HEADER HYDROLASE 30-OCT-13 4CD5 TITLE THE STRUCTURE OF GH26 BETA-MANNANASE CJMAN26C FROM CELLVIBRIO TITLE 2 JAPONICUS IN COMPLEX WITH MANMIM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA MANNANASE, PUTATIVE, MAN26C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CJMAN26C BETA-MANNANASE; COMPND 5 EC: 3.2.1.78; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS; SOURCE 3 ORGANISM_TAXID: 498211; SOURCE 4 STRAIN: UEDA107; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET20B KEYWDS HYDROLASE, BETA-MANNOSIDASE, MANNOSIDASE, GLYCOSIDE HYDROLASE, GH26, KEYWDS 2 GH113, CAZY, ENZYME-CARBOHYDRATE INTERACTION, MANNOSE, GLYCOSIDASE KEYWDS 3 INHIBITION, QUANTUM MECHANICS, BIOCATALYSIS, CONFORMATION EXPDTA X-RAY DIFFRACTION AUTHOR R.J.WILLIAMS,J.IGLESIAS-FERNANDEZ,J.STEPPER,A.JACKSON,A.J.THOMPSON, AUTHOR 2 E.C.LOWE,J.M.WHITE,H.J.GILBERT,C.ROVIRA,G.J.DAVIES,S.J.WILLIAMS REVDAT 3 20-DEC-23 4CD5 1 HETSYN REVDAT 2 29-JUL-20 4CD5 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 02-APR-14 4CD5 0 JRNL AUTH R.J.WILLIAMS,J.IGLESIAS-FERNANDEZ,J.STEPPER,A.JACKSON, JRNL AUTH 2 A.J.THOMPSON,E.C.LOWE,J.M.WHITE,H.J.GILBERT,C.ROVIRA, JRNL AUTH 3 G.J.DAVIES,S.J.WILLIAMS JRNL TITL COMBINED INHIBITOR FREE-ENERGY LANDSCAPE AND STRUCTURAL JRNL TITL 2 ANALYSIS REPORTS ON THE MANNOSIDASE CONFORMATIONAL JRNL TITL 3 COORDINATE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 1087 2014 JRNL REFN ISSN 1433-7851 JRNL PMID 24339341 JRNL DOI 10.1002/ANIE.201308334 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 197844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 10555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 14427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.4050 REMARK 3 BIN FREE R VALUE SET COUNT : 789 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 1.17000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.026 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.207 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3193 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2906 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4379 ; 1.549 ; 1.932 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6684 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 5.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;33.231 ;23.550 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 492 ;11.447 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3727 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 820 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1201 ; 0.259 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2713 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1532 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1347 ; 0.080 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.127 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.107 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 75 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.082 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1512 ; 1.917 ; 1.098 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1511 ; 1.918 ; 1.097 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1900 ; 2.217 ; 1.659 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1681 ; 2.657 ; 1.302 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2459 ; 3.207 ; 1.871 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6099 ;19.642 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 140 ;37.761 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6358 ;12.176 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4CD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 IMPLEMENTATION OF XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208589 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.30 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2VX7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM CITRATE PH 5.6, 15% PEG REMARK 280 