HEADER LIGASE 01-NOV-13 4CDJ TITLE STRUCTURE OF ZNRF3 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE ZNRF3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ECTODOMAIN, RESIDUES 53-205; COMPND 5 SYNONYM: ZINC/RING FINGER PROTEIN 3; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS LIGASE, WNT SIGNALING, ADULT STEM CELLS, E3 LIGASE, PROTEASE- KEYWDS 2 ASSOCIATED DOMAIN, ZINC RING FINGER, LGR5, R-SPONDIN EXPDTA X-RAY DIFFRACTION AUTHOR W.C.PENG,W.DE LAU,P.K.MADOORI,F.FORNERIS,J.C.M.GRANNEMAN,H.CLEVERS, AUTHOR 2 P.GROS REVDAT 3 03-APR-19 4CDJ 1 SOURCE REVDAT 2 15-JAN-14 4CDJ 1 HETATM CONECT REVDAT 1 08-JAN-14 4CDJ 0 JRNL AUTH W.C.PENG,W.DE LAU,P.K.MADOORI,F.FORNERIS,J.C.M.GRANNEMAN, JRNL AUTH 2 H.CLEVERS,P.GROS JRNL TITL STRUCTURES OF WNT-ANTAGONIST ZNRF3 AND ITS COMPLEX WITH JRNL TITL 2 R-SPONDIN 1 AND IMPLICATIONS FOR SIGNALING. JRNL REF PLOS ONE V. 8 83110 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24349440 JRNL DOI 10.1371/JOURNAL.PONE.0083110 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 46172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5882 - 3.8563 0.98 2684 151 0.1692 0.1684 REMARK 3 2 3.8563 - 3.0611 0.98 2633 144 0.1537 0.1517 REMARK 3 3 3.0611 - 2.6742 0.98 2650 135 0.1587 0.1666 REMARK 3 4 2.6742 - 2.4297 0.98 2656 123 0.1476 0.1818 REMARK 3 5 2.4297 - 2.2556 0.98 2625 129 0.1458 0.1657 REMARK 3 6 2.2556 - 2.1226 0.97 2584 176 0.1485 0.1690 REMARK 3 7 2.1226 - 2.0163 0.98 2602 129 0.1531 0.1721 REMARK 3 8 2.0163 - 1.9285 0.96 2601 129 0.1492 0.1790 REMARK 3 9 1.9285 - 1.8543 0.96 2573 115 0.1625 0.2255 REMARK 3 10 1.8543 - 1.7903 0.97 2599 118 0.1720 0.2105 REMARK 3 11 1.7903 - 1.7343 0.96 2574 131 0.1720 0.2213 REMARK 3 12 1.7343 - 1.6847 0.95 2516 138 0.1655 0.1969 REMARK 3 13 1.6847 - 1.6404 0.95 2545 134 0.1776 0.2114 REMARK 3 14 1.6404 - 1.6003 0.95 2539 141 0.1867 0.2145 REMARK 3 15 1.6003 - 1.5640 0.94 2491 147 0.2030 0.2389 REMARK 3 16 1.5640 - 1.5307 0.94 2465 163 0.2201 0.2474 REMARK 3 17 1.5307 - 1.5001 0.93 2501 131 0.2378 0.2640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2501 REMARK 3 ANGLE : 1.842 3384 REMARK 3 CHIRALITY : 0.111 382 REMARK 3 PLANARITY : 0.010 446 REMARK 3 DIHEDRAL : 15.127 971 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 56 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2334 8.3480 -24.2645 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.1399 REMARK 3 T33: 0.1429 T12: 0.0101 REMARK 3 T13: -0.0155 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0272 L22: 0.1703 REMARK 3 L33: 0.2104 L12: -0.0616 REMARK 3 L13: -0.0297 L23: -0.0198 REMARK 3 S TENSOR REMARK 3 S11: -0.1767 S12: -0.0369 S13: 0.1790 REMARK 3 S21: -0.2764 S22: 0.0413 S23: 0.1817 REMARK 3 S31: -0.0234 S32: -0.1405 S33: -0.0177 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 69 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0497 13.1886 -26.7366 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1660 REMARK 3 T33: 0.1483 T12: -0.0229 REMARK 3 T13: -0.0046 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.1617 L22: 0.4332 REMARK 3 L33: 0.1167 L12: 0.1396 REMARK 3 L13: -0.0029 L23: -0.0484 REMARK 3 S TENSOR REMARK 3 S11: -0.1110 S12: -0.0198 S13: 0.0163 REMARK 3 S21: -0.3736 S22: 0.0311 S23: 0.0233 REMARK 3 S31: 0.0163 S32: 0.0454 S33: -0.0352 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 85 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2937 -1.3323 -15.1935 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.1045 REMARK 3 T33: 0.1240 T12: 0.0073 REMARK 3 T13: 0.0093 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.2799 L22: 0.2433 REMARK 3 L33: 0.3129 L12: 0.1514 REMARK 3 L13: 0.1536 L23: 0.0181 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0290 S13: 0.1086 REMARK 3 S21: 0.0576 S22: -0.0286 S23: 0.0900 REMARK 3 S31: 0.0688 S32: 0.0244 S33: 0.1012 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 107 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0269 -4.4307 -8.7409 