n A 1 113 GLY 113 235 235 GLY GLY A . n A 1 114 PHE 114 236 236 PHE PHE A . n A 1 115 ARG 115 237 237 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GSH 1 1238 1238 GSH GSH A . D 4 GOL 1 1242 1242 GOL GOL A . E 4 GOL 1 1243 1243 GOL GOL A . F 4 GOL 1 1244 1244 GOL GOL A . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . G 5 HOH 20 2020 2020 HOH HOH A . G 5 HOH 21 2021 2021 HOH HOH A . G 5 HOH 22 2022 2022 HOH HOH A . G 5 HOH 23 2023 2023 HOH HOH A . G 5 HOH 24 2024 2024 HOH HOH A . G 5 HOH 25 2025 2025 HOH HOH A . G 5 HOH 26 2026 2026 HOH HOH A . G 5 HOH 27 2027 2027 HOH HOH A . G 5 HOH 28 2028 2028 HOH HOH A . G 5 HOH 29 2029 2029 HOH HOH A . G 5 HOH 30 2030 2030 HOH HOH A . G 5 HOH 31 2031 2031 HOH HOH A . G 5 HOH 32 2032 2032 HOH HOH A . G 5 HOH 33 2033 2033 HOH HOH A . G 5 HOH 34 2034 2034 HOH HOH A . G 5 HOH 35 2035 2035 HOH HOH A . G 5 HOH 36 2036 2036 HOH HOH A . G 5 HOH 37 2037 2037 HOH HOH A . G 5 HOH 38 2038 2038 HOH HOH A . G 5 HOH 39 2039 2039 HOH HOH A . G 5 HOH 40 2040 2040 HOH HOH A . G 5 HOH 41 2041 2041 HOH HOH A . G 5 HOH 42 2042 2042 HOH HOH A . G 5 HOH 43 2043 2043 HOH HOH A . G 5 HOH 44 2044 2044 HOH HOH A . G 5 HOH 45 2045 2045 HOH HOH A . G 5 HOH 46 2046 2046 HOH HOH A . G 5 HOH 47 2047 2047 HOH HOH A . G 5 HOH 48 2048 2048 HOH HOH A . G 5 HOH 49 2049 2049 HOH HOH A . G 5 HOH 50 2050 2050 HOH HOH A . G 5 HOH 51 2051 2051 HOH HOH A . G 5 HOH 52 2052 2052 HOH HOH A . G 5 HOH 53 2053 2053 HOH HOH A . G 5 HOH 54 2054 2054 HOH HOH A . G 5 HOH 55 2055 2055 HOH HOH A . G 5 HOH 56 2056 2056 HOH HOH A . G 5 HOH 57 2057 2057 HOH HOH A . G 5 HOH 58 2058 2058 HOH HOH A . G 5 HOH 59 2059 2059 HOH HOH A . G 5 HOH 60 2060 2060 HOH HOH A . G 5 HOH 61 2061 2061 HOH HOH A . G 5 HOH 62 2062 2062 HOH HOH A . G 5 HOH 63 2063 2063 HOH HOH A . G 5 HOH 64 2064 2064 HOH HOH A . G 5 HOH 65 2065 2065 HOH HOH A . G 5 HOH 66 2066 2066 HOH HOH A . G 5 HOH 67 2067 2067 HOH HOH A . G 5 HOH 68 2068 2068 HOH HOH A . G 5 HOH 69 2069 2069 HOH HOH A . G 5 HOH 70 2070 2070 HOH HOH A . G 5 HOH 71 2071 2071 HOH HOH A . G 5 HOH 72 2072 2072 HOH HOH A . G 5 HOH 73 2073 2073 HOH HOH A . G 5 HOH 74 2074 2074 HOH HOH A . G 5 HOH 75 2075 2075 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 62 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 184 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-19 2 'Structure model' 1 1 2014-04-02 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_database_status 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' struct_asym 15 3 'Structure model' struct_conn 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_database_status.status_code_sf' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_struct_conn.pdbx_dist_value' 19 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 3 'Structure model' '_struct_conn.pdbx_role' 21 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -35.2010 18.2340 -10.0180 0.1369 0.0863 0.2940 0.0077 0.0259 0.0375 18.7377 5.7847 6.0083 -9.9029 -7.6982 3.9435 -0.4381 -0.0928 -1.0727 0.1819 0.0083 0.3218 0.6112 0.1179 0.4299 'X-RAY DIFFRACTION' 2 ? refined -28.9750 19.7640 -29.7980 0.0549 0.0383 0.2748 -0.0018 0.0296 -0.0166 4.2404 8.5119 10.9771 -2.3116 2.1980 -4.7316 -0.1796 0.0919 -0.0872 -0.2442 0.0324 -0.2082 0.5546 0.2507 0.1472 'X-RAY DIFFRACTION' 3 ? refined -28.8400 22.7430 -23.3590 0.0714 0.0153 0.3118 0.0037 -0.0038 -0.0232 3.4863 1.9046 4.8979 0.9764 -1.6912 -0.5657 -0.2372 -0.0785 -0.1067 -0.0845 -0.0084 -0.1413 0.2202 0.1885 0.2456 'X-RAY DIFFRACTION' 4 ? refined -23.6910 27.7320 -27.8070 0.0594 0.0452 0.2740 0.0031 -0.0023 0.0276 5.0197 2.9996 3.0233 3.4440 -2.4169 -1.1416 -0.3062 0.2004 -0.0973 -0.2404 0.2034 -0.2024 0.0353 -0.0323 0.1028 'X-RAY DIFFRACTION' 5 ? refined -39.4510 12.2000 -23.0640 0.1919 0.1070 0.2955 -0.0617 -0.0266 0.0030 6.8100 12.5241 10.3585 -0.5302 1.9757 -0.5703 0.3476 -0.2631 -0.8312 0.3669 -0.1120 0.2043 0.9210 -0.2176 -0.2356 'X-RAY DIFFRACTION' 6 ? refined -19.5880 38.3630 -27.2180 0.1194 0.0972 0.3233 -0.0020 -0.0219 -0.0212 15.4433 7.0643 0.6720 10.2073 -0.5726 -0.5448 -0.0817 -0.1193 0.6894 -0.0669 0.0319 0.2702 -0.1539 0.0473 0.0498 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 123 ? ? A 133 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 134 ? ? A 151 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 152 ? ? A 172 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 173 ? ? A 202 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 203 ? ? A 217 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 218 ? ? A 237 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.8.0049 ? 1 xia2 'data reduction' . ? 2 xia2 'data scaling' . ? 3 PHENIX phasing . ? 4 # _pdbx_entry_details.entry_id 4CCV _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE CRYSTALLISED IS A SECTION OF THE FULL LENGTH PROTEIN REFERENCED BY UNIPROT Q28640.1 ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 173 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 173 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 173 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.39 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.09 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 160 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -90.73 _pdbx_validate_torsion.psi -79.71 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 1239 n B 2 NAG 2 B NAG 2 A NAG 1240 n B 2 BMA 3 B BMA 3 A BMA 1241 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLUTATHIONE GSH 4 GLYCEROL GOL 5 water HOH #