HEADER TOXIN 30-OCT-13 4CDB TITLE CRYSTAL STRUCTURE OF LISTERIOLYSIN O COMPND MOL_ID: 1; COMPND 2 MOLECULE: LISTERIOLYSIN O; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 1-4, RESIDUES 39-526 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639 KEYWDS TOXIN, CHOLESTEROL DEPENDENT CYTOLYSIN, MEMBRANE PERFORATION, KEYWDS 2 HEMOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.KOESTER,O.YILDIZ REVDAT 4 20-DEC-23 4CDB 1 REMARK LINK REVDAT 3 07-MAY-14 4CDB 1 JRNL REVDAT 2 30-APR-14 4CDB 1 JRNL REVDAT 1 23-APR-14 4CDB 0 JRNL AUTH S.KOESTER,K.V.PEE,M.HUDEL,M.LEUSTIK,D.RHINOW,W.KUEHLBRANDT, JRNL AUTH 2 T.CHAKRABORTY,O.YILDIZ JRNL TITL CRYSTAL STRUCTURE OF LISTERIOLYSIN O REVEALS MOLECULAR JRNL TITL 2 DETAILS OF OLIGOMERIZATION AND PORE FORMATION JRNL REF NAT.COMMUN. V. 5 3690 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 24751541 JRNL DOI 10.1038/NCOMMS4690 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6501 - 4.7799 1.00 2818 149 0.1644 0.1908 REMARK 3 2 4.7799 - 3.7944 1.00 2627 138 0.1518 0.1993 REMARK 3 3 3.7944 - 3.3149 1.00 2594 137 0.1819 0.2394 REMARK 3 4 3.3149 - 3.0119 1.00 2593 136 0.2032 0.2551 REMARK 3 5 3.0119 - 2.7961 1.00 2583 136 0.2098 0.2582 REMARK 3 6 2.7961 - 2.6312 1.00 2528 133 0.2133 0.3058 REMARK 3 7 2.6312 - 2.4995 1.00 2561 135 0.2366 0.3074 REMARK 3 8 2.4995 - 2.3907 1.00 2512 132 0.2379 0.3171 REMARK 3 9 2.3907 - 2.2986 1.00 2543 134 0.2577 0.3288 REMARK 3 10 2.2986 - 2.2193 1.00 2488 131 0.2722 0.3143 REMARK 3 11 2.2193 - 2.1499 0.99 2547 134 0.2963 0.3572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3927 REMARK 3 ANGLE : 0.608 5331 REMARK 3 CHIRALITY : 0.042 590 REMARK 3 PLANARITY : 0.002 695 REMARK 3 DIHEDRAL : 12.809 1451 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -6.1773 7.7111 -26.1734 REMARK 3 T TENSOR REMARK 3 T11: 0.2265 T22: 0.3274 REMARK 3 T33: 0.3583 T12: 0.0333 REMARK 3 T13: -0.0007 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.0513 L22: 0.9749 REMARK 3 L33: 4.0610 L12: 0.3923 REMARK 3 L13: -0.6895 L23: -1.8379 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.0816 S13: 0.0033 REMARK 3 S21: 0.0087 S22: -0.1338 S23: 0.0402 REMARK 3 S31: -0.0435 S32: 0.2659 S33: 0.1663 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29894 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PFO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 150 -147.05 -94.45 REMARK 500 LYS A 192 -37.52 -135.32 REMARK 500 ASN A 199 72.61 -119.48 REMARK 500 TYR A 212 -36.18 -141.09 REMARK 500 SER A 327 82.23 -44.06 REMARK 500 LYS A 353 -138.22 -93.90 REMARK 500 ASP A 354 42.23 -106.47 REMARK 500 LEU A 366 -162.26 -77.01 REMARK 500 GLU A 490 76.49 -158.65 REMARK 500 ASP A 525 -14.62 66.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1541 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 70 OH REMARK 620 2 ASP A 394 OD1 131.8 REMARK 620 3 ACT A1529 OXT 101.3 96.