HEADER HYDROLASE 30-OCT-13 4CD7 TITLE THE STRUCTURE OF GH113 BETA-MANNANASE AAMANA FROM ALICYCLOBACILLUS TITLE 2 ACIDOCALDARIUS IN COMPLEX WITH MANIFG AND BETA-1,4-MANNOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-1,4-MANNANASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AAMANA BETA-MANNANASE; COMPND 5 EC: 3.2.1.78; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALICYCLOBACILLUS ACIDOCALDARIUS; SOURCE 3 ORGANISM_TAXID: 405212; SOURCE 4 STRAIN: TC-12-31; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, BETA-MANNOSIDASE, MANNOSIDASE, GLYCOSIDE HYDROLASE, GH26, KEYWDS 2 GH113, CAZY, ENZYME-CARBOHYDRATE INTERACTION, GLYCOSIDASE KEYWDS 3 INHIBITION, QUANTUM MECHANICS, BIOCATALYSIS, CONFORMATION EXPDTA X-RAY DIFFRACTION AUTHOR R.J.WILLIAMS,J.IGLESIAS-FERNANDEZ,J.STEPPER,A.JACKSON,A.J.THOMPSON, AUTHOR 2 E.C.LOWE,J.M.WHITE,H.J.GILBERT,C.ROVIRA,G.J.DAVIES,S.J.WILLIAMS REVDAT 4 20-DEC-23 4CD7 1 HETSYN REVDAT 3 29-JUL-20 4CD7 1 COMPND REMARK HETNAM HETSYN REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 15-JUL-15 4CD7 1 HETSYN REVDAT 1 02-APR-14 4CD7 0 JRNL AUTH R.J.WILLIAMS,J.IGLESIAS-FERNANDEZ,J.STEPPER,A.JACKSON, JRNL AUTH 2 A.J.THOMPSON,E.C.LOWE,J.M.WHITE,H.J.GILBERT,C.ROVIRA, JRNL AUTH 3 G.J.DAVIES,S.J.WILLIAMS JRNL TITL COMBINED INHIBITOR FREE-ENERGY LANDSCAPE AND STRUCTURAL JRNL TITL 2 ANALYSIS REPORTS ON THE MANNOSIDASE CONFORMATIONAL JRNL TITL 3 COORDINATE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 1087 2014 JRNL REFN ISSN 1433-7851 JRNL PMID 24339341 JRNL DOI 10.1002/ANIE.201308334 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0033 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 83793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4466 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4986 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : 0.60000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5298 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4647 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7226 ; 1.405 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10731 ; 1.030 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 647 ; 6.118 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;28.686 ;22.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 768 ;12.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.523 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 737 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6008 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1298 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1539 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4257 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2534 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2652 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.089 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 89 ; 0.344 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 64 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.073 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2532 ; 1.975 ; 1.358 