HEADER CELL ADHESION 30-OCT-13 4CD9 OBSLTE 26-NOV-14 4CD9 TITLE STRUCTURE OF SASG A-DOMAIN (RESIDUES 163-419) FROM STAPHYLOCOCCUS TITLE 2 AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE PROTEIN G; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: A DOMAIN, RESIDUES 163-421; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PETFPP_1 KEYWDS CELL ADHESION, L-TYPE LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR K.E.ATKIN,A.S.BRENTNALL,E.J.DODSON,J.P.TURKENBURG,J.R.POTTS REVDAT 2 26-NOV-14 4CD9 1 OBSLTE REVDAT 1 12-NOV-14 4CD9 0 JRNL AUTH K.E.ATKIN,A.S.BRENTNALL,E.J.DODSON,J.P.TURKENBURG,J.R.POTTS JRNL TITL SASG A-DOMAIN (RESIDUES 163-419) FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.09 REMARK 3 NUMBER OF REFLECTIONS : 120270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18759 REMARK 3 R VALUE (WORKING SET) : 0.18464 REMARK 3 FREE R VALUE : 0.24269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 6460 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.650 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.693 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.221 REMARK 3 BIN FREE R VALUE SET COUNT : 472 REMARK 3 BIN FREE R VALUE : 0.336 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.692 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41 REMARK 3 B22 (A**2) : -0.41 REMARK 3 B33 (A**2) : 0.82 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.020 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.641 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8061 ; 0.031 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 7353 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10818 ; 3.057 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16911 ; 1.322 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1016 ;10.109 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 400 ;37.344 ;25.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1356 ;17.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.842 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1138 ; 0.194 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9476 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1976 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4086 ; 2.148 ; 1.613 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4085 ; 2.142 ; 1.613 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5092 ; 2.899 ; 2.415 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3975 ; 2.184 ; 1.721 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.506 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4CD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THIS ENTRY HAS BEEN OBSOLETED ON AUTHOR REQUEST. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-13. REMARK 100 THE PDBE ID CODE IS EBI-58840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M-F) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.65 REMARK 200 RESOLUTION RANGE LOW (A) : 57.36 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.4 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.7 REMARK 200 R MERGE FOR SHELL (I) : 0.61 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4CCI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M NA MALONATE REMARK 280 PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.68000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.34000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 205.