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1543 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 81 OD2 REMARK 620 2 HOH A2155 O 132.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1539 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 116 OE1 REMARK 620 2 PHE A 221 O 101.6 REMARK 620 3 TYR A 303 OH 89.3 140.7 REMARK 620 4 HOH A2086 O 62.5 107.0 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1538 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 126 OH REMARK 620 2 ALA A 173 O 118.3 REMARK 620 3 HOH A2104 O 93.4 135.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1531 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD1 REMARK 620 2 ASP A 208 O 138.1 REMARK 620 3 LYS A 220 NZ 98.9 69.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1536 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 209 OE1 REMARK 620 2 TYR A 406 OH 129.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1544 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 214 OE2 REMARK 620 2 HOH A2160 O 126.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1533 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 218 O REMARK 620 2 ASN A 402 OD1 107.0 REMARK 620 3 HOH A2079 O 113.2 79.1 REMARK 620 4 HOH A2111 O 119.2 133.1 76.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1542 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 247 OE2 REMARK 620 2 GLU A 247 OE1 47.4 REMARK 620 3 ASP A 320 OD1 98.6 127.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1540 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 278 OE1 REMARK 620 2 HOH A2116 O 107.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1545 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 348 OH REMARK 620 2 HOH A2161 O 109.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1532 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 409 O REMARK 620 2 HOH A2154 O 119.6 REMARK 620 3 HOH A2167 O 99.0 141.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1534 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 440 OH REMARK 620 2 GLU A 446 OE2 104.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1527 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1532 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1536 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1537 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1538 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1539 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1540 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1541 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1542 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1543 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1544 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1545 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM A 1546 DBREF 4CDB A 39 526 UNP G2K2K4 G2K2K4_LISM4 39 526 SEQRES 1 A 488 MET ALA PRO PRO ALA SER PRO PRO ALA SER PRO LYS