HEADER BLOOD CLOTTING 29-OCT-13 4CCV TITLE CRYSTAL STRUCTURE OF HISTIDINE-RICH GLYCOPROTEIN N2 DOMAIN REVEALS TITLE 2 REDOX ACTIVITY AT AN INTERDOMAIN DISULFIDE BRIDGE: IMPLICATIONS FOR TITLE 3 THE REGULATION OF ANGIOGENESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE-RICH GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N2 DOMAIN, RESIDUES 131-245; COMPND 5 SYNONYM: HISTIDINE-PROLINE-RICH GLYCOPROTEIN, HPRG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 OTHER_DETAILS: PURIFIED FROM RABBIT SERUM KEYWDS BLOOD CLOTTING, COAGULATION, CYSTATIN, S-GLUTATHIONYLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MCMAHON,O.KASSAAR,A.J.STEWART,J.H.NAISMITH REVDAT 3 29-JUL-20 4CCV 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 02-APR-14 4CCV 1 JRNL REVDAT 1 19-FEB-14 4CCV 0 JRNL AUTH O.KASSAAR,S.A.MCMAHON,R.THOMPSON,C.H.BOTTING,J.H.NAISMITH, JRNL AUTH 2 A.J.STEWART JRNL TITL CRYSTAL STRUCTURE OF HISTIDINE-RICH GLYCOPROTEIN N2 DOMAIN JRNL TITL 2 REVEALS REDOX ACTIVITY AT AN INTERDOMAIN DISULFIDE BRIDGE: JRNL TITL 3 IMPLICATIONS FOR ANGIOGENIC REGULATION. JRNL REF BLOOD V. 123 1948 2014 JRNL REFN ISSN 0006-4971 JRNL PMID 24501222 JRNL DOI 10.1182/BLOOD-2013-11-535963 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 16201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 856 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 941 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.243 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1055 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 934 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1424 ; 2.019 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2139 ; 2.394 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 118 ; 6.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;29.904 ;22.881 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 158 ;12.088 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 154 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1172 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 267 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 463 ; 1.712 ; 2.079 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 462 ; 1.679 ; 2.077 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 578 ; 2.430 ; 3.107 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 591 ; 3.693 ; 2.986 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2010 18.2340 -10.0180 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.0863 REMARK 3 T33: 0.2940 T12: 0.0077 REMARK 3 T13: 0.0259 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 18.7377 L22: 5.7847 REMARK 3 L33: 6.0083 L12: -9.9029 REMARK 3 L13: -7.6982 L23: 3.9435 REMARK 3 S TENSOR REMARK 3 S11: -0.4381 S12: -0.0928 S13: -1.0727 REMARK 3 S21: 0.1819 S22: 0.0083 S23: 0.3218 REMARK 3 S31: 0.6112 S32: 0.1179 S33: 0.4299 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): -28.9750 19.7640 -29.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.0549 T22: 0.0383 REMARK 3 T33: 0.2748 T12: -0.0018 REMARK 3 T13: 0.0296 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 4.2404 L22: 8.5119 REMARK 3 L33: 10.9771 L12: -2.3116 REMARK 3 L13: 2.1980 L23: -4.7316 REMARK 3 S TENSOR REMARK 3 S11: -0.1796 S12: 0.0919 S13: -0.0872 REMARK 3 S21: -0.2442 S22: 0.0324 S23: -0.2082 REMARK 3 S31: 0.5546 S32: 0.2507 S33: 0.1472 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8400 22.7430 -23.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0153 REMARK 3 T33: 0.3118 T12: 0.0037 REMARK 3 T13: -0.0038 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 3.4863 L22: 1.9046 REMARK 3 L33: 4.8979 L12: 0.9764 REMARK 3 L13: -1.6912 L23: -0.5657 REMARK 3 S TENSOR REMARK 3 S11: -0.2372 S12: -0.0785 S13: -0.1067 REMARK 3 S21: -0.0845 S22: -0.0084 S23: -0.1413 REMARK 3 S31: 0.2202 S32: 0.1885 S33: 0.2456 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -23.6910 27.7320 -27.