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 420 REMARK 465 LYS A 421 REMARK 465 SER B 163 REMARK 465 LYS B 319 REMARK 465 PRO B 420 REMARK 465 LYS B 421 REMARK 465 SER C 163 REMARK 465 PRO C 420 REMARK 465 LYS C 421 REMARK 465 SER D 163 REMARK 465 SER D 320 REMARK 465 LYS D 321 REMARK 465 PRO D 420 REMARK 465 LYS D 421 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 275 O HOH B 2030 1.92 REMARK 500 O LYS B 286 N LYS B 289 2.16 REMARK 500 O SER D 203 C ASN D 395 2.11 REMARK 500 O HOH A 2036 O HOH A 2048 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 2034 O B HOH C 2047 3555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 252 CD GLU A 252 OE1 0.067 REMARK 500 TYR A 362 CE1 TYR A 362 CZ 0.080 REMARK 500 SER B 269 CB SER B 269 OG 0.093 REMARK 500 LYS B 303 C LYS B 303 O -0.137 REMARK 500 GLU C 253 CD GLU C 253 OE1 0.087 REMARK 500 ASP C 373 CB ASP C 373 CG 0.138 REMARK 500 SER D 219 CB SER D 219 OG 0.088 REMARK 500 TRP D 242 CE3 TRP D 242 CZ3 -0.128 REMARK 500 TYR D 362 CB TYR D 362 CG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 210 CB - CG - CD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 LEU A 212 CB - CG - CD2 ANGL. DEV. = 11.6 DEGREES REMARK 500 ASP A 221 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 305 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 329 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 336 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 373 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 VAL B 180 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP B 181 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 217 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 GLU B 253 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG B 343 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 343 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 LEU B 344 CB - CG - CD1 ANGL. DEV. = -14.0 DEGREES REMARK 500 ASN B 395 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP B 407 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 LYS C 171 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 LEU C 206 CB - CG - CD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP C 221 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP C 221 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 GLU C 253 OE1 - CD - OE2 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP C 285 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP C 285 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP C 305 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 318 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG C 343 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 PRO D 165 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP D 181 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 LYS D 213 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP D 217 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 LEU D 245 CB - CG - CD1 ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP D 285 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP D 285 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP D 305 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 LEU D 344 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU D 385 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG D 391 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG D 405 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 181 -159.57 -150.42 REMARK 500 LYS A 185 75.83 35.20 REMARK 500 ASN A 198 54.19 87.66 REMARK 500 LEU A 266 107.69 -33.29 REMARK 500 TYR A 295 65.83 -1.13 REMARK 500 LYS A 319 -2.70 -47.93 REMARK 500 SER A 331 126.99 -36.10 REMARK 500 ASN A 333 69.45 -116.13 REMARK 500 SER A 389 141.34 -173.37 REMARK 500 HIS B 173 13.57 -68.59 REMARK 500 ASP B 181 -156.46 -152.74 REMARK 500 LYS B 185 62.61 35.73 REMARK 500 ASN B 198 55.14 80.83 REMARK 500 ASN B 204 32.82 -94.48 REMARK 500 ASN B 250 -167.00 -102.67 REMARK 500 THR B 287 -39.64 -38.09 REMARK 500 TYR B 295 59.42 -141.65 REMARK 500 ASN B 333 67.03 -104.26 REMARK 500 ASP B 336 12.38 -69.98 REMARK 500 GLU C 172 -16.66 -47.13 REMARK 500 ASN C 198 66.07 74.69 REMARK 500 ASP C 217 108.55 -52.68 REMARK 500 TYR C 295 63.56 66.56 REMARK 500 LYS C 321 -21.08 77.12 REMARK 500 ASN C 333 59.85 -165.17 REMARK 500 ASN C 395 78.23 40.98 REMARK 500 ASN C 399 31.50 -146.47 REMARK 500 LYS D 185 65.82 26.59 REMARK 500 GLU D 193 148.84 177.54 REMARK 500 LEU D 266 120.93 -39.33 REMARK 500 TYR D 295 63.99 -108.14 REMARK 500 ALA D 300 142.34 -179.72 REMARK 500 ASP D 318 -110.61 -96.73 REMARK 500 SER D 331 120.57 -30.45 REMARK 500 SER D 389 -163.48 -164.07 REMARK 500 ARG D 391 29.66 43.74 REMARK 500 GLU D 418 126.21 -32.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 194 THR B 195 145.06 REMARK 500 GLY B 238 ALA B 239 -147.78 REMARK 500 SER B 247 LYS B 248 148.98 REMARK 500 SER B 320 LYS B 321 -147.16 REMARK 500 ASP D 318 LYS D 319 -139.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 405 -10.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 235 21.9 L L OUTSIDE RANGE REMARK 500 ILE A 260 23.0 L L OUTSIDE RANGE REMARK 500 LYS A 378 24.1 L L OUTSIDE RANGE REMARK 500 ARG A 391 24.8 L L OUTSIDE RANGE REMARK 500 ASN B 235 24.5 L L OUTSIDE RANGE REMARK 500 ILE B 317 20.7 L L OUTSIDE RANGE REMARK 500 ASN B 395 13.3 L L OUTSIDE RANGE REMARK 500 GLN C 290 23.5 L L OUTSIDE RANGE REMARK 500 PHE D 222 22.3 L L OUTSIDE RANGE REMARK 500 THR D 236 24.6 L L OUTSIDE RANGE REMARK 500 LYS D 378 21.4 L L OUTSIDE RANGE REMARK 500 ASN D 395 20.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2036 O REMARK 620 2 GLY A 277 O 91.7 REMARK 620 3 ASP A 275 OD1 72.9 76.2 REMARK 620 4 ASP A 275 OD2 85.3 130.9 56.1 REMARK 620 5 ASP A 285 OD1 139.8 126.7 122.6 77.8 REMARK 620 6 HOH A2048 O 56.6 120.6 125.6 98.1 89.9 REMARK 620 7 ASP A 285 OD2 133.3 84.7 148.4 130.4 52.8 85.8 REMARK 620 8 GLN A 290 OE1 139.4 59.4 72.7 93.1 78.3 161.7 76.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 277 O REMARK 620 2 ASP B 285 OD1 143.3 REMARK 620 3 ASP B 285 OD2 91.6 56.1 REMARK 620 4 HOH B2030 O 78.5 138.2 148.3 REMARK 620 5 HOH B2039 O 98.7 90.7 76.5 75.5 REMARK 620 6 ASP B 275 OD1 82.9 120.0 158.3 50.8 125.0 REMARK 620 7 ASP B 275 OD2 135.1 76.8 132.4 67.5 100.1 53.0 REMARK 620 8 GLN B 290 OE1 86.3 68.0 71.0 136.9 147.3 87.7 98.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C2041 O REMARK 620 2 ASP C 285 OD1 140.1 REMARK 620 3 ASP C 285 OD2 128.0 53.8 REMARK 620 4 HOH C2054 O 76.3 68.8 68.1 REMARK 620 5 ASP C 275 OD1 74.5 114.1 156.9 129.6 REMARK 620 6 ASP C 275 OD2 77.9 76.3 126.4 77.3 57.0 REMARK 620 7 GLY C 277 O 75.0 140.0 91.5 120.4 90.0 141.9 REMARK 620 8 GLN C 290 OE1 144.6 74.4 74.1 137.9 83.7 113.1 77.