HEADER HYDROLASE 29-OCT-13 4CD1 TITLE RNNTPDASE2 IN COMPLEX WITH PSB-071 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN, RESIDUES 28-462; COMPND 5 SYNONYM: NTPDASE 2, CD39 ANTIGEN-LIKE 1, ECTO-ATP DIPHOSPHOHYDROLASE COMPND 6 2, ECTO-ATPDASE 2, ECTO-ATPASE 2, NTPDASE2; COMPND 7 EC: 3.6.1.-, 3.6.1.5; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, APYRASE, ATPASE, PURINERGIC SIGNALLING, CD39, DRUG DESIGN, KEYWDS 2 INHIBITOR, NTPDASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,P.SCHAEFER,N.STRAETER REVDAT 3 06-NOV-24 4CD1 1 REMARK REVDAT 2 12-MAR-14 4CD1 1 JRNL REVDAT 1 12-FEB-14 4CD1 0 JRNL AUTH M.ZEBISCH,Y.BAQI,P.SCHAFER,C.E.MULLER,N.STRATER JRNL TITL CRYSTAL STRUCTURE OF NTPDASE2 IN COMPLEX WITH THE JRNL TITL 2 SULFOANTHRAQUINONE INHIBITOR PSB-071. JRNL REF J.STRUCT.BIOL. V. 185 336 2014 JRNL REFN ISSN 1047-8477 JRNL PMID 24462745 JRNL DOI 10.1016/J.JSB.2014.01.005 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 28777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3173 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.68000 REMARK 3 B22 (A**2) : 6.08000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3352 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4576 ; 2.093 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 404 ; 6.990 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;35.967 ;23.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;16.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;21.559 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2578 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 162 REMARK 3 RESIDUE RANGE : A 436 A 451 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2000 41.6894 11.2146 REMARK 3 T TENSOR REMARK 3 T11: 0.3753 T22: 0.0274 REMARK 3 T33: 0.1542 T12: -0.0261 REMARK 3 T13: -0.0024 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 3.4761 L22: 2.8301 REMARK 3 L33: 4.2146 L12: 0.4479 REMARK 3 L13: -1.2828 L23: 0.4427 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.1798 S13: 0.3757 REMARK 3 S21: -0.4654 S22: 0.0989 S23: -0.0223 REMARK 3 S31: -0.4748 S32: 0.1675 S33: -0.1033 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 179 REMARK 3 RESIDUE RANGE : A 427 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1042 25.8000 9.2559 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.1061 REMARK 3 T33: 0.0929 T12: -0.0127 REMARK 3 T13: -0.0004 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.2406 L22: 2.9838 REMARK 3 L33: 5.4550 L12: -0.6190 REMARK 3 L13: -1.0419 L23: 1.8453 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.2765 S13: 0.0153 REMARK 3 S21: -0.0594 S22: 0.0060 S23: -0.3142 REMARK 3 S31: -0.0557 S32: 0.4162 S33: -0.0749 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3206 10.5347 -4.6838 REMARK 3 T TENSOR REMARK 3 T11: 0.4008 T22: 0.1803 REMARK 3 T33: 0.1960 T12: 0.0291 REMARK 3 T13: -0.0149 T23: -0.0978 REMARK 3 L TENSOR REMARK 3 L11: 4.4041 L22: 3.8658 REMARK 3 L33: 6.7206 L12: -3.5608 REMARK 3 L13: -5.1694 L23: 4.9822 