3000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.64700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 163.29400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.47050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 204.11750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.82350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.64700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 163.29400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 204.11750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 122.47050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.82350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2147 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 MET A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 CYS A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 GLU A 30 REMARK 465 SER A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 VAL A 35 REMARK 465 ALA A 36 REMARK 465 ASP A 37 REMARK 465 SER A 38 REMARK 465 ALA A 39 REMARK 465 THR A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 ALA A 43 REMARK 465 PRO A 44 REMARK 465 GLN A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 LYS A 48 REMARK 465 PRO A 49 REMARK 465 GLU A 50 REMARK 465 THR A 51 REMARK 465 ALA A 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 382 CG CD CE NZ REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 ARG A 419 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 175 O HOH A 2259 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 99 75.60 -151.57 REMARK 500 ALA A 172 -25.85 -142.22 REMARK 500 ASN A 274 57.53 -142.92 REMARK 500 LYS A 382 -13.45 11.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2141 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2146 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A2147 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2151 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A2231 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2262 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1420 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 76 O REMARK 620 2 HIS A 79 O 92.4 REMARK 620 3 SER A 365 O 90.5 155.7 REMARK 620 4 ILE A 367 O 108.0 105.7 96.3 REMARK 620 5 HOH A2057 O 120.4 86.3 71.5 129.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1421 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 403 O REMARK 620 2 SER A 405 O 104.0 REMARK 620 3 VAL A 408 O 109.4 94.4 REMARK 620 4 HOH A2479 O 72.9 153.8 111.3 REMARK 620 5 HOH A2484 O 141.3 86.4 106.8 81.6 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 9-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 10-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CD4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH26 BETA-MANNANASE CJMAN26C FROM CELLVIBRIO REMARK 900 JAPONICUS IN COMPLEX WITH MANIFG REMARK 900 RELATED ID: 4CD6 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH113 BETA-MANNANASE AAMANA FROM ALICYCLOBACILLUS REMARK 900 ACIDOCALDARIUS IN COMPLEX WITH MANIFG REMARK 900 RELATED ID: 4CD7 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH113 BETA-MANNANASE AAMANA FROM ALICYCLOBACILLUS REMARK 900 ACIDOCALDARIUS IN COMPLEX WITH MANIFG AND BETA-1,4-MANNOBIOSE REMARK 900 RELATED ID: 4CD8 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH113 BETA-MANNANASE AAMANA FROM ALICYCLOBACILLUS REMARK 900 ACIDOCALDARIUS IN COMPLEX WITH MANMIM DBREF 4CD5 A 1 419 UNP B3PGI1 B3PGI1_CELJU 1 419 SEQRES 1 A 419 MET SER THR SER SER ILE SER LEU SER LEU MET ALA ALA SEQRES 2 A 419 LEU MET LEU SER ALA GLY LEU LEU LEU GLY CYS SER GLU SEQRES 3 A 419 LYS PRO ALA GLU SER ALA ALA ALA VAL ALA ASP SER ALA SEQRES 4 A 419 THR THR THR ALA PRO GLN SER GLY LYS PRO GLU THR ALA SEQRES 5 A 419 LEU PRO ALA LEU ILE ASP THR GLN ALA THR ALA GLU THR SEQRES 6 A 419 ARG ALA LEU TYR ARG ASN LEU ALA LYS LEU ARG TYR LYS SEQRES 7 A 419 HIS LEU LEU PHE GLY HIS GLU ASP SER LEU ALA TYR GLY SEQRES 8 A 419 VAL HIS TRP GLU GLY ASP MET ASP ARG SER ASP VAL ARG SEQRES 9 A 