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 285 OD1 REMARK 620 2 ASP D 275 OD1 128.5 REMARK 620 3 GLY D 277 O 138.8 80.4 REMARK 620 4 ASP D 285 OD2 59.4 147.3 80.6 REMARK 620 5 GLN D 290 OE1 78.3 74.8 84.0 76.9 REMARK 620 6 HOH D2030 O 141.3 78.0 63.1 115.9 140.2 REMARK 620 7 ASP D 275 OD2 90.2 57.6 130.6 148.6 106.2 82.3 REMARK 620 8 HOH D2042 O 78.7 129.0 106.9 82.1 154.5 62.9 84.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1420 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C1421 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1420 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CCI RELATED DB: PDB REMARK 900 STRUCTURE OF AAP A-DOMAIN (RESIDUES 351-605) FROM REMARK 900 STAPHYLOCOCCUS EPIDERMIDIS DBREF 4CD9 A 163 421 UNP Q2G2B2 SASG_STAA8 163 421 DBREF 4CD9 B 163 421 UNP Q2G2B2 SASG_STAA8 163 421 DBREF 4CD9 C 163 421 UNP Q2G2B2 SASG_STAA8 163 421 DBREF 4CD9 D 163 421 UNP Q2G2B2 SASG_STAA8 163 421 SEQRES 1 A 259 SER THR PRO ILE THR ILE GLN GLY LYS GLU HIS PHE GLU SEQRES 2 A 259 GLY TYR GLY SER VAL ASP ILE GLN LYS LYS PRO THR ASP SEQRES 3 A 259 LEU GLY VAL SER GLU VAL THR ARG PHE ASN VAL GLY ASN SEQRES 4 A 259 GLU SER ASN GLY LEU ILE GLY ALA LEU GLN LEU LYS ASN SEQRES 5 A 259 LYS ILE ASP PHE SER LYS ASP PHE ASN PHE LYS VAL ARG SEQRES 6 A 259 VAL ALA ASN ASN HIS GLN SER ASN THR THR GLY ALA ASP SEQRES 7 A 259 GLY TRP GLY PHE LEU PHE SER LYS GLY ASN ALA GLU GLU SEQRES 8 A 259 TYR LEU THR ASN GLY GLY ILE LEU GLY ASP LYS GLY LEU SEQRES 9 A 259 VAL ASN SER GLY GLY PHE LYS ILE ASP THR GLY TYR ILE SEQRES 10 A 259 TYR THR SER SER MET ASP LYS THR GLU LYS GLN ALA GLY SEQRES 11 A 259 GLN GLY TYR ARG GLY TYR GLY ALA PHE VAL LYS ASN ASP SEQRES 12 A 259 SER SER GLY ASN SER GLN MET VAL GLY GLU ASN ILE ASP SEQRES 13 A 259 LYS SER LYS THR ASN PHE LEU ASN TYR ALA ASP ASN SER SEQRES 14 A 259 THR ASN THR SER ASP GLY LYS PHE HIS GLY GLN ARG LEU SEQRES 15 A 259 ASN ASP VAL ILE LEU THR TYR VAL ALA SER THR GLY LYS SEQRES 16 A 259 MET ARG ALA GLU TYR ALA GLY LYS THR TRP GLU THR SER SEQRES 17 A 259 ILE THR ASP LEU GLY LEU SER LYS ASN GLN ALA TYR ASN SEQRES 18 A 259 PHE LEU ILE THR SER SER GLN ARG TRP GLY LEU ASN GLN SEQRES 19 A 259 GLY ILE ASN ALA ASN GLY TRP MET ARG THR ASP LEU LYS SEQRES 20 A 259 GLY SER GLU PHE THR PHE THR PRO GLU ALA PRO LYS SEQRES 1 B 259 SER THR PRO ILE THR ILE GLN GLY LYS GLU HIS PHE GLU SEQRES 2 B 259 GLY TYR GLY SER VAL ASP ILE GLN LYS LYS PRO THR ASP SEQRES 3 B 259 LEU GLY VAL SER GLU VAL THR ARG PHE ASN VAL GLY ASN SEQRES 4 B 259 GLU SER ASN GLY LEU ILE GLY ALA LEU GLN LEU LYS ASN SEQRES 5 B 259 LYS ILE ASP PHE SER LYS ASP PHE ASN PHE LYS VAL ARG SEQRES 6 B 259 VAL ALA ASN ASN HIS GLN SER ASN THR THR GLY ALA ASP SEQRES 7 B 259 GLY TRP GLY PHE LEU PHE SER LYS GLY ASN ALA GLU GLU SEQRES 8 B 259 TYR LEU THR ASN GLY GLY ILE LEU GLY ASP LYS GLY LEU SEQRES 9 B 259 VAL ASN SER GLY GLY PHE LYS ILE ASP THR GLY TYR ILE SEQRES 10 B 259 TYR THR SER SER MET ASP LYS THR GLU LYS GLN ALA GLY SEQRES 11 B 259 GLN GLY TYR ARG GLY TYR GLY ALA PHE VAL LYS ASN ASP SEQRES 12 B 259 SER SER GLY ASN SER GLN MET VAL GLY GLU ASN ILE ASP SEQRES 13 B 259 LYS SER LYS THR ASN PHE LEU ASN TYR ALA ASP ASN SER SEQRES 14 B 259 THR ASN THR SER ASP GLY LYS PHE HIS GLY GLN ARG LEU SEQRES 15 B 259 ASN ASP VAL ILE LEU THR TYR VAL ALA SER THR GLY LYS SEQRES 16 B 