REMARK 3 T TENSOR REMARK 3 T11: 0.3495 T22: 0.3013 REMARK 3 T33: 0.5354 T12: 0.1065 REMARK 3 T13: -0.0514 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.0277 L22: 0.0374 REMARK 3 L33: 0.6282 L12: 0.0288 REMARK 3 L13: -0.1065 L23: -0.0789 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: 0.0169 S13: -0.6381 REMARK 3 S21: 0.3189 S22: 0.0627 S23: -0.5014 REMARK 3 S31: 0.5905 S32: 0.4976 S33: 0.0314 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 120 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5630 -10.2342 -19.9996 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.1361 REMARK 3 T33: 0.1371 T12: 0.0755 REMARK 3 T13: -0.0412 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.4883 L22: 0.8910 REMARK 3 L33: 0.2944 L12: -0.0609 REMARK 3 L13: -0.3325 L23: 0.0602 REMARK 3 S TENSOR REMARK 3 S11: 0.1042 S12: 0.1635 S13: -0.0999 REMARK 3 S21: 0.1018 S22: 0.0565 S23: -0.1084 REMARK 3 S31: 0.2928 S32: 0.2809 S33: 0.0956 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 132 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9161 -9.8348 -14.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.1178 REMARK 3 T33: 0.1277 T12: -0.0106 REMARK 3 T13: -0.0043 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.3301 L22: 0.2282 REMARK 3 L33: 0.2754 L12: 0.0774 REMARK 3 L13: 0.0741 L23: 0.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.0180 S13: -0.0260 REMARK 3 S21: 0.1507 S22: -0.0452 S23: 0.0066 REMARK 3 S31: 0.3683 S32: 0.0310 S33: 0.0485 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 169 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5595 -4.2509 -11.8649 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1941 REMARK 3 T33: 0.1823 T12: -0.0339 REMARK 3 T13: 0.0486 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.1791 L22: 0.4915 REMARK 3 L33: 0.0273 L12: -0.1772 REMARK 3 L13: -0.0563 L23: 0.0760 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0925 S13: -0.0639 REMARK 3 S21: 0.0497 S22: -0.1802 S23: 0.3023 REMARK 3 S31: 0.1383 S32: -0.2660 S33: -0.0513 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 185 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5064 3.9493 -25.3666 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.1483 REMARK 3 T33: 0.1361 T12: -0.0005 REMARK 3 T13: 0.0187 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.1211 L22: 0.3872 REMARK 3 L33: 0.2281 L12: 0.2141 REMARK 3 L13: 0.1247 L23: 0.1213 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0086 S13: 0.0603 REMARK 3 S21: -0.2262 S22: 0.0181 S23: 0.0498 REMARK 3 S31: -0.1599 S32: 0.0309 S33: -0.0024 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 54 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2391 14.2566 -6.1608 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.1617 REMARK 3 T33: 0.1391 T12: 0.0031 REMARK 3 T13: -0.0037 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.0363 L22: 0.2167 REMARK 3 L33: 0.1943 L12: -0.1033 REMARK 3 L13: -0.0870 L23: 0.1910 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0781 S13: -0.1944 REMARK 3 S21: 0.0814 S22: 0.0444 S23: 0.1406 REMARK 3 S31: 0.1501 S32: -0.1523 S33: -0.0199 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 69 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9783 25.9899 -12.9123 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.0991 REMARK 3 T33: 0.1164 T12: -0.0090 REMARK 3 T13: -0.0019 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4802 L22: 1.0368 REMARK 3 L33: 1.6957 L12: -0.2832 REMARK 3 L13: -0.4302 L23: -0.1038 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: -0.0088 S13: 0.0731 REMARK 3 S21: -0.0198 S22: -0.0413 S23: -0.1084 REMARK 3 S31: -0.2752 S32: 0.0484 S33: 0.0765 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 185 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7976 18.6595 -2.