419 ASP VAL THR GLY ALA ASN PRO ALA VAL TYR GLY TRP GLU SEQRES 10 A 419 LEU GLY GLY LEU GLU LEU GLY HIS THR ALA ASN LEU ASP SEQRES 11 A 419 ALA VAL ASN PHE GLU LYS MET GLN HIS TRP ILE LYS ALA SEQRES 12 A 419 GLY TYR SER ARG GLY GLY VAL ILE THR ILE SER TRP HIS SEQRES 13 A 419 VAL PHE ASN PRO VAL SER GLY GLY ASN SER TRP ASP LYS SEQRES 14 A 419 THR PRO ALA VAL HIS GLU LEU ILE PRO GLY GLY ALA ARG SEQRES 15 A 419 HIS ALA THR LEU LYS ALA TYR LEU ASP THR PHE VAL ALA SEQRES 16 A 419 PHE ASN GLU GLY LEU ALA ASP VAL ASP ALA GLN GLY ASN SEQRES 17 A 419 LYS HIS TYR PRO PRO ILE ILE PHE ARG PRO TRP HIS GLU SEQRES 18 A 419 HIS ASN GLY ASP TRP PHE TRP TRP GLY LYS GLY HIS ALA SEQRES 19 A 419 SER GLU GLN ASP TYR ILE ALA LEU TRP ARG PHE THR VAL SEQRES 20 A 419 HIS TYR LEU ARG ASP GLU LYS LYS LEU ARG ASN LEU ILE SEQRES 21 A 419 TYR ALA TYR SER PRO ASP ARG SER ARG ILE ASP MET ALA SEQRES 22 A 419 ASN PHE GLU ALA GLY TYR LEU TYR GLY TYR PRO GLY ASP SEQRES 23 A 419 ALA TYR VAL ASP ILE ILE GLY LEU ASP ASN TYR TRP ASP SEQRES 24 A 419 VAL GLY HIS GLU ALA ASN THR ALA SER ALA ASP GLU GLN SEQRES 25 A 419 LYS ALA ALA LEU THR ALA SER LEU LYS GLN LEU VAL GLN SEQRES 26 A 419 ILE ALA ARG SER LYS GLY LYS ILE ALA ALA LEU THR GLU SEQRES 27 A 419 THR GLY ASN ASN ARG LEU THR ILE ASP ASN PHE TRP THR SEQRES 28 A 419 GLU ARG LEU LEU GLY PRO ILE SER ALA ASP ALA ASP ALA SEQRES 29 A 419 SER GLU ILE ALA TYR VAL MET VAL TRP ARG ASN ALA ASN SEQRES 30 A 419 LEU ALA ARG GLU LYS SER GLU GLN PHE PHE ALA PRO PHE SEQRES 31 A 419 PRO GLY GLN ALA THR ALA ASP ASP PHE LYS ARG PHE TYR SEQRES 32 A 419 GLN SER GLU VAL VAL LEU PHE GLU ASP GLU LEU PRO PRO SEQRES 33 A 419 LEU TYR ARG HET NA A1420 1 HET NA A1421 1 HET BMA A1422 11 HET MVL A1423 14 HETNAM NA SODIUM ION HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MVL (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8- HETNAM 2 MVL TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MVL MANNOIMIDAZOLE FORMUL 2 NA 2(NA 1+) FORMUL 4 BMA C6 H12 O6 FORMUL 5 MVL C8 H12 N2 O4 FORMUL 6 HOH *494(H2 O) HELIX 1 1 THR A 62 ARG A 76 1 15 HELIX 2 2 SER A 101 GLY A 108 1 8 HELIX 3 3 GLY A 120 GLY A 124 5 5 HELIX 4 4 ASN A 133 ARG A 147 1 15 HELIX 5 5 ALA A 172 ILE A 177 1 6 HELIX 6 6 ARG A 182 GLY A 199 1 18 HELIX 7 7 SER A 235 ASP A 252 1 18 HELIX 8 8 ARG A 267 ILE A 270 5 4 HELIX 9 9 ASP A 271 ALA A 273 5 3 HELIX 10 10 ASN A 274 LEU A 280 1 7 HELIX 11 11 GLY A 285 VAL A 289 5 5 HELIX 12 12 TYR A 297 GLY A 301 5 5 HELIX 13 13 SER A 308 GLY A 331 1 24 HELIX 14 14 ASN A 348 LEU A 354 1 7 HELIX 15 15 LEU A 354 ALA A 360 1 7 HELIX 16 16 ASP A 363 ILE A 367 5 5 HELIX 17 17 ASN A 377 LYS A 382 1 6 HELIX 18 18 THR A 395 SER A 405 1 11 HELIX 19 19 PHE A 410 LEU A 414 5 5 SHEET 1 AA10 LEU A 80 GLU A 85 0 SHEET 2 AA10 VAL A 408 LEU A 409 1 O LEU A 409 N PHE A 82 SHEET 3 AA10 VAL A 113 GLU A 117 0 SHEET 4 AA10 VAL A 150 SER A 154 0 SHEET 5 AA10 ILE A 214 ARG A 217 0 SHEET 6 AA10 LEU A 259 TYR A 263 0 SHEET 7 AA10 ILE A 291 ASP A 295 0 SHEET 8 AA10 ILE A 333 THR A 339 0 SHEET 9 AA10 TYR A 369 VAL A 372 0 SHEET 10 AA10 LEU A 80 GLU A 85 1 O LEU A 80 N LEU A 409 SHEET 1 AB 2 TYR A 90 GLY A 91 0 SHEET 2 AB 2 TRP A 94 GLU A 95 -1 O TRP A 94 N GLY A 91 SHEET 1 AC 2 ASP A 202 VAL A 203 0 SHEET 2 AC 2 LYS A 209 HIS A 210 -1 O HIS A 210 N ASP A 202 LINK C1 BMA A1422 O4 MVL A1423 1555 1555 1.35 LINK O ARG A 76 NA NA A1420 1555 1555 2.31 LINK O HIS A 79 NA NA A1420 1555 1555 2.32 LINK O SER A 365 NA NA A1420 1555 1555 2.26 LINK O ILE A 367 NA NA A1420 1555 1555 2.33 LINK O TYR A 403 NA NA A1421 1555 1555 2.35 LINK O SER A 405 NA NA A1421 1555 1555 2.27 LINK O VAL A 408 NA NA A1421 1555 1555 2.23 LINK NA NA A1420 O HOH A2057 1555 1555 2.50 LINK NA NA A1421 O HOH A2479 1555 1555 2.37 LINK NA NA A1421 O HOH A2484 1555 1555 2.40 CRYST1 84.507 84.507 244.941 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011833 0.006832 0.000000 0.00000 SCALE2 0.000000 0.013664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004083 0.00000