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2533 ; 1.975 ; 1.358 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3167 ; 2.357 ; 2.043 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2766 ; 2.773 ; 1.625 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4048 ; 3.341 ; 2.347 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9945 ; 2.466 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 137 ;30.610 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 10105 ; 8.839 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4CD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 IMPLEMENTATION OF XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88667 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 76.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3CIV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 4% PEG REMARK 280 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.73600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.10600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.29300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.10600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.73600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.29300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 5 REMARK 465 ARG A 320 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 ILE B 4 REMARK 465 ASN B 319 REMARK 465 ARG B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 8 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 ARG B 140 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 210 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 ILE B 317 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 60 O HOH A 2060 2.15 REMARK 500 O HOH A 2122 O HOH A 2232 2.16 REMARK 500 O4 IFM B 500 O5 BMA B 501 2.17 REMARK 500 O4 IFM A 500 O5 BMA A 501 2.18 REMARK 500 OE1 GLU B 110 O HOH A 2150 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2232 O HOH B 2215 4545 0.67 REMARK 500 O HOH A 2133 O HOH B 2085 3545 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 217 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 217 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 243 62.15 -151.61 REMARK 500 ILE B 317 40.98 -75.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2072 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B2073 DISTANCE = 5.86 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CD4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH26 BETA-MANNANASE CJMAN26C FROM CELLVIBRIO REMARK 900 JAPONICUS IN COMPLEX WITH MANIFG REMARK 900 RELATED ID: 4CD5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH26 BETA-MANNANASE CJMAN26C FROM CELLVIBRIO REMARK 900 JAPONICUS IN COMPLEX WITH MANMIM REMARK 900 RELATED ID: 4CD6 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH113 BETA-MANNANASE AAMANA FROM ALICYCLOBACILLUS REMARK 900 ACIDOCALDARIUS IN COMPLEX WITH MANIFG REMARK 900 RELATED ID: 4CD8 RELATED DB: PDB REMARK 900 THE STRUCTURE OF GH113 BETA-MANNANASE AAMANA FROM ALICYCLOBACILLUS REMARK 900 ACIDOCALDARIUS IN COMPLEX WITH MANMIM DBREF 4CD7 A 1 320 UNP A5H1I6 A5H1I6_9BACL 