THR SEQRES 2 A 488 PRO ILE GLU LYS LYS HIS ALA ASP GLU ILE ASP LYS TYR SEQRES 3 A 488 ILE GLN GLY LEU ASP TYR ASN LYS ASN ASN VAL LEU VAL SEQRES 4 A 488 TYR HIS GLY ASP ALA VAL THR ASN VAL PRO PRO ARG LYS SEQRES 5 A 488 GLY TYR LYS ASP GLY ASN GLU TYR ILE VAL VAL GLU LYS SEQRES 6 A 488 LYS LYS LYS SER ILE ASN GLN ASN ASN ALA ASP ILE GLN SEQRES 7 A 488 VAL VAL ASN ALA ILE SER SER LEU THR TYR PRO GLY ALA SEQRES 8 A 488 LEU VAL LYS ALA ASN SER GLU LEU VAL GLU ASN GLN PRO SEQRES 9 A 488 ASP VAL LEU PRO VAL LYS ARG ASP SER LEU THR LEU SER SEQRES 10 A 488 ILE ASP LEU PRO GLY MET THR ASN GLN ASP ASN LYS ILE SEQRES 11 A 488 VAL VAL LYS ASN ALA THR LYS SER ASN VAL ASN ASN ALA SEQRES 12 A 488 VAL ASN THR LEU VAL GLU ARG TRP ASN GLU LYS TYR ALA SEQRES 13 A 488 GLN ALA TYR PRO ASN VAL SER ALA LYS ILE ASP TYR ASP SEQRES 14 A 488 ASP GLU MET ALA TYR SER GLU SER GLN LEU ILE ALA LYS SEQRES 15 A 488 PHE GLY THR ALA PHE LYS ALA VAL ASN ASN SER LEU ASN SEQRES 16 A 488 VAL ASN PHE GLY ALA ILE SER GLU GLY LYS MET GLN GLU SEQRES 17 A 488 GLU VAL ILE SER PHE LYS GLN ILE TYR TYR ASN VAL ASN SEQRES 18 A 488 VAL ASN GLU PRO THR ARG PRO SER ARG PHE PHE GLY LYS SEQRES 19 A 488 ALA VAL THR LYS GLU GLN LEU GLN ALA LEU GLY VAL ASN SEQRES 20 A 488 ALA GLU ASN PRO PRO ALA TYR ILE SER SER VAL ALA TYR SEQRES 21 A 488 GLY ARG GLN VAL TYR LEU LYS LEU SER THR ASN SER HIS SEQRES 22 A 488 SER THR LYS VAL LYS ALA ALA PHE ASP ALA ALA VAL SER SEQRES 23 A 488 GLY LYS SER VAL SER GLY ASP VAL GLU LEU THR ASN ILE SEQRES 24 A 488 ILE LYS ASN SER SER PHE LYS ALA VAL ILE TYR GLY GLY SEQRES 25 A 488 SER ALA LYS ASP GLU VAL GLN ILE ILE ASP GLY ASN LEU SEQRES 26 A 488 GLY ASP LEU ARG ASP ILE LEU LYS LYS GLY ALA THR PHE SEQRES 27 A 488 ASN ARG GLU THR PRO GLY VAL PRO ILE ALA TYR THR THR SEQRES 28 A 488 ASN PHE LEU LYS ASP ASN GLU LEU ALA VAL ILE LYS ASN SEQRES 29 A 488 ASN SER GLU TYR ILE GLU THR THR SER LYS ALA TYR THR SEQRES 30 A 488 ASP GLY LYS ILE ASN ILE ASP HIS SER GLY GLY TYR VAL SEQRES 31 A 488 ALA GLN PHE ASN ILE SER TRP ASP GLU VAL ASN TYR ASP SEQRES 32 A 488 PRO GLU GLY ASN GLU ILE VAL GLN HIS LYS ASN TRP SER SEQRES 33 A 488 GLU ASN ASN LYS SER LYS LEU ALA HIS PHE THR SER SER SEQRES 34 A 488 ILE TYR LEU PRO GLY ASN ALA ARG ASN ILE ASN VAL TYR SEQRES 35 A 488 ALA LYS GLU CYS THR GLY LEU ALA TRP GLU TRP TRP ARG SEQRES 36 A 488 THR VAL ILE ASP ASP ARG ASN LEU PRO LEU VAL LYS ASN SEQRES 37 A 488 ARG ASN ILE SER ILE TRP GLY THR THR LEU TYR PRO LYS SEQRES 38 A 488 TYR SER ASN LYS VAL ASP ASN HET ACT A1527 4 HET ACT A1528 4 HET ACT A1529 4 HET ACT A1530 4 HET NA A1531 1 HET NA A1532 1 HET NA A1533 1 HET NA A1534 1 HET NA A1535 1 HET NA A1536 1 HET NA A1537 1 HET NA A1538 1 HET NA A1539 1 HET NA A1540 1 HET NA A1541 1 HET NA A1542 1 HET NA A1543 1 HET NA A1544 1 HET NA A1545 1 HET TAM A1546 11 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE FORMUL 2 ACT 4(C2 H3 O2 1-) FORMUL 6 NA 15(NA 1+) FORMUL 21 TAM C7 H17 