259 MET ARG ALA GLU TYR ALA GLY LYS THR TRP GLU THR SER SEQRES 17 B 259 ILE THR ASP LEU GLY LEU SER LYS ASN GLN ALA TYR ASN SEQRES 18 B 259 PHE LEU ILE THR SER SER GLN ARG TRP GLY LEU ASN GLN SEQRES 19 B 259 GLY ILE ASN ALA ASN GLY TRP MET ARG THR ASP LEU LYS SEQRES 20 B 259 GLY SER GLU PHE THR PHE THR PRO GLU ALA PRO LYS SEQRES 1 C 259 SER THR PRO ILE THR ILE GLN GLY LYS GLU HIS PHE GLU SEQRES 2 C 259 GLY TYR GLY SER VAL ASP ILE GLN LYS LYS PRO THR ASP SEQRES 3 C 259 LEU GLY VAL SER GLU VAL THR ARG PHE ASN VAL GLY ASN SEQRES 4 C 259 GLU SER ASN GLY LEU ILE GLY ALA LEU GLN LEU LYS ASN SEQRES 5 C 259 LYS ILE ASP PHE SER LYS ASP PHE ASN PHE LYS VAL ARG SEQRES 6 C 259 VAL ALA ASN ASN HIS GLN SER ASN THR THR GLY ALA ASP SEQRES 7 C 259 GLY TRP GLY PHE LEU PHE SER LYS GLY ASN ALA GLU GLU SEQRES 8 C 259 TYR LEU THR ASN GLY GLY ILE LEU GLY ASP LYS GLY LEU SEQRES 9 C 259 VAL ASN SER GLY GLY PHE LYS ILE ASP THR GLY TYR ILE SEQRES 10 C 259 TYR THR SER SER MET ASP LYS THR GLU LYS GLN ALA GLY SEQRES 11 C 259 GLN GLY TYR ARG GLY TYR GLY ALA PHE VAL LYS ASN ASP SEQRES 12 C 259 SER SER GLY ASN SER GLN MET VAL GLY GLU ASN ILE ASP SEQRES 13 C 259 LYS SER LYS THR ASN PHE LEU ASN TYR ALA ASP ASN SER SEQRES 14 C 259 THR ASN THR SER ASP GLY LYS PHE HIS GLY GLN ARG LEU SEQRES 15 C 259 ASN ASP VAL ILE LEU THR TYR VAL ALA SER THR GLY LYS SEQRES 16 C 259 MET ARG ALA GLU TYR ALA GLY LYS THR TRP GLU THR SER SEQRES 17 C 259 ILE THR ASP LEU GLY LEU SER LYS ASN GLN ALA TYR ASN SEQRES 18 C 259 PHE LEU ILE THR SER SER GLN ARG TRP GLY LEU ASN GLN SEQRES 19 C 259 GLY ILE ASN ALA ASN GLY TRP MET ARG THR ASP LEU LYS SEQRES 20 C 259 GLY SER GLU PHE THR PHE THR PRO GLU ALA PRO LYS SEQRES 1 D 259 SER THR PRO ILE THR ILE GLN GLY LYS GLU HIS PHE GLU SEQRES 2 D 259 GLY TYR GLY SER VAL ASP ILE GLN LYS LYS PRO THR ASP SEQRES 3 D 259 LEU GLY VAL SER GLU VAL THR ARG PHE ASN VAL GLY ASN SEQRES 4 D 259 GLU SER ASN GLY LEU ILE GLY ALA LEU GLN LEU LYS ASN SEQRES 5 D 259 LYS ILE ASP PHE SER LYS ASP PHE ASN PHE LYS VAL ARG SEQRES 6 D 259 VAL ALA ASN ASN HIS GLN SER ASN THR THR GLY ALA ASP SEQRES 7 D 259 GLY TRP GLY PHE LEU PHE SER LYS GLY ASN ALA GLU GLU SEQRES 8 D 259 TYR LEU THR ASN GLY GLY ILE LEU GLY ASP LYS GLY LEU SEQRES 9 D 259 VAL ASN SER GLY GLY PHE LYS ILE ASP THR GLY TYR ILE SEQRES 10 D 259 TYR THR SER SER MET ASP LYS THR GLU LYS GLN ALA GLY SEQRES 11 D 259 GLN GLY TYR ARG GLY TYR GLY ALA PHE VAL LYS ASN ASP SEQRES 12 D 259 SER SER GLY ASN SER GLN MET VAL GLY GLU ASN ILE ASP SEQRES 13 D 259 LYS SER LYS THR ASN PHE LEU ASN TYR ALA ASP ASN SER SEQRES 14 D 259 THR ASN THR SER ASP GLY LYS PHE HIS GLY GLN ARG LEU SEQRES 15 D 259 ASN ASP VAL ILE LEU THR TYR VAL ALA SER THR GLY LYS SEQRES 16 D 259 MET ARG ALA GLU TYR ALA GLY LYS THR TRP GLU THR SER SEQRES 17 D 259 ILE THR ASP LEU GLY LEU SER LYS ASN GLN ALA TYR ASN SEQRES 18 D 259 PHE LEU ILE THR SER SER GLN ARG TRP GLY LEU ASN GLN SEQRES 19 D 259 GLY ILE ASN ALA ASN GLY TRP MET ARG THR ASP LEU LYS SEQRES 20 D 259 GLY SER GLU PHE THR PHE THR PRO GLU ALA PRO LYS HET CA A 500 1 HET CA B 500 1 HET CA C 500 1 HET CA D 500 1 HET EDO C1420 4 HET EDO C1421 4 HET EDO A1420 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 CA 4(CA 2+) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 7 HOH *360(H2 O) HELIX 1 1 GLY A 170 GLU A 172 5 3 HELIX 2 2 ASN A 250 GLY A 258 1 9 HELIX 3 3 SER A 282 GLU A 288 1 7 HELIX 4 