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: 0.3326 S13: -0.4226 REMARK 3 S21: 0.0648 S22: -0.5954 S23: 0.5474 REMARK 3 S31: 0.0888 S32: -0.6561 S33: 0.6612 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 426 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0809 21.6881 29.2963 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.0504 REMARK 3 T33: 0.1232 T12: 0.0048 REMARK 3 T13: 0.0225 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 2.9256 L22: 1.1493 REMARK 3 L33: 3.3983 L12: 0.5560 REMARK 3 L13: 1.2046 L23: 0.2698 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: -0.3057 S13: -0.1957 REMARK 3 S21: 0.0933 S22: -0.0789 S23: -0.0810 REMARK 3 S31: 0.0073 S32: 0.0999 S33: 0.0581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058841. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30632 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.50350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.19450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.19450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.50350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 ALA A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 ASN A 19 REMARK 465 ASP A 20 REMARK 465 ASP A 21 REMARK 465 ASP A 22 REMARK 465 ASP A 23 REMARK 465 LYS A 24 REMARK 465 SER A 25 REMARK 465 PRO A 26 REMARK 465 ASP A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 GLN A 30 REMARK 465 ASP A 31 REMARK 465 VAL A 32 REMARK 465 ARG A 33 REMARK 465 GLU A 34 REMARK 465 PRO A 35 REMARK 465 PRO A 36 REMARK 465 ALA A 37 REMARK 465 ARG A 289 REMARK 465 PRO A 290 REMARK 465 ARG A 291 REMARK 465 ALA A 292 REMARK 465 PHE A 293 REMARK 465 ASN A 294 REMARK 465 GLY A 295 REMARK 465 SER A 296 REMARK 465 LEU A 452 REMARK 465 PRO A 453 REMARK 465 GLY A 454 REMARK 465 LEU A 455 REMARK 465 ARG A 456 REMARK 465 LYS A 457 REMARK 465 GLY A 458 REMARK 465 THR A 459 REMARK 465 HIS A 460 REMARK 465 PHE A 461 REMARK 465 SER A 462 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 436 CB TRP A 436 CG 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 164 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 201 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ILE A 298 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 411 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 411 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 51.30 -150.72 REMARK 500 THR A 122 -130.41 -125.72 REMARK 500 SER A 132 79.27 -151.67 REMARK 500 LYS A 194 120.44 -39.20 REMARK 500 SER A 329 -82.98 -86.13 REMARK 500 SER A 346 -126.23 41.86 REMARK 500 THR A 357 -60.90 -92.35 REMARK 500 ASP A 416 -168.89 -124.30 REMARK 500 ASP A 431 18.24 57.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 186 GLY A 187 -48.