1 320 DBREF 4CD7 B 1 320 UNP A5H1I6 A5H1I6_9BACL 1 320 SEQRES 1 A 320 MET GLY ARG ILE GLU SER ALA PHE ASP LEU GLY PHE ILE SEQRES 2 A 320 ARG GLY MET THR PHE GLY PHE VAL GLY GLN HIS GLY THR SEQRES 3 A 320 TRP GLY THR ASP GLU ALA ARG ALA SER MET ARG ALA LEU SEQRES 4 A 320 ALA GLU GLN PRO PHE ASN TRP VAL THR LEU ALA PHE ALA SEQRES 5 A 320 GLY LEU MET GLU HIS PRO GLY ASP PRO ALA ILE ALA TYR SEQRES 6 A 320 GLY PRO PRO VAL THR VAL SER ASP ASP GLU ILE ALA SER SEQRES 7 A 320 MET ALA GLU LEU ALA HIS ALA LEU GLY LEU LYS VAL CYS SEQRES 8 A 320 LEU LYS PRO THR VAL ASN CYS ARG ASP GLY THR TRP ARG SEQRES 9 A 320 GLY GLU ILE ARG PHE GLU LYS GLU HIS GLY PRO ASP LEU SEQRES 10 A 320 GLU SER TRP GLU ALA TRP PHE GLY SER TYR SER ASP MET SEQRES 11 A 320 MET ALA HIS TYR ALA HIS VAL ALA LYS ARG THR GLY CYS SEQRES 12 A 320 GLU MET PHE CYS VAL GLY CYS GLU MET THR THR ALA GLU SEQRES 13 A 320 PRO HIS GLU ALA MET TRP ARG GLU THR ILE ALA ARG VAL SEQRES 14 A 320 ARG THR GLU TYR ASP GLY LEU VAL THR TYR ASN CYS ASN SEQRES 15 A 320 HIS GLY ARG GLU GLU HIS VAL ARG PHE TRP ASP ALA VAL SEQRES 16 A 320 ASP LEU ILE SER SER SER ALA TYR TYR PRO ILE ASP ARG SEQRES 17 A 320 TRP ARG ASP ARG VAL PRO VAL LEU ARG GLU VAL ALA GLU SEQRES 18 A 320 ALA HIS GLU LYS PRO LEU PHE PHE MET GLU VAL GLY CYS SEQRES 19 A 320 PRO SER ARG SER GLY SER GLY ALA CYS PRO TRP ASP TYR SEQRES 20 A 320 ARG HIS PRO GLY ALA VAL CYS LEU ASP GLU GLN ALA ARG SEQRES 21 A 320 PHE TYR GLU ALA MET PHE ALA ALA MET PRO ASP GLU PRO SEQRES 22 A 320 TRP PHE LYS GLY TYR MET LEU TRP GLU TRP PRO TRP LYS SEQRES 23 A 320 LEU TYR PRO ARG GLU ALA ALA SER GLU ASP GLY SER TYR SEQRES 24 A 320 CYS ILE TYR GLY LYS PRO ALA GLU ASP VAL VAL ALA ARG SEQRES 25 A 320 ALA PHE SER ALA ILE ALA ASN ARG SEQRES 1 B 320 MET GLY ARG ILE GLU SER ALA PHE ASP LEU GLY PHE ILE SEQRES 2 B 320 ARG GLY MET THR PHE GLY PHE VAL GLY GLN HIS GLY THR SEQRES 3 B 320 TRP GLY THR ASP GLU ALA ARG ALA SER MET ARG ALA LEU SEQRES 4 B 320 ALA GLU GLN PRO PHE ASN TRP VAL THR LEU ALA PHE ALA SEQRES 5 B 320 GLY LEU MET GLU HIS PRO GLY ASP PRO ALA ILE ALA TYR SEQRES 6 B 320 GLY PRO PRO VAL THR VAL SER ASP ASP GLU ILE ALA SER SEQRES 7 B 320 MET ALA GLU LEU ALA HIS ALA LEU GLY LEU LYS VAL CYS SEQRES 8 B 320 LEU LYS PRO THR VAL ASN CYS ARG ASP GLY THR TRP ARG SEQRES 9 B 320 GLY GLU ILE ARG PHE GLU LYS GLU HIS GLY PRO ASP LEU SEQRES 10 B 320 GLU SER TRP GLU ALA TRP PHE GLY SER TYR SER ASP MET SEQRES 11 B 320 MET ALA HIS TYR ALA HIS VAL ALA LYS ARG THR GLY CYS SEQRES 12 B 320 GLU MET PHE CYS VAL GLY CYS GLU MET THR THR ALA GLU SEQRES 13 B 320 PRO HIS GLU ALA MET TRP ARG GLU THR ILE ALA ARG VAL SEQRES 14 B 320 ARG THR GLU TYR ASP GLY LEU VAL THR TYR ASN CYS ASN SEQRES 15 B 320 HIS GLY ARG GLU GLU HIS VAL ARG PHE TRP ASP ALA VAL SEQRES 16 B 320 ASP LEU ILE SER SER SER ALA TYR TYR PRO ILE ASP ARG SEQRES 17 B 320 TRP ARG ASP ARG VAL PRO VAL LEU ARG GLU VAL ALA GLU SEQRES 18 B 320 ALA HIS GLU LYS PRO LEU PHE PHE MET GLU VAL GLY CYS SEQRES 19 B 320 PRO SER ARG SER GLY SER GLY ALA CYS PRO TRP ASP TYR SEQRES 20 B 320 ARG HIS PRO GLY ALA VAL CYS LEU ASP GLU GLN ALA ARG SEQRES 21 