4 ILE A 371 GLY A 375 1 5 HELIX 5 5 GLY B 170 GLU B 172 5 3 HELIX 6 6 ASN B 250 GLY B 258 1 9 HELIX 7 7 SER B 282 GLU B 288 1 7 HELIX 8 8 THR B 372 GLY B 375 5 4 HELIX 9 9 GLY C 170 GLU C 172 5 3 HELIX 10 10 ASN C 250 GLY C 258 1 9 HELIX 11 11 SER C 283 GLU C 288 1 6 HELIX 12 12 ALA C 353 THR C 355 5 3 HELIX 13 13 THR C 372 GLY C 375 5 4 HELIX 14 14 GLY D 170 GLU D 172 5 3 HELIX 15 15 ASN D 250 GLY D 258 1 9 HELIX 16 16 SER D 282 GLU D 288 1 7 HELIX 17 17 ALA D 353 THR D 355 5 3 HELIX 18 18 ILE D 371 GLY D 375 1 5 SHEET 1 AA 2 ILE A 166 ILE A 168 0 SHEET 2 AA 2 MET A 404 PHE A 415 1 O PHE A 413 N ILE A 168 SHEET 1 AB 8 VAL A 180 LYS A 184 0 SHEET 2 AB 8 GLU A 193 PHE A 197 -1 O VAL A 194 N GLN A 183 SHEET 3 AB 8 MET A 404 PHE A 415 -1 O MET A 404 N PHE A 197 SHEET 4 AB 8 PHE A 222 ALA A 229 -1 O ASN A 223 N THR A 414 SHEET 5 AB 8 ASN A 345 TYR A 351 -1 O ASN A 345 N VAL A 228 SHEET 6 AB 8 LYS A 357 TYR A 362 -1 O ARG A 359 N THR A 350 SHEET 7 AB 8 LYS A 365 SER A 370 -1 O LYS A 365 N TYR A 362 SHEET 8 AB 8 GLU A 315 ASN A 316 -1 O GLU A 315 N GLU A 368 SHEET 1 AC 4 VAL A 180 LYS A 184 0 SHEET 2 AC 4 GLU A 193 PHE A 197 -1 O VAL A 194 N GLN A 183 SHEET 3 AC 4 MET A 404 PHE A 415 -1 O MET A 404 N PHE A 197 SHEET 4 AC 4 ILE A 166 ILE A 168 1 O ILE A 166 N PHE A 415 SHEET 1 AD 7 PHE A 174 GLY A 178 0 SHEET 2 AD 7 LEU A 206 LEU A 212 -1 O ALA A 209 N TYR A 177 SHEET 3 AD 7 ALA A 381 GLN A 390 -1 O PHE A 384 N LEU A 212 SHEET 4 AD 7 GLY A 241 SER A 247 -1 N GLY A 241 O SER A 389 SHEET 5 AD 7 SER A 269 ASP A 275 -1 O GLY A 270 N PHE A 246 SHEET 6 AD 7 ARG A 296 ASN A 304 -1 O TYR A 298 N ASP A 275 SHEET 7 AD 7 SER A 310 VAL A 313 -1 O GLN A 311 N LYS A 303 SHEET 1 AE 4 PHE A 174 GLY A 178 0 SHEET 2 AE 4 LEU A 206 LEU A 212 -1 O ALA A 209 N TYR A 177 SHEET 3 AE 4 ALA A 381 GLN A 390 -1 O PHE A 384 N LEU A 212 SHEET 4 AE 4 ILE A 216 ASP A 217 -1 O ILE A 216 N TYR A 382 SHEET 1 AF 2 SER A 310 VAL A 313 0 SHEET 2 AF 2 ARG A 296 ASN A 304 -1 O PHE A 301 N VAL A 313 SHEET 1 AG 7 PHE A 174 GLY A 178 0 SHEET 2 AG 7 LEU A 206 LEU A 212 -1 O ALA A 209 N TYR A 177 SHEET 3 AG 7 ALA A 381 GLN A 390 -1 O PHE A 384 N LEU A 212 SHEET 4 AG 7 GLY A 241 SER A 247 -1 N GLY A 241 O SER A 389 SHEET 5 AG 7 SER A 269 ASP A 275 -1 O GLY A 270 N PHE A 246 SHEET 6 AG 7 ARG A 296 ASN A 304 -1 O TYR A 298 N ASP A 275 SHEET 7 AG 7 PHE A 324 ASN A 326 -1 O LEU A 325 N GLY A 297 SHEET 1 BA 2 ILE B 166 ILE B 168 0 SHEET 2 BA 2 MET B 404 PHE B 415 1 O PHE B 413 N ILE B 168 SHEET 1 BB 8 VAL B 180 LYS B 184 0 SHEET 2 BB 8 GLU B 193 PHE B 197 -1 O VAL B 194 N GLN B 183 SHEET 3 BB 8 MET B 404 PHE B 415 -1 O MET B 404 N PHE B 197 SHEET 4 BB 8 PHE B 222 ALA B 229 -1 O ASN B 223 N THR B 414 SHEET 5 BB 8 ASN B 345 VAL B 352 -1 O ASN B 345 N VAL B 228 SHEET 6 BB 8 LYS B 357 GLU B 361 -1 O LYS B 357 N VAL B 352 SHEET 7 BB 8 TRP B 367 SER B 370 -1 O TRP B 367 N ALA B 360 SHEET 8 BB 8 GLU B 315 ASN B 316 -1 O GLU B 315 N GLU B 368 SHEET 1 BC 4 VAL B 180 LYS B 184 0 SHEET 2 BC 4 GLU B 193 PHE B 197 -1 O VAL B 194 N GLN B 183 SHEET 3 BC 4 MET B 404 PHE B 415 -1 O MET B 404 N PHE B 197 SHEET 4 BC 4 ILE B 166 ILE B 168 1 O ILE B 166 N PHE B 415 SHEET 1 BD 7 PHE B 174 GLY B 178 0 SHEET 2 BD 7 LEU B 206 LEU B 212 -1 O ALA B 209 N TYR B 177 SHEET 3 BD 7 ALA B 381 GLN B 390 -1 O PHE B 384 N LEU B 212 SHEET 4 BD 7 GLY B 241 SER B 247 -1 O GLY B 241 N SER B 389 SHEET 