N O3 FORMUL 22 HOH *284(H2 O) HELIX 1 1 THR A 51 GLY A 67 1 17 HELIX 2 2 VAL A 118 THR A 125 5 8 HELIX 3 3 ASN A 134 GLU A 139 1 6 HELIX 4 4 THR A 174 GLU A 191 1 18 HELIX 5 5 TYR A 193 TYR A 197 5 5 HELIX 6 6 SER A 213 GLY A 222 1 10 HELIX 7 7 ALA A 224 ASN A 233 1 10 HELIX 8 8 ASN A 235 GLU A 241 1 7 HELIX 9 9 ARG A 265 PHE A 269 5 5 HELIX 10 10 THR A 275 LEU A 282 1 8 HELIX 11 11 LYS A 314 GLY A 325 1 12 HELIX 12 12 ASP A 331 ASN A 340 1 10 HELIX 13 13 GLY A 364 LEU A 366 5 3 SHEET 1 AA 4 VAL A 77 HIS A 79 0 SHEET 2 AA 4 ILE A 400 THR A 415 1 O LYS A 401 N TYR A 78 SHEET 3 AA 4 GLU A 97 ASN A 112 -1 O TYR A 98 N TYR A 414 SHEET 4 AA 4 LYS A 90 ASP A 94 -1 O LYS A 90 N VAL A 101 SHEET 1 AB 5 ILE A 115 GLN A 116 0 SHEET 2 AB 5 VAL A 383 PHE A 391 -1 O TYR A 387 N ILE A 115 SHEET 3 AB 5 PRO A 290 THR A 308 -1 O TYR A 292 N ASN A 390 SHEET 4 AB 5 SER A 341 TYR A 348 1 O SER A 342 N SER A 307 SHEET 5 AB 5 GLN A 357 ASN A 362 1 O GLN A 357 N ILE A 347 SHEET 1 AC 5 ILE A 115 GLN A 116 0 SHEET 2 AC 5 VAL A 383 PHE A 391 -1 O TYR A 387 N ILE A 115 SHEET 3 AC 5 PRO A 290 THR A 308 -1 O TYR A 292 N ASN A 390 SHEET 4 AC 5 GLN A 245 VAL A 260 -1 O GLN A 245 N THR A 308 SHEET 5 AC 5 LYS A 203 MET A 210 -1 O LYS A 203 N ILE A 254 SHEET 1 AD 2 LEU A 130 LYS A 132 0 SHEET 2 AD 2 PRO A 290 THR A 308 1 O ALA A 291 N VAL A 131 SHEET 1 AE 4 ILE A 115 GLN A 116 0 SHEET 2 AE 4 VAL A 383 PHE A 391 -1 O TYR A 387 N ILE A 115 SHEET 3 AE 4 PRO A 290 THR A 308 -1 O TYR A 292 N ASN A 390 SHEET 4 AE 4 LEU A 130 LYS A 132 1 O VAL A 131 N ALA A 291 SHEET 1 AF 6 LYS A 167 VAL A 170 0 SHEET 2 AF 6 LEU A 152 ILE A 156 1 O LEU A 152 N VAL A 170 SHEET 3 AF 6 GLN A 245 VAL A 260 -1 O ASN A 259 N SER A 155 SHEET 4 AF 6 PRO A 290 THR A 308 -1 O SER A 294 N VAL A 260 SHEET 5 AF 6 SER A 341 TYR A 348 1 O SER A 342 N SER A 307 SHEET 6 AF 6 GLN A 357 ASN A 362 1 O GLN A 357 N ILE A 347 SHEET 1 AG 6 ILE A 115 GLN A 116 0 SHEET 2 AG 6 VAL A 383 PHE A 391 -1 O TYR A 387 N ILE A 115 SHEET 3 AG 6 PRO A 290 THR A 308 -1 O TYR A 292 N ASN A 390 SHEET 4 AG 6 GLN A 245 VAL A 260 -1 O GLN A 245 N THR A 308 SHEET 5 AG 6 LEU A 152 ILE A 156 -1 O SER A 155 N ASN A 259 SHEET 6 AG 6 LYS A 167 VAL A 170 1 O ILE A 168 N LEU A 154 SHEET 1 AH 4 LYS A 167 VAL A 170 0 SHEET 2 AH 4 LEU A 152 ILE A 156 1 O LEU A 152 N VAL A 170 SHEET 3 AH 4 GLN A 245 VAL A 260 -1 O ASN A 259 N SER A 155 SHEET 4 AH 4 LYS A 203 MET A 210 -1 O LYS A 203 N ILE A 254 SHEET 1 AI 4 PHE A 464 LEU A 470 0 SHEET 2 AI 4 GLY A 417 HIS A 423 -1 O GLY A 417 N LEU A 470 SHEET 3 AI 4 ASN A 506 GLY A 513 1 O ARG A 507 N ASN A 420 SHEET 4 AI 4 PRO A 518 VAL A 524 -1 O LYS A 519 N TRP A 512 SHEET 1 AJ 4 GLU A 446 ASN A 452 0 SHEET 2 AJ 4 ALA A 429 TYR A 440 -1 O TRP A 435 N LYS A 451 SHEET 3 AJ 4 ALA A 474 LEU A 487 -1 O ARG A 475 N ASP A 436 SHEET 4 AJ 4 GLU A 490 LEU A 501 -1 O GLU A 490 N LEU A 487 LINK OH TYR A 70 NA NA A1541 1555 1555 2.47 LINK OD2 ASP A 81 NA