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 1-AMINO-4-(3-METHYLPHENYL)AMINO-9,10-DIOXO-9, REMARK 600 10-DIHYDROANTHRACENE-2-SULFONATE (071): PSB-071 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8E9 A 1452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8E9 A 1453 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CD3 RELATED DB: PDB REMARK 900 RNNTPDASE2 X4 VARIANT IN COMPLEX WITH PSB-071 DBREF 4CD1 A 28 462 UNP O35795 ENTP2_RAT 28 462 SEQADV 4CD1 MET A 6 UNP O35795 EXPRESSION TAG SEQADV 4CD1 ALA A 7 UNP O35795 EXPRESSION TAG SEQADV 4CD1 HIS A 8 UNP O35795 EXPRESSION TAG SEQADV 4CD1 HIS A 9 UNP O35795 EXPRESSION TAG SEQADV 4CD1 HIS A 10 UNP O35795 EXPRESSION TAG SEQADV 4CD1 HIS A 11 UNP O35795 EXPRESSION TAG SEQADV 4CD1 HIS A 12 UNP O35795 EXPRESSION TAG SEQADV 4CD1 HIS A 13 UNP O35795 EXPRESSION TAG SEQADV 4CD1 VAL A 14 UNP O35795 EXPRESSION TAG SEQADV 4CD1 GLY A 15 UNP O35795 EXPRESSION TAG SEQADV 4CD1 THR A 16 UNP O35795 EXPRESSION TAG SEQADV 4CD1 GLY A 17 UNP O35795 EXPRESSION TAG SEQADV 4CD1 SER A 18 UNP O35795 EXPRESSION TAG SEQADV 4CD1 ASN A 19 UNP O35795 EXPRESSION TAG SEQADV 4CD1 ASP A 20 UNP O35795 EXPRESSION TAG SEQADV 4CD1 ASP A 21 UNP O35795 EXPRESSION TAG SEQADV 4CD1 ASP A 22 UNP O35795 EXPRESSION TAG SEQADV 4CD1 ASP A 23 UNP O35795 EXPRESSION TAG SEQADV 4CD1 LYS A 24 UNP O35795 EXPRESSION TAG SEQADV 4CD1 SER A 25 UNP O35795 EXPRESSION TAG SEQADV 4CD1 PRO A 26 UNP O35795 EXPRESSION TAG SEQADV 4CD1 ASP A 27 UNP O35795 EXPRESSION TAG SEQRES 1 A 457 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR GLY SER SEQRES 2 A 457 ASN ASP ASP ASP ASP LYS SER PRO ASP PRO THR GLN ASP SEQRES 3 A 457 VAL ARG GLU PRO PRO ALA LEU LYS TYR GLY ILE VAL LEU SEQRES 4 A 457 ASP ALA GLY SER SER HIS THR SER MET PHE VAL TYR LYS SEQRES 5 A 457 TRP PRO ALA ASP LYS GLU ASN ASP THR GLY ILE VAL GLY SEQRES 6 A 457 GLN HIS SER SER CYS ASP VAL GLN GLY GLY GLY ILE SER SEQRES 7 A 457 SER TYR ALA ASN ASP PRO SER LYS ALA GLY GLN SER LEU SEQRES 8 A 457 VAL ARG CYS LEU GLU GLN ALA LEU ARG ASP VAL PRO ARG SEQRES 9 A 457 ASP ARG HIS ALA SER THR PRO LEU TYR LEU GLY ALA THR SEQRES 10 A 457 ALA GLY MET ARG LEU LEU ASN LEU THR SER PRO GLU ALA SEQRES 11 A 457 THR ALA ARG VAL LEU GLU ALA VAL THR GLN THR LEU THR SEQRES 12 A 457 GLN TYR PRO PHE ASP PHE ARG GLY ALA ARG ILE LEU SER SEQRES 13 A 457 GLY GLN ASP GLU GLY VAL PHE GLY TRP VAL THR ALA ASN SEQRES 14 A 457 TYR LEU LEU GLU ASN PHE ILE LYS TYR GLY TRP VAL GLY SEQRES 15 A 457 ARG TRP ILE ARG PRO ARG LYS GLY THR LEU GLY ALA MET SEQRES 16 A 457 ASP LEU GLY GLY ALA SER THR GLN ILE THR PHE GLU THR SEQRES 17 A 457 THR SER PRO SER GLU ASP PRO GLY ASN GLU VAL HIS LEU SEQRES 18 A 457 ARG LEU TYR GLY GLN HIS TYR ARG VAL TYR THR HIS SER SEQRES 19 A 457 PHE LEU CYS TYR GLY ARG ASP GLN ILE LEU LEU ARG LEU SEQRES 20 A 457 LEU ALA SER ALA LEU GLN ILE HIS ARG PHE HIS PRO CYS SEQRES 21 A 457 TRP PRO LYS GLY TYR SER THR GLN VAL LEU LEU GLN GLU SEQRES 22 A 457 VAL TYR GLN SER PRO CYS THR MET GLY GLN ARG PRO ARG SEQRES 23 A 457 ALA PHE ASN GLY SER ALA ILE VAL SER LEU SER GLY THR SEQRES 24 A 457 SER ASN ALA THR LEU CYS ARG ASP LEU VAL SER ARG LEU SEQRES 25 A 457 PHE ASN ILE SER SER CYS PRO PHE SER GLN CYS SER PHE SEQRES 26 A 457 ASN GLY VAL PHE GLN PRO PRO VAL ALA GLY ASN PHE ILE SEQRES 27 A 