5 BD 7 SER B 269 ASP B 275 -1 O GLY B 270 N PHE B 246 SHEET 6 BD 7 ARG B 296 ASN B 304 -1 O TYR B 298 N ASP B 275 SHEET 7 BD 7 SER B 310 VAL B 313 -1 O GLN B 311 N LYS B 303 SHEET 1 BE 4 PHE B 174 GLY B 178 0 SHEET 2 BE 4 LEU B 206 LEU B 212 -1 O ALA B 209 N TYR B 177 SHEET 3 BE 4 ALA B 381 GLN B 390 -1 O PHE B 384 N LEU B 212 SHEET 4 BE 4 ILE B 216 ASP B 217 -1 O ILE B 216 N TYR B 382 SHEET 1 BF 2 SER B 310 VAL B 313 0 SHEET 2 BF 2 ARG B 296 ASN B 304 -1 O PHE B 301 N VAL B 313 SHEET 1 BG 7 PHE B 174 GLY B 178 0 SHEET 2 BG 7 LEU B 206 LEU B 212 -1 O ALA B 209 N TYR B 177 SHEET 3 BG 7 ALA B 381 GLN B 390 -1 O PHE B 384 N LEU B 212 SHEET 4 BG 7 GLY B 241 SER B 247 -1 O GLY B 241 N SER B 389 SHEET 5 BG 7 SER B 269 ASP B 275 -1 O GLY B 270 N PHE B 246 SHEET 6 BG 7 ARG B 296 ASN B 304 -1 O TYR B 298 N ASP B 275 SHEET 7 BG 7 PHE B 324 ASN B 326 -1 O LEU B 325 N GLY B 297 SHEET 1 CA 2 ILE C 166 ILE C 168 0 SHEET 2 CA 2 MET C 404 PHE C 415 1 O PHE C 413 N ILE C 168 SHEET 1 CB 8 VAL C 180 LYS C 184 0 SHEET 2 CB 8 GLU C 193 PHE C 197 -1 O VAL C 194 N GLN C 183 SHEET 3 CB 8 MET C 404 PHE C 415 -1 O MET C 404 N PHE C 197 SHEET 4 CB 8 PHE C 222 ALA C 229 -1 O ASN C 223 N THR C 414 SHEET 5 CB 8 ASN C 345 TYR C 351 -1 O ASN C 345 N VAL C 228 SHEET 6 CB 8 LYS C 357 TYR C 362 -1 O ARG C 359 N THR C 350 SHEET 7 CB 8 LYS C 365 SER C 370 -1 O LYS C 365 N TYR C 362 SHEET 8 CB 8 GLU C 315 ASN C 316 -1 O GLU C 315 N GLU C 368 SHEET 1 CC 4 VAL C 180 LYS C 184 0 SHEET 2 CC 4 GLU C 193 PHE C 197 -1 O VAL C 194 N GLN C 183 SHEET 3 CC 4 MET C 404 PHE C 415 -1 O MET C 404 N PHE C 197 SHEET 4 CC 4 ILE C 166 ILE C 168 1 O ILE C 166 N PHE C 415 SHEET 1 CD 7 PHE C 174 GLY C 178 0 SHEET 2 CD 7 LEU C 206 LEU C 212 -1 O ALA C 209 N TYR C 177 SHEET 3 CD 7 ALA C 381 GLN C 390 -1 O PHE C 384 N LEU C 212 SHEET 4 CD 7 GLY C 241 SER C 247 -1 O GLY C 241 N SER C 389 SHEET 5 CD 7 SER C 269 ASP C 275 -1 O GLY C 270 N PHE C 246 SHEET 6 CD 7 ARG C 296 ASN C 304 -1 O TYR C 298 N ASP C 275 SHEET 7 CD 7 SER C 310 VAL C 313 -1 O GLN C 311 N LYS C 303 SHEET 1 CE 4 PHE C 174 GLY C 178 0 SHEET 2 CE 4 LEU C 206 LEU C 212 -1 O ALA C 209 N TYR C 177 SHEET 3 CE 4 ALA C 381 GLN C 390 -1 O PHE C 384 N LEU C 212 SHEET 4 CE 4 ILE C 216 ASP C 217 -1 O ILE C 216 N TYR C 382 SHEET 1 CF 2 SER C 310 VAL C 313 0 SHEET 2 CF 2 ARG C 296 ASN C 304 -1 O PHE C 301 N VAL C 313 SHEET 1 CG 7 PHE C 174 GLY C 178 0 SHEET 2 CG 7 LEU C 206 LEU C 212 -1 O ALA C 209 N TYR C 177 SHEET 3 CG 7 ALA C 381 GLN C 390 -1 O PHE C 384 N LEU C 212 SHEET 4 CG 7 GLY C 241 SER C 247 -1 O GLY C 241 N SER C 389 SHEET 5 CG 7 SER C 269 ASP C 275 -1 O GLY C 270 N PHE C 246 SHEET 6 CG 7 ARG C 296 ASN C 304 -1 O TYR C 298 N ASP C 275 SHEET 7 CG 7 PHE C 324 ASN C 326 -1 O LEU C 325 N GLY C 297 SHEET 1 DA 6 ILE D 166 ILE D 168 0 SHEET 2 DA 6 GLU D 412 PHE D 415 -1 O PHE D 413 N ILE D 168 SHEET 3 DA 6 PHE D 222 ALA D 229 1 O ASN D 223 N THR D 414 SHEET 4 DA 6 MET D 404 THR D 406 -1 O ARG D 405 N ALA D 229 SHEET 5 DA 6 GLU D 193 PHE D 197 -1 O THR D 195 N THR D 406 SHEET 6 DA 6 VAL D 180 LYS D 184 -1 O ASP D 181 N ARG D 196 SHEET 1 DB 7 ILE D 166 ILE D 168 0 SHEET 2 DB 7 GLU D 412 PHE D 415 -1 O PHE D 413 N ILE D 168 SHEET 3 DB 7 PHE D 222 ALA D 229 1 O ASN D 223 N THR D 414 SHEET 4 DB 7 ASN D 345 TYR D 351 -1 O ASN D 345 N VAL D 228 SHEET 5 DB 7 LYS D 357 TYR D 362 -1 O ARG D 359 N THR D 350 SHEET 6 DB 7 LYS D 