NA A1543 1555 1555 2.70 LINK OE1 GLN A 116 NA NA A1539 1555 1555 2.94 LINK O SER A 123 NA NA A1535 1555 1555 2.58 LINK OH TYR A 126 NA NA A1538 1555 1555 2.56 LINK OD1 ASN A 172 NA NA A1537 1555 1555 2.51 LINK O ALA A 173 NA NA A1538 1555 1555 2.89 LINK OD1 ASP A 207 NA NA A1531 1555 1555 2.53 LINK O ASP A 208 NA NA A1531 1555 1555 3.18 LINK OE1 GLU A 209 NA NA A1536 1555 1555 2.63 LINK OE2 GLU A 214 NA NA A1544 1555 1555 2.55 LINK O ILE A 218 NA NA A1533 1555 1555 2.93 LINK NZ LYS A 220 NA NA A1531 1555 1555 3.12 LINK O PHE A 221 NA NA A1539 1555 1555 2.84 LINK OE2 GLU A 247 NA NA A1542 1555 1555 2.82 LINK OE1 GLU A 247 NA NA A1542 1555 1555 2.62 LINK OE1 GLN A 278 NA NA A1540 1555 1555 2.50 LINK OH TYR A 303 NA NA A1539 1555 1555 2.51 LINK OD1 ASP A 320 NA NA A1542 1555 1555 2.81 LINK OH TYR A 348 NA NA A1545 1555 1555 2.52 LINK OD1 ASP A 394 NA NA A1541 1555 1555 2.67 LINK OD1 ASN A 402 NA NA A1533 1555 1555 2.44 LINK OH TYR A 406 NA NA A1536 1555 1555 2.79 LINK O THR A 409 NA NA A1532 1555 1555 2.47 LINK OH TYR A 440 NA NA A1534 1555 1555 2.57 LINK OE2 GLU A 446 NA NA A1534 1555 1555 2.52 LINK OXT ACT A1529 NA NA A1541 1555 1555 2.52 LINK NA NA A1532 O HOH A2154 1555 1555 2.48 LINK NA NA A1532 O HOH A2167 1555 1555 2.52 LINK NA NA A1533 O HOH A2079 1555 1555 2.98 LINK NA NA A1533 O HOH A2111 1555 1555 2.85 LINK NA NA A1538 O HOH A2104 1555 1555 2.97 LINK NA NA A1539 O HOH A2086 1555 1555 2.57 LINK NA NA A1540 O HOH A2116 1555 1555 2.82 LINK NA NA A1543 O HOH A2155 1555 1555 3.14 LINK NA NA A1544 O HOH A2160 1555 1555 2.50 LINK NA NA A1545 O HOH A2161 1555 1555 2.98 CISPEP 1 ALA A 462 HIS A 463 0 2.42 SITE 1 AC1 6 ASN A 85 PRO A 87 GLN A 430 LYS A 482 SITE 2 AC1 6 TRP A 492 HOH A2229 SITE 1 AC2 8 ASN A 432 PRO A 442 ASN A 478 VAL A 479 SITE 2 AC2 8 TYR A 480 ASP A 497 ASP A 498 HOH A2231 SITE 1 AC3 5 LEU A 68 TYR A 70 LYS A 393 ASP A 394 SITE 2 AC3 5 NA A1541 SITE 1 AC4 3 GLU A 214 NA A1544 HOH A2160 SITE 1 AC5 3 ASP A 207 ASP A 208 LYS A 220 SITE 1 AC6 5 TYR A 212 GLN A 245 THR A 409 HOH A2154 SITE 2 AC6 5 HOH A2167 SITE 1 AC7 5 ILE A 218 GLY A 222 ASN A 402 HOH A2079 SITE 2 AC7 5 HOH A2111 SITE 1 AC8 2 TYR A 440 GLU A 446 SITE 1 AC9 3 SER A 123 THR A 125 ASN A 179 SITE 1 BC1 3 GLU A 209 GLN A 216 TYR A 406 SITE 1 BC2 3 LYS A 148 ARG A 149 ASN A 172 SITE 1 BC3 4 TYR A 126 ARG A 149 ALA A 173 HOH A2104 SITE 1 BC4 4 GLN A 116 PHE A 221 TYR A 303 HOH A2086 SITE 1 BC5 3 VAL A 147 GLN A 278 HOH A2116 SITE 1 BC6 4 TYR A 70 PHE A 391 ASP A 394 ACT A1529 SITE 1 BC7 2 GLU A 247 ASP A 320 SITE 1 BC8 3 ASP A 81 GLU A 214 SER A 215 SITE 1 BC9 4 GLU A 214 ASN A 229 ACT A1530 HOH A2160 SITE 1 CC1 2 TYR A 348 HOH A2161 SITE 1 CC2 8 SER A 466 SER A 467 THR A 494 VAL A 495 SITE 2 CC2 8 ILE A 496 ASP A 497 ASP A 498 TYR A 520 CRYST1 26.720 85.150 229.900 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037425 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004350 0.00000