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.0594 T22: 0.0452 REMARK 3 T33: 0.2740 T12: 0.0031 REMARK 3 T13: -0.0023 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 5.0197 L22: 2.9996 REMARK 3 L33: 3.0233 L12: 3.4440 REMARK 3 L13: -2.4169 L23: -1.1416 REMARK 3 S TENSOR REMARK 3 S11: -0.3062 S12: 0.2004 S13: -0.0973 REMARK 3 S21: -0.2404 S22: 0.2034 S23: -0.2024 REMARK 3 S31: 0.0353 S32: -0.0323 S33: 0.1028 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4510 12.2000 -23.0640 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1070 REMARK 3 T33: 0.2955 T12: -0.0617 REMARK 3 T13: -0.0266 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.8100 L22: 12.5241 REMARK 3 L33: 10.3585 L12: -0.5302 REMARK 3 L13: 1.9757 L23: -0.5703 REMARK 3 S TENSOR REMARK 3 S11: 0.3476 S12: -0.2631 S13: -0.8312 REMARK 3 S21: 0.3669 S22: -0.1120 S23: 0.2043 REMARK 3 S31: 0.9210 S32: -0.2176 S33: -0.2356 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5880 38.3630 -27.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.0972 REMARK 3 T33: 0.3233 T12: -0.0020 REMARK 3 T13: -0.0219 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 15.4433 L22: 7.0643 REMARK 3 L33: 0.6720 L12: 10.2073 REMARK 3 L13: -0.5726 L23: -0.5448 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: -0.1193 S13: 0.6894 REMARK 3 S21: -0.0669 S22: 0.0319 S23: 0.2702 REMARK 3 S31: -0.1539 S32: 0.0473 S33: 0.0498 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. LYS 138 HAS NO DENSITY REMARK 3 PRESENT BEYOND THE CG ATOM. THE SEQUENCE HAS BEEN CHECKED REMARK 3 AGAINST BLAST AND CONFIRMED AS A LYS. REMARK 4 REMARK 4 4CCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE 22MM REMARK 200 OPTICS : TORPIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 33.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG MME 5000, 0.073M POTASSIUM REMARK 280 SODIUM TARTRATE, 0.1M MES PH6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.12000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.24000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.24000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 160 -79.71 -90.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE CRYSTALLISED IS A SECTION OF THE FULL LENGTH REMARK 999 PROTEIN REFERENCED BY UNIPROT Q28640.1 DBREF 4CCV A 123 237 UNP Q28640 HRG_RABIT 131 245 SEQRES 1 A 115 SER PRO VAL LEU PHE ASP PHE ILE GLU ASP THR GLU PRO SEQRES 2 A 115 PHE ARG LYS SER ALA ASP LYS ALA LEU GLU VAL TYR LYS SEQRES 3 A 115 SER GLU SER GLU ALA TYR ALA SER PHE ARG VAL ASP ARG SEQRES 4 A 115 VAL GLU ARG VAL THR ARG VAL LYS GLY GLY GLU ARG THR SEQRES 5 A 115 ASN TYR TYR VAL ASP PHE SER VAL ARG ASN CYS SER ARG SEQRES 6 A 115 SER HIS PHE HIS ARG HIS PRO ALA PHE GLY PHE CYS ARG SEQRES 7 A 115 ALA ASP LEU SER PHE ASP VAL GLU ALA SER ASN LEU GLU SEQRES 8 A 115 ASN PRO GLU ASP VAL ILE ILE SER CYS GLU VAL PHE ASN SEQRES 9 A 115 PHE GLU GLU HIS GLY ASN ILE SER GLY PHE ARG MODRES 4CCV ASN A 184 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET GSH A1238 20 HET GOL A1242 6 HET GOL A1243 6 HET GOL A1244 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GSH GLUTATHIONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 GSH C10 H17 N3 O6 S FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *75(H2 O) HELIX 1 1 THR A 133 PRO A 135 5 3 HELIX 2 2 PHE A 136 GLU A 150 1 15 HELIX 3 3 SER A 151 ALA A 155 5 5 HELIX 4 4 SER A 186 HIS A 189 5 4 HELIX 5 5 GLU A 228 HIS A 230 5 3 SHEET 1 AA 5 LEU A 126 PHE A 129 0 SHEET 2 AA 5 PHE A 157 LYS A 169 -1 O ARG A 167 N ASP A 128 SHEET 3 AA 5 ARG A 173 ASN A 184 -1 O ASN A 175 N VAL A 168 SHEET 4 AA 5 ALA A 195 ASP A 206 -1 O GLY A 197 N VAL A 182 SHEET 5 AA 5 ASP A 217 ASN A 226 -1 O ASP A 217 N SER A 204 SSBOND 1 CYS A 199 CYS A 222 1555 1555 2.10 LINK ND2 ASN A 184 C1 NAG B 1 1555 1555 1.44 LINK SG CYS A 185 SG2 GSH A1238 1555 1555 2.32 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 CRYST1 77.138 77.138 69.360 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012964 0.007485 0.000000 0.00000 SCALE2 0.000000 0.014969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014418 0.00000