365 SER D 370 -1 O LYS D 365 N TYR D 362 SHEET 7 DB 7 GLU D 315 ASN D 316 -1 O GLU D 315 N GLU D 368 SHEET 1 DC 7 PHE D 174 GLY D 178 0 SHEET 2 DC 7 LEU D 206 LEU D 212 -1 O ALA D 209 N TYR D 177 SHEET 3 DC 7 ALA D 381 GLN D 390 -1 O PHE D 384 N LEU D 212 SHEET 4 DC 7 ALA D 239 SER D 247 -1 N ASP D 240 O SER D 389 SHEET 5 DC 7 SER D 269 ASP D 275 -1 O GLY D 270 N PHE D 246 SHEET 6 DC 7 ARG D 296 ASN D 304 -1 O TYR D 298 N ASP D 275 SHEET 7 DC 7 SER D 310 MET D 312 -1 O GLN D 311 N LYS D 303 SHEET 1 DD 4 PHE D 174 GLY D 178 0 SHEET 2 DD 4 LEU D 206 LEU D 212 -1 O ALA D 209 N TYR D 177 SHEET 3 DD 4 ALA D 381 GLN D 390 -1 O PHE D 384 N LEU D 212 SHEET 4 DD 4 ILE D 216 ASP D 217 -1 O ILE D 216 N TYR D 382 SHEET 1 DE 2 SER D 310 MET D 312 0 SHEET 2 DE 2 ARG D 296 ASN D 304 -1 O LYS D 303 N GLN D 311 SHEET 1 DF 7 PHE D 174 GLY D 178 0 SHEET 2 DF 7 LEU D 206 LEU D 212 -1 O ALA D 209 N TYR D 177 SHEET 3 DF 7 ALA D 381 GLN D 390 -1 O PHE D 384 N LEU D 212 SHEET 4 DF 7 ALA D 239 SER D 247 -1 N ASP D 240 O SER D 389 SHEET 5 DF 7 SER D 269 ASP D 275 -1 O GLY D 270 N PHE D 246 SHEET 6 DF 7 ARG D 296 ASN D 304 -1 O TYR D 298 N ASP D 275 SHEET 7 DF 7 PHE D 324 ASN D 326 -1 O LEU D 325 N GLY D 297 LINK CA CA A 500 O HOH A2036 1555 1555 2.07 LINK CA CA A 500 O GLY A 277 1555 1555 2.34 LINK CA CA A 500 OD1 ASP A 275 1555 1555 2.38 LINK CA CA A 500 OD2 ASP A 275 1555 1555 2.33 LINK CA CA A 500 OD1 ASP A 285 1555 1555 2.38 LINK CA CA A 500 O HOH A2048 1555 1555 2.45 LINK CA CA A 500 OD2 ASP A 285 1555 1555 2.46 LINK CA CA A 500 OE1 GLN A 290 1555 1555 2.37 LINK CA CA B 500 O GLY B 277 1555 1555 2.37 LINK CA CA B 500 OD1 ASP B 285 1555 1555 2.37 LINK CA CA B 500 OD2 ASP B 285 1555 1555 2.39 LINK CA CA B 500 O HOH B2030 1555 1555 2.01 LINK CA CA B 500 O HOH B2039 1555 1555 2.51 LINK CA CA B 500 OD1 ASP B 275 1555 1555 2.40 LINK CA CA B 500 OD2 ASP B 275 1555 1555 2.41 LINK CA CA B 500 OE1 GLN B 290 1555 1555 2.45 LINK CA CA C 500 OD1 ASP C 285 1555 1555 2.32 LINK CA CA C 500 OD2 ASP C 285 1555 1555 2.43 LINK CA CA C 500 O HOH C2054 1555 1555 2.76 LINK CA CA C 500 OD1 ASP C 275 1555 1555 2.30 LINK CA CA C 500 OD2 ASP C 275 1555 1555 2.41 LINK CA CA C 500 O GLY C 277 1555 1555 2.25 LINK CA CA C 500 OE1 GLN C 290 1555 1555 2.46 LINK CA CA C 500 O HOH C2041 1555 1555 2.74 LINK CA CA D 500 OD1 ASP D 275 1555 1555 2.36 LINK CA CA D 500 O GLY D 277 1555 1555 2.34 LINK CA CA D 500 OD2 ASP D 285 1555 1555 2.32 LINK CA CA D 500 OE1 GLN D 290 1555 1555 2.42 LINK CA CA D 500 O HOH D2030 1555 1555 3.10 LINK CA CA D 500 OD2 ASP D 275 1555 1555 2.32 LINK CA CA D 500 O HOH D2042 1555 1555 2.53 LINK CA CA D 500 OD1 ASP D 285 1555 1555 2.29 SITE 1 AC1 6 ASP A 275 GLY A 277 ASP A 285 GLN A 290 SITE 2 AC1 6 HOH A2036 HOH A2048 SITE 1 AC2 6 ASP B 275 GLY B 277 ASP B 285 GLN B 290 SITE 2 AC2 6 HOH B2030 HOH B2039 SITE 1 AC3 6 ASP C 275 GLY C 277 ASP C 285 GLN C 290 SITE 2 AC3 6 HOH C2041 HOH C2054 SITE 1 AC4 6 ASP D 275 GLY D 277 ASP D 285 GLN D 290 SITE 2 AC4 6 HOH D2030 HOH D2042 SITE 1 AC5 8 ALA B 353 THR B 355 GLY B 356 HOH B2071 SITE 2 AC5 8 ARG C 196 TRP C 403 HOH C2009 HOH C2101 SITE 1 AC6 5 ARG B 196 ALA C 353 SER C 354 LYS C 378 SITE 2 AC6 5 HOH C2102 SITE 1 AC7 7 ALA A 353 SER A 354 THR A 355 LYS A 378 SITE 2 AC7 7 HOH A2056 ARG D 196 VAL D 199 CRYST1 63.210 63.210 273.360 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003658 0.00000