B 320 PHE TYR GLU ALA MET PHE ALA ALA MET PRO ASP GLU PRO SEQRES 22 B 320 TRP PHE LYS GLY TYR MET LEU TRP GLU TRP PRO TRP LYS SEQRES 23 B 320 LEU TYR PRO ARG GLU ALA ALA SER GLU ASP GLY SER TYR SEQRES 24 B 320 CYS ILE TYR GLY LYS PRO ALA GLU ASP VAL VAL ALA ARG SEQRES 25 B 320 ALA PHE SER ALA ILE ALA ASN ARG HET MAN C 1 12 HET BMA C 2 11 HET MAN D 1 12 HET BMA D 2 11 HET IFM A 500 10 HET BMA A 501 11 HET IFM B 500 10 HET BMA B 501 11 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM IFM 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN IFM AFEGOSTAT; ISOFAGOMINE; (3R,4R,5R)-5-(HYDROXYMETHYL) HETSYN 2 IFM PIPERIDINE-3,4-DIOL FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 BMA 4(C6 H12 O6) FORMUL 5 IFM 2(C6 H13 N O3) FORMUL 9 HOH *470(H2 O) HELIX 1 1 THR A 29 GLU A 41 1 13 HELIX 2 2 SER A 72 LEU A 86 1 15 HELIX 3 3 TRP A 103 ILE A 107 5 5 HELIX 4 4 SER A 119 THR A 141 1 23 HELIX 5 5 HIS A 158 TYR A 173 1 16 HELIX 6 6 PHE A 191 VAL A 195 5 5 HELIX 7 7 PRO A 205 ASP A 207 5 3 HELIX 8 8 ARG A 208 GLU A 224 1 17 HELIX 9 9 GLY A 239 CYS A 243 5 5 HELIX 10 10 CYS A 254 MET A 269 1 16 HELIX 11 11 PRO A 289 ASP A 296 5 8 HELIX 12 12 LYS A 304 ASN A 319 1 16 HELIX 13 13 THR B 29 GLN B 42 1 14 HELIX 14 14 SER B 72 LEU B 86 1 15 HELIX 15 15 TRP B 103 ILE B 107 5 5 HELIX 16 16 SER B 119 THR B 141 1 23 HELIX 17 17 HIS B 158 TYR B 173 1 16 HELIX 18 18 PHE B 191 VAL B 195 5 5 HELIX 19 19 PRO B 205 ASP B 207 5 3 HELIX 20 20 ARG B 208 GLU B 224 1 17 HELIX 21 21 GLY B 239 CYS B 243 5 5 HELIX 22 22 CYS B 254 MET B 269 1 16 HELIX 23 23 PRO B 289 ASP B 296 5 8 HELIX 24 24 LYS B 304 ILE B 317 1 14 SHEET 1 AA 9 ILE A 13 PHE A 18 0 SHEET 2 AA 9 PHE A 275 TRP A 283 1 O LYS A 276 N ILE A 13 SHEET 3 AA 9 LEU A 227 VAL A 232 1 O LEU A 227 N LYS A 276 SHEET 4 AA 9 LEU A 197 SER A 201 1 O ILE A 198 N PHE A 228 SHEET 5 AA 9 LEU A 176 ASN A 182 1 O TYR A 179 N SER A 199 SHEET 6 AA 9 MET A 145 CYS A 150 1 O PHE A 146 N THR A 178 SHEET 7 AA 9 LYS A 89 CYS A 98 1 O VAL A 90 N MET A 145 SHEET 8 AA 9 TRP A 46 MET A 55 1 O VAL A 47 N CYS A 91 SHEET 9 AA 9 ILE A 13 PHE A 18 1 O MET A 16 N THR A 48 SHEET 1 BA 9 ILE B 13 PHE B 18 0 SHEET 2 BA 9 PHE B 275 TRP B 283 1 O LYS B 276 N ILE B 13 SHEET 3 BA 9 LEU B 227 VAL B 232 1 O LEU B 227 N LYS B 276 SHEET 4 BA 9 LEU B 197 SER B 201 1 O ILE B 198 N PHE B 228 SHEET 5 BA 9 LEU B 176 ASN B 182 1 O TYR B 179 N SER B 199 SHEET 6 BA 9 MET B 145 CYS B 150 1 O PHE B 146 N THR B 178 SHEET 7 BA 9 LYS B 89 CYS B 98 1 O VAL B 90 N MET B 145 SHEET 8 BA 9 TRP B 46 MET B 55 1 O VAL B 47 N CYS B 91 SHEET 9 BA 9 ILE B 13 PHE B 18 1 O MET B 16 N THR B 48 LINK O4 IFM A 500 C1 BMA A 501 1555 1555 1.41 LINK O4 IFM B 500 C1 BMA B 501 1555 1555 1.41 LINK O4 MAN C 1 C1 BMA C 2 1555 1555 1.43 LINK O4 MAN D 1 C1 BMA D 2 1555 1555 1.42 CISPEP 1 PHE A 20 VAL A 21 0 11.12 CISPEP 2 PRO A 67 PRO A 68 0 6.58 CISPEP 3 TRP A 281 GLU A 282 0 -1.01 CISPEP 4 PHE B 20 VAL B 21 0 7.96 CISPEP 5 PRO B 67 PRO B 68 0 6.20 CISPEP 6 TRP B 281 GLU B 282 0 0.70 CRYST1 69.472 76.586 140.212 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007132 0.00000