457 ALA PHE SER ALA PHE TYR TYR THR VAL ASP PHE LEU THR SEQRES 28 A 457 THR VAL MET GLY LEU PRO VAL GLY THR LEU LYS GLN LEU SEQRES 29 A 457 GLU GLU ALA THR GLU ILE THR CYS ASN GLN THR TRP THR SEQRES 30 A 457 GLU LEU GLN ALA ARG VAL PRO GLY GLN LYS THR ARG LEU SEQRES 31 A 457 ALA ASP TYR CYS ALA VAL ALA MET PHE ILE HIS GLN LEU SEQRES 32 A 457 LEU SER ARG GLY TYR HIS PHE ASP GLU ARG SER PHE ARG SEQRES 33 A 457 GLU VAL VAL PHE GLN LYS LYS ALA ALA ASP THR ALA VAL SEQRES 34 A 457 GLY TRP ALA LEU GLY TYR MET LEU ASN LEU THR ASN LEU SEQRES 35 A 457 ILE PRO ALA ASP LEU PRO GLY LEU ARG LYS GLY THR HIS SEQRES 36 A 457 PHE SER HET 8E9 A1452 29 HET 8E9 A1453 58 HETNAM 8E9 1-AMINO-4-(3-METHYLPHENYL)AMINO-9,10-DIOXO-9,10- HETNAM 2 8E9 DIHYDROANTHRACENE-2-SULFONATE FORMUL 2 8E9 2(C21 H16 N2 O5 S) FORMUL 4 HOH *127(H2 O) HELIX 1 1 PRO A 59 GLU A 63 5 5 HELIX 2 2 GLY A 81 ALA A 86 5 6 HELIX 3 3 PRO A 89 LEU A 96 1 8 HELIX 4 4 LEU A 96 VAL A 107 1 12 HELIX 5 5 PRO A 108 HIS A 112 5 5 HELIX 6 6 THR A 122 SER A 132 1 11 HELIX 7 7 SER A 132 THR A 148 1 17 HELIX 8 8 SER A 161 LEU A 177 1 17 HELIX 9 9 ASP A 219 GLY A 221 5 3 HELIX 10 10 GLY A 244 HIS A 260 1 17 HELIX 11 11 LEU A 276 SER A 282 1 7 HELIX 12 12 PRO A 283 MET A 286 5 4 HELIX 13 13 ASN A 306 ARG A 316 1 11 HELIX 14 14 ALA A 347 VAL A 358 1 12 HELIX 15 15 THR A 365 GLN A 379 1 15 HELIX 16 16 THR A 380 ARG A 387 1 8 HELIX 17 17 ARG A 394 ALA A 396 5 3 HELIX 18 18 ASP A 397 ARG A 411 1 15 HELIX 19 19 ASP A 416 ARG A 421 1 6 HELIX 20 20 TRP A 436 THR A 445 1 10 SHEET 1 AA 5 GLY A 70 ASP A 76 0 SHEET 2 AA 5 THR A 51 TRP A 58 -1 O MET A 53 N CYS A 75 SHEET 3 AA 5 LYS A 39 ALA A 46 -1 O LYS A 39 N TRP A 58 SHEET 4 AA 5 PRO A 116 ALA A 121 1 O PRO A 116 N ILE A 42 SHEET 5 AA 5 ASP A 153 ILE A 159 1 O ASP A 153 N LEU A 117 SHEET 1 AB 2 GLY A 184 TRP A 185 0 SHEET 2 AB 2 ARG A 188 TRP A 189 -1 O ARG A 188 N TRP A 185 SHEET 1 AC 6 GLU A 223 LEU A 228 0 SHEET 2 AC 6 GLN A 231 LEU A 241 -1 O GLN A 231 N LEU A 228 SHEET 3 AC 6 SER A 206 GLU A 212 -1 O THR A 207 N PHE A 240 SHEET 4 AC 6 GLY A 198 LEU A 202 -1 O ALA A 199 N THR A 210 SHEET 5 AC 6 PHE A 342 SER A 346 1 O ILE A 343 N MET A 200 SHEET 6 AC 6 VAL A 423 PHE A 425 1 O VAL A 424 N ALA A 344 SHEET 1 AD 2 SER A 271 LEU A 275 0 SHEET 2 AD 2 ILE A 298 SER A 302 -1 O VAL A 299 N VAL A 274 SHEET 1 AE 2 LYS A 428 ALA A 429 0 SHEET 2 AE 2 THR A 432 ALA A 433 -1 O THR A 432 N ALA A 429 SSBOND 1 CYS A 75 CYS A 99 1555 1555 2.04 SSBOND 2 CYS A 242 CYS A 284 1555 1555 2.05 SSBOND 3 CYS A 265 CYS A 310 1555 1555 2.10 SSBOND 4 CYS A 323 CYS A 328 1555 1555 2.02 SSBOND 5 CYS A 377 CYS A 399 1555 1555 2.06 CISPEP 1 ARG A 191 PRO A 192 0 -6.97 SITE 1 AC1 8 HIS A 50 ARG A 245 LEU A 249 LYS A 392 SITE 2 AC1 8 THR A 393 ARG A 394 TYR A 398 8E9 A1453 SITE 1 AC2 7 SER A 52 ASP A 76 ARG A 245 SER A 346 SITE 2 AC2 7 TYR A 350 TYR A 398 8E9 A1452 CRYST1 41.007 68.040 162.389 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024386 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006158 0.00000