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.1682 T22: 0.1466 REMARK 3 T33: 0.1173 T12: 0.0053 REMARK 3 T13: -0.0164 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.1159 L22: 0.3088 REMARK 3 L33: 0.2562 L12: -0.1726 REMARK 3 L13: -0.1539 L23: 0.0749 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.0024 S13: -0.0162 REMARK 3 S21: 0.3247 S22: 0.0406 S23: -0.0328 REMARK 3 S31: 0.1369 S32: 0.0394 S33: -0.0132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1290058858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM FORMATE AT PH 6.6 WITH REMARK 280 20% W/V PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.75150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 54 REMARK 465 SER A 55 REMARK 465 ALA A 209 REMARK 465 ALA A 210 REMARK 465 ALA A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 LEU B 208 REMARK 465 ALA B 209 REMARK 465 ALA B 210 REMARK 465 ALA B 211 REMARK 465 HIS B 212 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 128 O HOH A 2105 1.30 REMARK 500 HD1 HIS B 102 H LEU B 104 1.32 REMARK 500 HE21 GLN A 128 OE1 GLU A 160 1.43 REMARK 500 HO1 EDO A 1212 O HOH A 2170 1.53 REMARK 500 HD22 ASN A 108 O HOH A 2075 1.58 REMARK 500 NE2 GLN A 128 O HOH A 2105 1.84 REMARK 500 O HOH B 2061 O HOH B 2066 1.88 REMARK 500 NE2 GLN A 128 OE1 GLU A 160 1.91 REMARK 500 O HOH A 2057 O HOH A 2084 1.92 REMARK 500 O HOH B 2048 O HOH B 2067 1.93 REMARK 500 O HOH A 2053 O HOH A 2161 1.96 REMARK 500 O HOH B 2028 O HOH B 2029 1.98 REMARK 500 O HOH A 2066 O HOH A 2102 1.99 REMARK 500 O HOH A 2058 O HOH A 2086 2.05 REMARK 500 O GLN A 170 O HOH A 2045 2.07 REMARK 500 O HOH A 2160 O HOH A 2161 2.07 REMARK 500 O HOH B 2084 O HOH B 2085 2.13 REMARK 500 O HOH B 2055 O HOH B 2056 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H THR B 138 H21 EDO A 1212 2454 1.29 REMARK 500 O2 EDO B 1209 O HOH A 2148 2454 1.47 REMARK 500 O HOH B 2021 O HOH B 2085 2445 2.10 REMARK 500 O HOH A 2080 O HOH B 2076 2445 2.11 REMARK 500 C2 EDO B 1209 O HOH A 2148 2454 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 108 41.30 -82.05 REMARK 500 ASN A 109 -115.26 -72.82 REMARK 500 ASP A 111 -149.26 125.92 REMARK 500 GLU A 112 43.51 34.71 REMARK 500 ASN B 110 47.58 -147.32 REMARK 500 ASP B 132 66.99 -152.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 206 HIS B 207 143.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CDK RELATED DB: PDB REMARK 900 STRUCTURE OF ZNRF3-RSPO1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 GS AT THE N-TERMINUS AND AAAHHHHHH AT C-TERMINUS ARE REMARK 999 INTRODUCED BY CLONING. DBREF 4CDJ A 56 208 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 DBREF 4CDJ B 56 208 UNP Q5SSZ7 ZNRF3_MOUSE 53 205 SEQADV 4CDJ GLY A 54 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ SER A 55 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ ALA A 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ ALA A 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ ALA A 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS A 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS A 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS A 214 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS A 215 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS A 216 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS A 217 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ GLY B 54 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ SER B 55 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ ALA B 209 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ ALA B 210 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ ALA B 211 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS B 212 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS B 213 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS B 214 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS B 215 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS B 216 UNP Q5SSZ7 EXPRESSION TAG SEQADV 4CDJ HIS B 217 UNP Q5SSZ7 EXPRESSION TAG SEQRES 1 A 164 GLY SER LYS GLU THR ALA PHE VAL GLU VAL VAL LEU PHE SEQRES 2 A 164 GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR THR SEQRES 3 A 164 GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET LEU SEQRES 4 A 164 SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU GLY SEQRES 5 A 164 LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU TYR SEQRES 6 A 164 GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU LEU SEQRES 7 A 164 ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA LYS SEQRES 8 A 164 ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE ASP SEQRES 9 A 164 VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN GLN SEQRES 10 A 164 GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR VAL SEQRES 11 A 164 LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL ASN SEQRES 12 A 164 LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU ALA SEQRES 13 A 164 ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 164 GLY SER LYS GLU THR ALA PHE VAL GLU VAL VAL LEU PHE SEQRES 2 B 164 GLU SER SER PRO SER GLY ASP TYR THR THR HIS THR THR SEQRES 3 B 164 GLY LEU THR GLY ARG PHE SER ARG ALA GLY ALA MET LEU SEQRES 4 B 164 SER ALA GLU GLY GLU ILE VAL GLN MET HIS PRO LEU GLY SEQRES 5 B 164 LEU CYS ASN ASN ASN ASP GLU GLU ASP LEU TYR GLU TYR SEQRES 6 B 164 GLY TRP VAL GLY VAL VAL LYS LEU GLU GLN PRO GLU LEU SEQRES 7 B 164 ASP PRO LYS PRO CYS LEU THR VAL LEU GLY LYS ALA LYS SEQRES 8 B 164 ARG ALA VAL GLN ARG GLY ALA THR ALA VAL ILE PHE ASP SEQRES 9 B 164 VAL SER GLU ASN PRO GLU ALA ILE ASP GLN LEU ASN GLN SEQRES 10 B 164 GLY SER GLU ASP PRO LEU LYS ARG PRO VAL VAL TYR VAL SEQRES 11 B 164 LYS GLY ALA ASP ALA ILE LYS LEU MET ASN ILE VAL ASN SEQRES 12 B 164 LYS GLN LYS VAL ALA ARG ALA ARG ILE GLN HIS LEU ALA SEQRES 13 B 164 ALA ALA HIS HIS HIS HIS HIS HIS HET EDO A1209 10 HET FMT A1210 5 HET EDO A1211 20 HET EDO A1212 10 HET EDO B1208 10 HET EDO B1209 10 HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 4 FMT C H2 O2 FORMUL 9 HOH *296(H2 O) HELIX 1 1 HIS A 102 CYS A 107 5 6 HELIX 2 2 GLN A 128 ASP A 132 5 5 HELIX 3 3 THR A 138 ARG A 149 1 12 HELIX 4 4 GLU A 163 ASN A 169 1 7 HELIX 5 5 LYS A 184 ASN A 196 1 13 HELIX 6 6 HIS B 102 CYS B 107 5 6 HELIX 7 7 GLN B 128 ASP B 132 5 5 HELIX 8 8 THR B 138 ARG B 149 1 12 HELIX 9 9 GLU B 163 ASN B 169 1 7 HELIX 10 10 LYS B 184 ASN B 196 1 13 SHEET 1 AA 8 THR A 58 GLU A 67 0 SHEET 2 AA 8 THR A 75 PHE A 85 -1 O THR A 75 N GLU A 67 SHEET 3 AA 8 VAL A 180 VAL A 183 -1 O TYR A 182 N ARG A 84 SHEET 4 AA 8 ALA A 151 ASP A 157 1 O VAL A 154 N VAL A 181 SHEET 5 AA 8 TRP A 120 LYS A 125 1 O TRP A 120 N THR A 152 SHEET 6 AA 8 ALA A 94 GLN A 100 1 O GLU A 97 N VAL A 121 SHEET 7 AA 8 ALA A 201 HIS A 207 -1 O ALA A 201 N ILE A 98 SHEET 8 AA 8 THR A 58 GLU A 67 -1 O PHE A 60 N GLN A 206 SHEET 1 BA 8 THR B 58 SER B 68 0 SHEET 2 BA 8 TYR B 74 PHE B 85 -1 O THR B 75 N GLU B 67 SHEET 3 BA 8 VAL B 180 VAL B 183 -1 O TYR B 182 N ARG B 84 SHEET 4 BA 8 ALA B 151 ASP B 157 1 O VAL B 154 N VAL B 181 SHEET 5 BA 8 TRP B 120 LYS B 125 1 O TRP B 120 N THR B 152 SHEET 6 BA 8 ALA B 94 GLN B 100 1 O GLU B 97 N VAL B 121 SHEET 7 BA 8 ALA B 201 GLN B 206 -1 O ALA B 201 N ILE B 98 SHEET 8 BA 8 THR B 58 SER B 68 -1 O PHE B 60 N GLN B 206 SSBOND 1 CYS A 107 CYS A 136 1555 1555 2.04 SSBOND 2 CYS B 107 CYS B 136 1555 1555 2.08 CISPEP 1 ASN A 110 ASP A 111 0 -1.91 CISPEP 2 ASN B 109 ASN B 110 0 -11.12 CISPEP 3 ASP B 111 GLU B 112 0 -22.01 CISPEP 4 GLU B 112 GLU B 113 0 -15.22 SITE 1 AC1 10 SER A 93 ALA A 94 GLU A 95 ILE A 205 SITE 2 AC1 10 HOH A2050 HOH A2052 SER B 93 ALA B 94 SITE 3 AC1 10 GLU B 95 ILE B 205 SITE 1 AC2 5 LEU A 137 THR A 138 GLY A 141 HOH A2115 SITE 2 AC2 5 HOH A2169 SITE 1 AC3 3 LYS A 125 ASP A 157 SER A 159 SITE 1 AC4 3 ILE A 189 ASN A 193 HOH A2170 SITE 1 AC5 4 LYS B 125 ASP B 157 SER B 159 HOH B2098 SITE 1 AC6 2 CYS B 136 LEU B 137 CRYST1 35.686 73.503 58.573 90.00 97.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028022 0.000000 0.003684 0.00000 SCALE2 0.000000 0.013605 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017220 0.00000